CuGenDBv2

Gene ID	MS013554
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II CP43 reaction center protein
Genome location	scaffold402:2395471..2395572
RNA-Seq Expression	MS013554
Synteny	MS013554
Gene Ontology terms	GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0016168 - chlorophyll binding (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ADZ93629.1 photosystem II CP43 protein, partial [Luzula parviflora subsp. parviflora]

8.8e-07

85.29

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Query:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA
        MKTLYSL+RFY V+TLFNGTLALAGYD+ETT FA
Subjt:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA

KAF4381799.1 hypothetical protein F8388_008975 [Cannabis sativa]

2.5e-06

85.29

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Query:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA
        MKTLYSL+RFYRV+TLFNGTLALAG D+ETT FA
Subjt:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA

QBC72606.1 photosystem II CP43 chlorophyll apoprotein [Simmondsia chinensis]

5.7e-06

82.35

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Query:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA
        MKTLYSL+RFY V+TLFNGTLALAG+D+ETT FA
Subjt:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA

YP_009556257.1 photosystem II CP43 chlorophyll apoprotein [Simmondsia chinensis]

5.7e-06

82.35

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Query:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA
        MKTLYSL+RFY V+TLFNGTLALAG+D+ETT FA
Subjt:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA

YP_009569351.1 photosystem II CP43 chlorophyll apoprotein [Cyathula capitata]

4.3e-06

82.35

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Query:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA
        MKTLYSL+RFY V+TLFNGTL LAGYD+ETT FA
Subjt:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA

TrEMBL top hits

e value

%identity

Alignment

A0A411JQD4 Photosystem II CP43 reaction center protein

2.1e-06

82.35

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Query:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA
        MKTLYSL+RFY V+TLFNGTL LAGYD+ETT FA
Subjt:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA

A0A411JYE4 Photosystem II CP43 reaction center protein

2.7e-06

82.35

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Query:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA
        MKTLYSL+RFY V+TLFNGTLALAG+D+ETT FA
Subjt:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA

A0A411K5K5 Photosystem II CP43 reaction center protein

2.7e-06

82.35

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Query:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA
        MKTLYSL+RFY V+TLFNGTLALAG+D+ETT FA
Subjt:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA

A0A7J6GI60 Uncharacterized protein

1.2e-06

85.29

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Query:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA
        MKTLYSL+RFYRV+TLFNGTLALAG D+ETT FA
Subjt:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA

H8PFI9 Photosystem II CP43 reaction center protein (Fragment)

4.2e-07

85.29

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Query:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA
        MKTLYSL+RFY V+TLFNGTLALAGYD+ETT FA
Subjt:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA

SwissProt top hits

e value

%identity

Alignment

A4QJB1 Photosystem II CP43 reaction center protein

1.3e-08

82.35

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Query:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA
        MKTLYSL+RFY V+TLFNGTLALAG D+ETT FA
Subjt:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA

A4QJJ5 Photosystem II CP43 reaction center protein

1.3e-08

82.35

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Query:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA
        MKTLYSL+RFY V+TLFNGTLALAG D+ETT FA
Subjt:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA

A4QK14 Photosystem II CP43 reaction center protein

1.3e-08

82.35

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Query:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA
        MKTLYSL+RFY V+TLFNGTLALAG D+ETT FA
Subjt:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA

P56778 Photosystem II CP43 reaction center protein

1.3e-08

82.35

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Query:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA
        MKTLYSL+RFY V+TLFNGTLALAG D+ETT FA
Subjt:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA

Q8S8X7 Photosystem II CP43 reaction center protein

1.3e-08

82.35

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Query:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA
        MKTLYSL+RFY V+TLFNGTLALAG D+ETT FA
Subjt:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA

Arabidopsis top hits

e value

%identity

Alignment

ATCG00280.1 photosystem II reaction center protein C

9.0e-10

82.35

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Query:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA
        MKTLYSL+RFY V+TLFNGTLALAG D+ETT FA
Subjt:  MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA

Sequences

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CDS sequence

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ATGAAAACTTTATATTCCCTGAAGAGGTTCTACCGTGTACAAACACTTTTTAATGGAACTTTAGCTTTAGCTGGTTATGACAAAGAAACCACATGTTTCGCT

mRNA sequence

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ATGAAAACTTTATATTCCCTGAAGAGGTTCTACCGTGTACAAACACTTTTTAATGGAACTTTAGCTTTAGCTGGTTATGACAAAGAAACCACATGTTTCGCT

Protein sequence

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MKTLYSLKRFYRVQTLFNGTLALAGYDKETTCFA

MS013554 (gene) of Bitter gourd (TR) v1 genome