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MS013503 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013503
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60S ribosomal protein L18a-like protein
Genome locationscaffold402:2025185..2027863
RNA-Seq ExpressionMS013503
SyntenyMS013503
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044804 - AT1G29970-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147407.1 60S ribosomal protein L18a-like protein [Cucumis sativus]5.8e-6587.14Show/hide
Query:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW
        MSGDGK++ V GDP SQYHYGTFQGVANYY S  QPQPQPQP SVVGFPQPVA P VSG  P YHGHLGYQAVPVQGYAI+EGRP+QEARLPCCGIGMGW
Subjt:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW

Query:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA
        FLF+IGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC IA
Subjt:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA

XP_008444018.1 PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]3.1e-6688.57Show/hide
Query:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW
        MSGDGK+S V GDP SQYHYGTFQGVANYY S  QPQPQPQP SVVGFPQPVAPP VSG  P YHGHLGYQAVPVQGYAI+EGRP+QEARLPCCGIGMGW
Subjt:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW

Query:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA
        FLF+IGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC IA
Subjt:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA

XP_022140257.1 60S ribosomal protein L18a-like protein [Momordica charantia]8.7e-77100Show/hide
Query:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW
        MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW
Subjt:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW

Query:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA
        FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA
Subjt:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA

XP_022927552.1 60S ribosomal protein L18a-like protein [Cucurbita moschata]9.3e-6385Show/hide
Query:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW
        MSGDGK+SAV GDPQSQYHYGTFQGVANYY SA +PQPQP P SVVGFP  VAPPR    HP YHGHL YQAVPVQGYAIIEGRP+ EARLPCCGIGMGW
Subjt:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW

Query:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA
        FLF+IGFFLGGIPWYVGAF+VLFVRVDYREKPGY+AC IA
Subjt:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA

XP_023519744.1 60S ribosomal protein L18a-like protein [Cucurbita pepo subsp. pepo]2.7e-6285Show/hide
Query:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW
        MSGDGK+SAV GDPQSQYHYGTFQGVANYY SA QPQPQP P SVVGFP  VAPPR    HP YHGHL YQAVPVQGYAIIEG P+ EARLPCCGIGMGW
Subjt:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW

Query:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA
        FLF+IGFFLGGIPWYVGAF+VLFVRVDYREKPGY+AC IA
Subjt:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA

TrEMBL top hitse value%identityAlignment
A0A0A0M051 Uncharacterized protein2.8e-6587.14Show/hide
Query:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW
        MSGDGK++ V GDP SQYHYGTFQGVANYY S  QPQPQPQP SVVGFPQPVA P VSG  P YHGHLGYQAVPVQGYAI+EGRP+QEARLPCCGIGMGW
Subjt:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW

Query:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA
        FLF+IGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC IA
Subjt:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA

A0A1S3B9D9 60S ribosomal protein L18a-like protein1.5e-6688.57Show/hide
Query:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW
        MSGDGK+S V GDP SQYHYGTFQGVANYY S  QPQPQPQP SVVGFPQPVAPP VSG  P YHGHLGYQAVPVQGYAI+EGRP+QEARLPCCGIGMGW
Subjt:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW

Query:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA
        FLF+IGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC IA
Subjt:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA

A0A6J1CGC1 60S ribosomal protein L18a-like protein4.2e-77100Show/hide
Query:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW
        MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW
Subjt:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW

Query:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA
        FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA
Subjt:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA

A0A6J1EHH7 60S ribosomal protein L18a-like protein4.5e-6385Show/hide
Query:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW
        MSGDGK+SAV GDPQSQYHYGTFQGVANYY SA +PQPQP P SVVGFP  VAPPR    HP YHGHL YQAVPVQGYAIIEGRP+ EARLPCCGIGMGW
Subjt:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW

Query:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA
        FLF+IGFFLGGIPWYVGAF+VLFVRVDYREKPGY+AC IA
Subjt:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA

A0A6J1KIR0 60S ribosomal protein L18a-like protein2.2e-6285Show/hide
Query:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW
        MS DGK+SAV GDPQSQYHYGTFQGVANYY SA QPQPQP P SVVGFP  VAPPR    HP YHGHL YQAVPVQGYAIIEGRP+ EARLPCCGIGMGW
Subjt:  MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGW

Query:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA
        FLF+IGFFLGGIPWYVGAF+VLFVRVDYREKPGY+AC IA
Subjt:  FLFVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA

SwissProt top hitse value%identityAlignment
Q8L9S1 60S ribosomal protein L18a-like protein1.5e-2652.99Show/hide
Query:  QSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYH--GHLG----YQAVP--VQGYAIIEGRPYQEARLPCCGIGMGWFLFVIG
        Q QY+YGTFQGVAN+      P P P P     F QP  P      H Y +  GH G     Q  P  V  Y ++E RP  E  LPCCG+GMGWFLF++G
Subjt:  QSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYH--GHLG----YQAVP--VQGYAIIEGRPYQEARLPCCGIGMGWFLFVIG

Query:  FFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA
        F  GGIPWY+GAFIVL   VD+REK GYVAC IA
Subjt:  FFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA

Arabidopsis top hitse value%identityAlignment
AT1G17080.1 Ribosomal protein L18ae family2.3e-3556.12Show/hide
Query:  DGKNSAVLGDPQSQYH-YGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFL
        + K+     +  +Q+H YGTFQGV+NY      P PQ     V GFPQP APP V      Y+ H GYQ VPV G  + EGRP ++ RLPCCGIG+GWFL
Subjt:  DGKNSAVLGDPQSQYH-YGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFL

Query:  FVIGFFLGGIPWYVGAFIVLF-VRVDYREKPGYVACVIA
        F++GFFLG IPWYVG FI++F  R+DYREKPGY+AC IA
Subjt:  FVIGFFLGGIPWYVGAFIVLF-VRVDYREKPGYVACVIA

AT1G29970.1 60S ribosomal protein L18A-11.0e-2752.99Show/hide
Query:  QSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYH--GHLG----YQAVP--VQGYAIIEGRPYQEARLPCCGIGMGWFLFVIG
        Q QY+YGTFQGVAN+      P P P P     F QP  P      H Y +  GH G     Q  P  V  Y ++E RP  E  LPCCG+GMGWFLF++G
Subjt:  QSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYH--GHLG----YQAVP--VQGYAIIEGRPYQEARLPCCGIGMGWFLFVIG

Query:  FFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA
        F  GGIPWY+GAFIVL   VD+REK GYVAC IA
Subjt:  FFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA

AT1G29970.2 60S ribosomal protein L18A-11.0e-2752.99Show/hide
Query:  QSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYH--GHLG----YQAVP--VQGYAIIEGRPYQEARLPCCGIGMGWFLFVIG
        Q QY+YGTFQGVAN+      P P P P     F QP  P      H Y +  GH G     Q  P  V  Y ++E RP  E  LPCCG+GMGWFLF++G
Subjt:  QSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYH--GHLG----YQAVP--VQGYAIIEGRPYQEARLPCCGIGMGWFLFVIG

Query:  FFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA
        F  GGIPWY+GAFIVL   VD+REK GYVAC IA
Subjt:  FFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA

AT1G29970.3 60S ribosomal protein L18A-11.5e-2140.34Show/hide
Query:  QSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYH--GHLG----YQAVP--VQGYAIIEGRPYQEARLPCCGIGMGWFL----
        Q QY+YGTFQGVAN+      P P P P     F QP  P      H Y +  GH G     Q  P  V  Y ++E RP  E  LPCCG+GMGWFL    
Subjt:  QSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYH--GHLG----YQAVP--VQGYAIIEGRPYQEARLPCCGIGMGWFL----

Query:  --------------------------------------FVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA
                                              F++GF  GGIPWY+GAFIVL   VD+REK GYVAC IA
Subjt:  --------------------------------------FVIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACVIA

AT1G53560.1 Ribosomal protein L18ae family1.7e-3056.56Show/hide
Query:  YGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQA-VPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGA
        YGTFQGV   YP  S P P P  H V+G PQP  PP    PH     H   Q    V GY + +GRP ++ RLPCCG+G+GWFLF+IGF LG IPWYVG 
Subjt:  YGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQA-VPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLGGIPWYVGA

Query:  FIVLFVRVDYREKPGYVACVIA
        FI++  R+D REKPGYVAC IA
Subjt:  FIVLFVRVDYREKPGYVACVIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGCGACGGGAAAAACAGCGCGGTATTGGGCGATCCACAGAGTCAATACCATTACGGTACGTTTCAGGGTGTCGCAAACTATTATCCTTCTGCCTCACAGCCGCA
GCCGCAGCCGCAACCCCATTCTGTCGTTGGTTTCCCTCAACCGGTTGCGCCGCCCCGAGTTTCTGGCCCTCACCCATATTACCATGGACATCTGGGTTACCAAGCCGTCC
CGGTTCAAGGTTATGCTATTATTGAGGGAAGACCTTATCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTTTGTAATTGGGTTCTTTCTTGGT
GGCATTCCTTGGTATGTTGGAGCTTTTATCGTACTCTTTGTACGAGTGGATTACCGAGAAAAGCCTGGATATGTTGCATGCGTAATCGCA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGGCGACGGGAAAAACAGCGCGGTATTGGGCGATCCACAGAGTCAATACCATTACGGTACGTTTCAGGGTGTCGCAAACTATTATCCTTCTGCCTCACAGCCGCA
GCCGCAGCCGCAACCCCATTCTGTCGTTGGTTTCCCTCAACCGGTTGCGCCGCCCCGAGTTTCTGGCCCTCACCCATATTACCATGGACATCTGGGTTACCAAGCCGTCC
CGGTTCAAGGTTATGCTATTATTGAGGGAAGACCTTATCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTTTGTAATTGGGTTCTTTCTTGGT
GGCATTCCTTGGTATGTTGGAGCTTTTATCGTACTCTTTGTACGAGTGGATTACCGAGAAAAGCCTGGATATGTTGCATGCGTAATCGCA
Protein sequenceShow/hide protein sequence
MSGDGKNSAVLGDPQSQYHYGTFQGVANYYPSASQPQPQPQPHSVVGFPQPVAPPRVSGPHPYYHGHLGYQAVPVQGYAIIEGRPYQEARLPCCGIGMGWFLFVIGFFLG
GIPWYVGAFIVLFVRVDYREKPGYVACVIA