CuGenDBv2

Gene ID	MS013477
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cotton fiber protein
Genome location	scaffold402:1823212..1823754
RNA-Seq Expression	MS013477
Synteny	MS013477
Gene Ontology terms	NA
InterPro domains	IPR008480 - Protein of unknown function DUF761, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8653186.1 hypothetical protein Csa_020019 [Cucumis sativus]

6.3e-27

55.9

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Query:  ALFSSLASLILLSIIF--TFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQI---LQSSSLAVIVDEERETP
        A FSSL  L+ + IIF   FKNLSFSS LFNST FWFFISN L I IIA DY  +FS +Q+K    YEDY  S  N       LQ+SSL V+ DE+RETP
Subjt:  ALFSSLASLILLSIIF--TFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQI---LQSSSLAVIVDEERETP

Query:  EEKLQIVVGRRDFGS-----------CRRSKSEKPKR--------KTM-ERRSESVKYEAK--GEGNEFSKMTDEELNRRVEEFIQRINRQMRLQ
        +EKL+ VV  +   S             R KSEKPKR        K M +RRSESVK E K   + NEF+KMTDEELNRRVEEFIQR N+QMRLQ
Subjt:  EEKLQIVVGRRDFGS-----------CRRSKSEKPKR--------KTM-ERRSESVKYEAK--GEGNEFSKMTDEELNRRVEEFIQRINRQMRLQ

XP_022927149.1 uncharacterized protein LOC111434084 [Cucurbita moschata]

4.3e-28

56.45

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Query:  ALFSSLASLILLSIIFTFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQILQSSSLAVIVDEERETPEEKLQ
        A FSSL  L+LLS    FKNLSFSS LFNST FWFFISNAL I IIAADY   FS +Q KR   YE Y   N   T     +S  V+ DE+RE P+  LQ
Subjt:  ALFSSLASLILLSIIFTFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQILQSSSLAVIVDEERETPEEKLQ

Query:  IVVGRR----------DFGSCRRSKSEKPKR-------KTMERRSESVKYEAKG-EGNEFSKMTDEELNRRVEEFIQRINRQMRLQ
          V  R             + RRSKSEKPKR       K M +RSES KYE K  E NE+SKMTDEELNRRVEEFIQR N QMRL+
Subjt:  IVVGRR----------DFGSCRRSKSEKPKR-------KTMERRSESVKYEAKG-EGNEFSKMTDEELNRRVEEFIQRINRQMRLQ

XP_023001467.1 uncharacterized protein LOC111495593 [Cucurbita maxima]

4.8e-27

55.38

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Query:  ALFSSLASLILLSIIFTFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQILQSSSLAVIVDEERETPEEKLQ
        A FSSL  L LLS    FKNLSFSS LFNST FWFFISN L I IIAADY   FS +Q KR  FYE Y   N   T     +S  V+ +E+RE P+  LQ
Subjt:  ALFSSLASLILLSIIFTFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQILQSSSLAVIVDEERETPEEKLQ

Query:  IVVGRR----------DFGSCRRSKSEKPKR-------KTMERRSESVKYEAKG-EGNEFSKMTDEELNRRVEEFIQRINRQMRLQ
         +V  R             + +RSKSEKPKR       K M +RSES KYE K  E NE+SKMTDEELNRRVEEFIQR N QMRL+
Subjt:  IVVGRR----------DFGSCRRSKSEKPKR-------KTMERRSESVKYEAKG-EGNEFSKMTDEELNRRVEEFIQRINRQMRLQ

XP_023520225.1 uncharacterized protein LOC111783530 [Cucurbita pepo subsp. pepo]

1.2e-25

54.3

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Query:  ALFSSLASLILLSIIFTFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQILQSSSLAVIVDEERETPEEKLQ
        A FSSL  L+   II  FKNLSFSS LFNST FWFFISNAL I IIAADY   FS TQ KR   YE Y   N   T   + +S  V+ DE+RE P+  L+
Subjt:  ALFSSLASLILLSIIFTFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQILQSSSLAVIVDEERETPEEKLQ

Query:  IVVGRR----------DFGSCRRSKSEKPKR-------KTMERRSESVKYEAKG-EGNEFSKMTDEELNRRVEEFIQRINRQMRLQ
          V  R             +  RSKSEKPKR       K M +R ES  YE K  E NE+SKMTDEELNRRVEEFIQR N QMRL+
Subjt:  IVVGRR----------DFGSCRRSKSEKPKR-------KTMERRSESVKYEAKG-EGNEFSKMTDEELNRRVEEFIQRINRQMRLQ

XP_038877172.1 uncharacterized protein LOC120069472 [Benincasa hispida]

2.7e-30

56.68

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Query:  ALFSSLASLILLSIIF--TFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQILQSSSLAVIVDEERETPEEK
        A FSSL  L+ + IIF   FKNLS  S LFNST FWFFISN L I IIA DY  +FS  Q+K    YED+  SN         SS  V+ DE++ET  EK
Subjt:  ALFSSLASLILLSIIF--TFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQILQSSSLAVIVDEERETPEEK

