CuGenDBv2

Gene ID	MS013448
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein Ycf2
Genome location	scaffold402:1622310..1622537
RNA-Seq Expression	MS013448
Synteny	MS013448
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR008543 - Uncharacterised protein family Ycf2

Homology

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GenBank top hits

e value

%identity

Alignment

AWI73185.1 Ycf2 [Melodinus cambodiensis]

7.6e-27

83.54

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Query:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL
        SFVPSR SENK++VN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKNPFIYLF+LFH+RNR G  L
Subjt:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

QOE56525.1 hypothetical protein RF2 [Zelkova serrata]

1.0e-26

83.54

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Query:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL
        SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKNPF YLF+LFH+RNR G  L
Subjt:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

QWK49731.1 hypothetical protein RF2 [Ulmus lanceifolia]

1.0e-26

83.54

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Query:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL
        SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKNPF YLF+LFH+RNR G  L
Subjt:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

YP_009557903.1 Ycf2 [Zelkova serrata]

1.0e-26

83.54

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Query:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL
        SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKNPF YLF+LFH+RNR G  L
Subjt:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

YP_009733129.1 Ycf2 protein [Ulmus elongata]

1.0e-26

83.54

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Query:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL
        SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKNPF YLF+LFH+RNR G  L
Subjt:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

TrEMBL top hits

e value

%identity

Alignment

A0A1L5YDF8 Protein Ycf2

4.8e-27

83.54

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Query:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL
        SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKNPF YLF+LFH+RNR G  L
Subjt:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

A0A1L5YEA1 Protein Ycf2

4.8e-27

83.54

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Query:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL
        SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKNPF YLF+LFH+RNR G  L
Subjt:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

A0A2S1FWN5 Protein Ycf2

4.8e-27

83.54

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Query:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL
        SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKNPF YLF+LFH+RNR G  L
Subjt:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

A0A2S1UDZ5 Protein Ycf2

3.7e-27

83.54

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Query:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL
        SFVPSR SENK++VN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKNPFIYLF+LFH+RNR G  L
Subjt:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

A0A3G6ILA3 Protein Ycf2

4.8e-27

83.54

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Query:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL
        SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKNPF YLF+LFH+RNR G  L
Subjt:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

SwissProt top hits

e value

%identity

Alignment

Q0ZIV6 Protein Ycf2

4.2e-28

81.01

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Query:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL
        SFVPSR SENK++VN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKNPF  LF+LFH+RNR G  L
Subjt:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

Q2QD30 Protein Ycf2

1.9e-28

82.28

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Query:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL
        SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDE DMDSS+KISFL KNPFIYLF+LFH+RNR G  L
Subjt:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

Q33BV3 Protein Ycf2

4.2e-28

81.01

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Query:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL
        SFVPSR SENK++VN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKNPF  LF+LFH+RNR G  L
Subjt:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

Q8S8U1 Protein Ycf2 B

4.2e-28

81.01

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Query:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL
        SFVPSR SENK++VN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKNPF  LF+LFH+RNR G  L
Subjt:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

Q8S8V2 Protein Ycf2 A

4.2e-28

81.01

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Query:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL
        SFVPSR SENK++VN FKIITYLQNTVSIHPISS   CDMVPKDEPDMDSS+KISFLNKNPF  LF+LFH+RNR G  L
Subjt:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

1.3e-27

79.75

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Query:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL
        SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDE DMDSS+KISFLNKNPF  LF+LFH R R G  L
Subjt:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

1.3e-27

79.75

Show/hide

Query:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL
        SFVPSR SENK+IVN FKIITYLQNTVSIHPISS   CDMVPKDE DMDSS+KISFLNKNPF  LF+LFH R R G  L
Subjt:  SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISS---CDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

Sequences

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CDS sequence

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TCTTTTGTCCCTTCCCGGCTATCAGAAAATAAAGATATAGTTAATACATTCAAGATAATTACGTATTTACAAAATACTGTTTCAATTCATCCTATTTCTTCATGTGATAT
GGTTCCGAAGGATGAACCGGATATGGATAGTTCCGATAAGATTTCATTCTTGAACAAAAATCCATTTATTTATTTATTTAATCTATTCCATAATCGAAACAGGATGGGAA
AAATATTA

mRNA sequence

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Protein sequence

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SFVPSRLSENKDIVNTFKIITYLQNTVSIHPISSCDMVPKDEPDMDSSDKISFLNKNPFIYLFNLFHNRNRMGKIL

MS013448 (gene) of Bitter gourd (TR) v1 genome