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MS013489 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013489
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationscaffold402:1921660..1922298
RNA-Seq ExpressionMS013489
SyntenyMS013489
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583907.1 hypothetical protein SDJN03_19839, partial [Cucurbita argyrosperma subsp. sororia]2.5e-6763.56Show/hide
Query:  VEKRLKLEHGSLQNEAVRE-------------GNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLD
        VEKRLKL+H S Q +A+R              G++SS E+SLS+PM+LHLPQTN TS L ESSEPP EFLS+S +      KSESN P  +D G N+P+D
Subjt:  VEKRLKLEHGSLQNEAVRE-------------GNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLD

Query:  DIQRLIQLLGLGDLYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFAS
        DIQRL+QLLGLGD + E+ LG R             CNGC GCE+GFYSKIVGLKGPKCGKEVERL+GWI Y  NGGGE ERLEPLRLAYLL+GKA FAS
Subjt:  DIQRLIQLLGLGDLYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFAS

Query:  HNADEFFEGLEFPSTVEDFLLNDPP
        + +D   EGLEFPSTVEDFLLNDPP
Subjt:  HNADEFFEGLEFPSTVEDFLLNDPP

KGN65550.1 hypothetical protein Csa_019856 [Cucumis sativus]5.0e-6864.84Show/hide
Query:  VEKRLKLEHGSLQNE-------AVREGNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLDDIQRLI
        VEKRLKL+H S ++         VR  ++S+ EDSLS+PM+LH PQTN +S L ESS+ PLEFLSSS + P S PKSESN PKP+D GQN+ +DDIQRLI
Subjt:  VEKRLKLEHGSLQNE-------AVREGNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLDDIQRLI

Query:  QLLGLGDLYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFASHNADEF
        QLLGL D   EK  G +             CNGC GCE+GFYSKIVGLKGPKC KEVERL+GWI +F NGG EE+RLEPLRLAYLLLGKA FAS++ D  
Subjt:  QLLGLGDLYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFASHNADEF

Query:  FEGLEFPSTVEDFLLNDPP
         EGLEFPSTVEDFLLNDPP
Subjt:  FEGLEFPSTVEDFLLNDPP

XP_004147438.2 uncharacterized protein LOC101217056 [Cucumis sativus]5.0e-6864.84Show/hide
Query:  VEKRLKLEHGSLQNE-------AVREGNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLDDIQRLI
        VEKRLKL+H S ++         VR  ++S+ EDSLS+PM+LH PQTN +S L ESS+ PLEFLSSS + P S PKSESN PKP+D GQN+ +DDIQRLI
Subjt:  VEKRLKLEHGSLQNE-------AVREGNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLDDIQRLI

Query:  QLLGLGDLYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFASHNADEF
        QLLGL D   EK  G +             CNGC GCE+GFYSKIVGLKGPKC KEVERL+GWI +F NGG EE+RLEPLRLAYLLLGKA FAS++ D  
Subjt:  QLLGLGDLYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFASHNADEF

Query:  FEGLEFPSTVEDFLLNDPP
         EGLEFPSTVEDFLLNDPP
Subjt:  FEGLEFPSTVEDFLLNDPP

XP_022139930.1 uncharacterized protein LOC111010724 [Momordica charantia]1.8e-118100Show/hide
Query:  VEKRLKLEHGSLQNEAVREGNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLDDIQRLIQLLGLGD
        VEKRLKLEHGSLQNEAVREGNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLDDIQRLIQLLGLGD
Subjt:  VEKRLKLEHGSLQNEAVREGNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLDDIQRLIQLLGLGD

Query:  LYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFASHNADEFFEGLEFP
        LYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFASHNADEFFEGLEFP
Subjt:  LYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFASHNADEFFEGLEFP

Query:  STVEDFLLNDPPG
        STVEDFLLNDPPG
Subjt:  STVEDFLLNDPPG

XP_022927255.1 uncharacterized protein LOC111434155 [Cucurbita moschata]9.5e-6763.11Show/hide
Query:  VEKRLKLEHGSLQNEAVRE-------------GNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLD
        VEKRLKL++ S Q +A+R               ++SS E+SLS+PM+LHLPQTN TS L ESSEPP EFLS+S +      KSESN P  +D GQN+P+D
Subjt:  VEKRLKLEHGSLQNEAVRE-------------GNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLD

Query:  DIQRLIQLLGLGDLYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFAS
        DIQRL+QLLGLGD + E+ LG R             CNGC GCE+GFYSKIVGLKGPKCGKEVERL+GWI+YF  GGGE ERLEPLRLAYLL+GKA FAS
Subjt:  DIQRLIQLLGLGDLYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFAS

Query:  HNADEFFEGLEFPSTVEDFLLNDPP
        + +D   EGLEFPSTVEDFLLNDPP
Subjt:  HNADEFFEGLEFPSTVEDFLLNDPP

TrEMBL top hitse value%identityAlignment
A0A0A0LUG6 Uncharacterized protein2.4e-6864.84Show/hide
Query:  VEKRLKLEHGSLQNE-------AVREGNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLDDIQRLI
        VEKRLKL+H S ++         VR  ++S+ EDSLS+PM+LH PQTN +S L ESS+ PLEFLSSS + P S PKSESN PKP+D GQN+ +DDIQRLI
Subjt:  VEKRLKLEHGSLQNE-------AVREGNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLDDIQRLI

Query:  QLLGLGDLYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFASHNADEF
        QLLGL D   EK  G +             CNGC GCE+GFYSKIVGLKGPKC KEVERL+GWI +F NGG EE+RLEPLRLAYLLLGKA FAS++ D  
Subjt:  QLLGLGDLYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFASHNADEF

Query:  FEGLEFPSTVEDFLLNDPP
         EGLEFPSTVEDFLLNDPP
Subjt:  FEGLEFPSTVEDFLLNDPP

A0A5A7UHE6 Uncharacterized protein1.3e-6463.8Show/hide
Query:  VEKRLKLEHGSLQNEAVR-------EGNASSA--EDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLDDIQR
        VEKRLKL+H S Q + +        + NASS+  ED LS+PM+LH PQTN +S L ESS+PPLEFLS+    P S PKS SN P  +D GQN+ LDDIQR
Subjt:  VEKRLKLEHGSLQNEAVR-------EGNASSA--EDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLDDIQR

Query:  LIQLLGLGDLYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFASHNAD
        LIQLLGL D   EK LG +             CNGC GCE+GFYSKIVGLKGPKC KEVERL+GWI +F NGGGEE+RLEPLRLAYLLLGKA FAS+  D
Subjt:  LIQLLGLGDLYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFASHNAD

Query:  EFFEGLEFPSTVEDFLLNDPP
           +GLEFPSTVEDFLLNDPP
Subjt:  EFFEGLEFPSTVEDFLLNDPP

A0A6J1CGU3 uncharacterized protein LOC1110107248.8e-119100Show/hide
Query:  VEKRLKLEHGSLQNEAVREGNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLDDIQRLIQLLGLGD
        VEKRLKLEHGSLQNEAVREGNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLDDIQRLIQLLGLGD
Subjt:  VEKRLKLEHGSLQNEAVREGNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLDDIQRLIQLLGLGD

Query:  LYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFASHNADEFFEGLEFP
        LYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFASHNADEFFEGLEFP
Subjt:  LYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFASHNADEFFEGLEFP

Query:  STVEDFLLNDPPG
        STVEDFLLNDPPG
Subjt:  STVEDFLLNDPPG

A0A6J1END4 uncharacterized protein LOC1114341554.6e-6763.11Show/hide
Query:  VEKRLKLEHGSLQNEAVRE-------------GNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLD
        VEKRLKL++ S Q +A+R               ++SS E+SLS+PM+LHLPQTN TS L ESSEPP EFLS+S +      KSESN P  +D GQN+P+D
Subjt:  VEKRLKLEHGSLQNEAVRE-------------GNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLD

Query:  DIQRLIQLLGLGDLYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFAS
        DIQRL+QLLGLGD + E+ LG R             CNGC GCE+GFYSKIVGLKGPKCGKEVERL+GWI+YF  GGGE ERLEPLRLAYLL+GKA FAS
Subjt:  DIQRLIQLLGLGDLYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFAS

Query:  HNADEFFEGLEFPSTVEDFLLNDPP
        + +D   EGLEFPSTVEDFLLNDPP
Subjt:  HNADEFFEGLEFPSTVEDFLLNDPP

A0A6J1KGL6 uncharacterized protein LOC1114955902.5e-6562.22Show/hide
Query:  VEKRLKLEHGSLQNEAVRE-------------GNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLD
        VEKRLKL++ S Q +A+R               ++SS E+SLS+PM+LHL QTN  S L ESSEPP EFLS+S +      KSESN P  +D GQN+P+D
Subjt:  VEKRLKLEHGSLQNEAVRE-------------GNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLD

Query:  DIQRLIQLLGLGDLYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFAS
        DIQRL+QLLG GD + EK LG R             CNGC GCE+GFYSKIVGLKGPKCGKEVERL+GWI YF  GGGE ERLEPLRLAYLL+GKA FAS
Subjt:  DIQRLIQLLGLGDLYGEKALGVRRDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFAS

Query:  HNADEFFEGLEFPSTVEDFLLNDPP
        +  D   EGLEFPSTVEDFLLNDPP
Subjt:  HNADEFFEGLEFPSTVEDFLLNDPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTTGAAAAACGGCTTAAATTGGAGCATGGATCGCTACAAAACGAGGCTGTTCGAGAAGGCAATGCTTCATCAGCCGAAGACTCACTGAGCTCTCCCATGTTTCTTCATTT
GCCCCAAACCAACGACACCTCCATGCTCCACGAAAGCAGCGAACCTCCGCTCGAGTTCCTCTCATCTTCCCCTGAATTTCCGCTATCCCCTCCAAAATCGGAATCCAATC
ATCCGAAGCCCGTCGATTTTGGCCAAAATCAGCCGCTAGATGACATCCAACGCCTGATTCAACTCCTAGGGCTTGGAGATTTATATGGCGAAAAAGCATTGGGAGTGAGA
AGAGACGCGATTGATCCAGGAGCGAGGAGTAGCTGTAGCTGTAATGGCTGCGGGGGTTGTGAAAACGGGTTTTACAGCAAGATCGTTGGGCTGAAAGGCCCCAAATGTGG
GAAGGAAGTGGAGAGGCTTGACGGATGGATTAATTACTTCTTGAATGGTGGCGGTGAGGAGGAGAGGTTAGAGCCTCTTAGATTGGCGTACTTGCTGCTGGGTAAGGCTG
CTTTTGCTTCTCACAACGCTGATGAATTTTTTGAAGGATTGGAATTCCCATCAACTGTAGAGGATTTCTTGCTCAATGATCCTCCCGGA
mRNA sequenceShow/hide mRNA sequence
GTTGAAAAACGGCTTAAATTGGAGCATGGATCGCTACAAAACGAGGCTGTTCGAGAAGGCAATGCTTCATCAGCCGAAGACTCACTGAGCTCTCCCATGTTTCTTCATTT
GCCCCAAACCAACGACACCTCCATGCTCCACGAAAGCAGCGAACCTCCGCTCGAGTTCCTCTCATCTTCCCCTGAATTTCCGCTATCCCCTCCAAAATCGGAATCCAATC
ATCCGAAGCCCGTCGATTTTGGCCAAAATCAGCCGCTAGATGACATCCAACGCCTGATTCAACTCCTAGGGCTTGGAGATTTATATGGCGAAAAAGCATTGGGAGTGAGA
AGAGACGCGATTGATCCAGGAGCGAGGAGTAGCTGTAGCTGTAATGGCTGCGGGGGTTGTGAAAACGGGTTTTACAGCAAGATCGTTGGGCTGAAAGGCCCCAAATGTGG
GAAGGAAGTGGAGAGGCTTGACGGATGGATTAATTACTTCTTGAATGGTGGCGGTGAGGAGGAGAGGTTAGAGCCTCTTAGATTGGCGTACTTGCTGCTGGGTAAGGCTG
CTTTTGCTTCTCACAACGCTGATGAATTTTTTGAAGGATTGGAATTCCCATCAACTGTAGAGGATTTCTTGCTCAATGATCCTCCCGGA
Protein sequenceShow/hide protein sequence
VEKRLKLEHGSLQNEAVREGNASSAEDSLSSPMFLHLPQTNDTSMLHESSEPPLEFLSSSPEFPLSPPKSESNHPKPVDFGQNQPLDDIQRLIQLLGLGDLYGEKALGVR
RDAIDPGARSSCSCNGCGGCENGFYSKIVGLKGPKCGKEVERLDGWINYFLNGGGEEERLEPLRLAYLLLGKAAFASHNADEFFEGLEFPSTVEDFLLNDPPG