Query:  LQIVVGRRDFGS---------CRRSKSEKPK-------RKTMERRSESVKYEAKG-EGNEFSKMTDEELNRRVEEFIQRINRQMRLQ
        L++VV  R   S         CRR KSEKPK        K M +RSESVKYEAK  E NEF KMTDEELNRRVEEFIQR NRQMRLQ
Subjt:  LQIVVGRRDFGS---------CRRSKSEKPK-------RKTMERRSESVKYEAKG-EGNEFSKMTDEELNRRVEEFIQRINRQMRLQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0M033 Uncharacterized protein

1.2e-20

53.99

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Query:  TNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQI---LQSSSLAVIVDEERETPEEKLQIVVGRRDFGS-----------CRRSKS
        T FWFFISN L I IIA DY  +FS +Q+K    YEDY  S  N       LQ+SSL V+ DE+RETP+EKL+ VV  +   S             R KS
Subjt:  TNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQI---LQSSSLAVIVDEERETPEEKLQIVVGRRDFGS-----------CRRSKS

Query:  EKPKR--------KTM-ERRSESVKYEAK--GEGNEFSKMTDEELNRRVEEFIQRINRQMRLQ
        EKPKR        K M +RRSESVK E K   + NEF+KMTDEELNRRVEEFIQR N+QMRLQ
Subjt:  EKPKR--------KTM-ERRSESVKYEAK--GEGNEFSKMTDEELNRRVEEFIQRINRQMRLQ

A0A2N9GT34 Uncharacterized protein

4.1e-16

44.1

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Query:  KSNNPPYKFAKGAALFSSLASL-ILLSIIFTFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQ--NQTQILQS--S
        KS+    + A G + ++ L S+ I +SI++ F NLS  S LFN+T FWFF+SN L ILIIA DY   +S ++ K+ DFY++YV   Q  N    +     
Subjt:  KSNNPPYKFAKGAALFSSLASL-ILLSIIFTFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQ--NQTQILQS--S

Query:  SLAVIVDEERETPEEKLQIVVGRRDFGSCRRSKSEKPKRKTME-------RRSESVKYEAKG--EGNEFSKMTDEELNRRVEEFIQRINRQMRLQ
        ++  +V+  +E  +EK+Q           RRSKSEK KR  ++       R SE+ K+E     E NEFS M+DEELNRRVEEFIQR NRQ+RLQ
Subjt:  SLAVIVDEERETPEEKLQIVVGRRDFGSCRRSKSEKPKRKTME-------RRSESVKYEAKG--EGNEFSKMTDEELNRRVEEFIQRINRQMRLQ

A0A6J1EH73 uncharacterized protein LOC111434084

2.1e-28

56.45

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Query:  ALFSSLASLILLSIIFTFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQILQSSSLAVIVDEERETPEEKLQ
        A FSSL  L+LLS    FKNLSFSS LFNST FWFFISNAL I IIAADY   FS +Q KR   YE Y   N   T     +S  V+ DE+RE P+  LQ
Subjt:  ALFSSLASLILLSIIFTFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQILQSSSLAVIVDEERETPEEKLQ

Query:  IVVGRR----------DFGSCRRSKSEKPKR-------KTMERRSESVKYEAKG-EGNEFSKMTDEELNRRVEEFIQRINRQMRLQ
          V  R             + RRSKSEKPKR       K M +RSES KYE K  E NE+SKMTDEELNRRVEEFIQR N QMRL+
Subjt:  IVVGRR----------DFGSCRRSKSEKPKR-------KTMERRSESVKYEAKG-EGNEFSKMTDEELNRRVEEFIQRINRQMRLQ

A0A6J1KGM0 uncharacterized protein LOC111495593

2.3e-27

55.38

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Query:  ALFSSLASLILLSIIFTFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQILQSSSLAVIVDEERETPEEKLQ
        A FSSL  L LLS    FKNLSFSS LFNST FWFFISN L I IIAADY   FS +Q KR  FYE Y   N   T     +S  V+ +E+RE P+  LQ
Subjt:  ALFSSLASLILLSIIFTFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQILQSSSLAVIVDEERETPEEKLQ

Query:  IVVGRR----------DFGSCRRSKSEKPKR-------KTMERRSESVKYEAKG-EGNEFSKMTDEELNRRVEEFIQRINRQMRLQ
         +V  R             + +RSKSEKPKR       K M +RSES KYE K  E NE+SKMTDEELNRRVEEFIQR N QMRL+
Subjt:  IVVGRR----------DFGSCRRSKSEKPKR-------KTMERRSESVKYEAKG-EGNEFSKMTDEELNRRVEEFIQRINRQMRLQ

A0A7J7CW61 Uncharacterized protein

1.8e-16

41.95

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Query:  KSNNPPYKFAKGAALFSSLASLIL-LSIIFTFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQILQSSSLAV
        K +  P K  KG + F  + S+++ +SI  TFK LS  S+LFN+T FWFFISN L ILII  DY   FS ++N   D YE++V       +   + SL V
Subjt:  KSNNPPYKFAKGAALFSSLASLIL-LSIIFTFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQILQSSSLAV

Query:  -IVDEERE--TPEEKLQIVVGRR-----DFGSCRRSKSEKPKR---------------KTMERRSESVKYEAKGEGNEFSKMTDEELNRRVEEFIQRINR
          V+E +E  T E   Q+V  ++     +    RRSKSE+ KR               +  E+  E   ++ +GE NEFS M++EELNRRVEEFIQR NR
Subjt:  -IVDEERE--TPEEKLQIVVGRR-----DFGSCRRSKSEKPKR---------------KTMERRSESVKYEAKGEGNEFSKMTDEELNRRVEEFIQRINR

Query:  QMRLQ
        Q+RLQ
Subjt:  QMRLQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G30190.1 unknown protein

1.4e-05

29.32

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Query:  NPPYKFAKGAALFSSLASLIL----LSIIFTFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDY-VSSNQNQTQILQSSSLA
        NP ++  K     SS+ ++ L      +IF    +S SS +F  T   FFISN L ILIIAADY   FS  +++  DFY +Y V++   + +    S + 
Subjt:  NPPYKFAKGAALFSSLASLIL----LSIIFTFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDY-VSSNQNQTQILQSSSLA

Query:  VIV---------------------DEERE---------TPEEKLQIVVGRR--------------------DFGSCR------------RSKSEKPKRKT
        V+                      +EE E         +P EK+  VV  +                       +C             RSKS+KP+RK 
Subjt:  VIV---------------------DEERE---------TPEEKLQIVVGRR--------------------DFGSCR------------RSKSEKPKRKT

Query:  MERRSESVKYEAKG---------------------EGNEFSKMTDEELNRRVEEFIQRINRQMRLQ
        +   +E+ K ++ G                     E  EFSK+++EELN+RVEEFIQR NRQ+R Q
Subjt:  MERRSESVKYEAKG---------------------EGNEFSKMTDEELNRRVEEFIQRINRQMRLQ

AT2G34610.1 unknown protein

1.4e-05

28.67

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Query:  PYKFAKGAALFSSLASLIL--LSIIFTFKNLSFSS-HLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQ---ILQSSSLAV
        PYK  K   L+SSL  +IL   + I  F  L  S   +FN T   F ISNALII IIAADY      T  + LDFY +Y ++ +   Q     + S   V
Subjt:  PYKFAKGAALFSSLASLIL--LSIIFTFKNLSFSS-HLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQ---ILQSSSLAV

Query:  IVDEERETPEEKLQIVVGRRDF------------------------------------------------GSCR-----------RSKSEKPKRKTM--E
         + EE +   EK +  VG RD                                                  +C            RSKS+K +   +  E
Subjt:  IVDEERETPEEKLQIVVGRRDF------------------------------------------------GSCR-----------RSKSEKPKRKTM--E

Query:  RRSESVKY------------------------------------EAKGEGNEFSKMTDEELNRRVEEFIQRINRQMRLQ
        RR + +K+                                      K E  EFSKM++EELNRRVE+FIQR NR ++ Q
Subjt:  RRSESVKY------------------------------------EAKGEGNEFSKMTDEELNRRVEEFIQRINRQMRLQ

Sequences

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CDS sequence

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AAATCAAATAATCCACCTTATAAATTTGCAAAGGGAGCAGCCCTCTTCTCTTCCCTAGCCTCCCTAATTCTTCTCTCCATTATCTTCACCTTCAAAAACCTCTCTTTTTC
ATCTCATCTCTTCAACAGCACCAACTTCTGGTTCTTCATTTCCAACGCCCTCATAATTCTCATCATAGCCGCTGATTATAATCGCATTTTCTCTCCCACCCAAAACAAAA
GACTCGATTTTTATGAAGATTACGTATCCTCCAATCAAAACCAAACTCAGATACTTCAAAGTTCTTCACTGGCAGTAATAGTTGATGAAGAGAGAGAAACCCCAGAAGAG
AAATTGCAAATCGTGGTTGGAAGACGCGATTTTGGGTCTTGCCGGCGAAGCAAGTCGGAGAAACCCAAGAGAAAAACCATGGAGAGGAGGTCGGAAAGTGTAAAATACGA
AGCAAAGGGAGAAGGAAATGAGTTCTCAAAGATGACAGATGAAGAATTGAATAGAAGGGTGGAGGAATTTATTCAAAGAATTAATAGACAAATGAGACTTCAA

mRNA sequence

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Protein sequence

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KSNNPPYKFAKGAALFSSLASLILLSIIFTFKNLSFSSHLFNSTNFWFFISNALIILIIAADYNRIFSPTQNKRLDFYEDYVSSNQNQTQILQSSSLAVIVDEERETPEE
KLQIVVGRRDFGSCRRSKSEKPKRKTMERRSESVKYEAKGEGNEFSKMTDEELNRRVEEFIQRINRQMRLQ

MS013477 (gene) of Bitter gourd (TR) v1 genome