; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013558 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013558
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDUF4228 domain-containing protein
Genome locationscaffold402:2422774..2423313
RNA-Seq ExpressionMS013558
SyntenyMS013558
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR025322 - Protein of unknown function DUF4228, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583958.1 hypothetical protein SDJN03_19890, partial [Cucurbita argyrosperma subsp. sororia]5.8e-6571.79Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSS-SPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPN---P
        M+NSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKA DVMKAHPKHVLK+PSS S +AA  D ++ALPKIV+VPPEA LQRGKIYFLMPLPPN   P
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSS-SPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPN---P

Query:  RSRTSTARRNKVKNNNPDNNINNNSQRNGAVP-------------DNAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT
        RSR+S+ R+ +V NNN  NN +++     A               +N+ISM+NLL+SDQYL+EILSEKASTHRERRRGRVGVWRPHLESICESP+
Subjt:  RSRTSTARRNKVKNNNPDNNINNNSQRNGAVP-------------DNAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT

KAG7019577.1 hypothetical protein SDJN02_18538, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-6470.71Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSS-SPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPN---P
        M+NSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKA DVMKAHPKHVLK+PSS S +AA  D ++ALPKIV+VPPEA LQRGKIYFLMPLPPN   P
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSS-SPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPN---P

Query:  RSRTSTARRNKVKNNNPDNNINNNSQRNGAVP----------------DNAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT
        RSR+S+ R+ +V NNN  NN +++     A                  +N+ISM+NLL+SDQYL+EILSEKASTHRERRRGRVGVWRPHLESICESP+
Subjt:  RSRTSTARRNKVKNNNPDNNINNNSQRNGAVP----------------DNAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT

KGN65978.2 hypothetical protein Csa_019723 [Cucumis sativus]1.9e-6372.93Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSSSPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPNPRSRT
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKA DVMKAHPKHVLK+PSS  ++A HD+++ALPKIV+VPPEA LQRGKIYFLMPLPP+P    
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSSSPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPNPRSRT

Query:  STARRNKVKNNNPDNNINNNSQRNGAVPD---NAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT
           RR K + +N  +     +    AVPD   N+ISMTNLL+SD YL+EILS+KASTHRERRRGRVGVWRPHL+SICESP+
Subjt:  STARRNKVKNNNPDNNINNNSQRNGAVPD---NAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT

XP_004150211.1 uncharacterized protein LOC101205379 [Cucumis sativus]1.9e-6372.93Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSSSPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPNPRSRT
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKA DVMKAHPKHVLK+PSS  ++A HD+++ALPKIV+VPPEA LQRGKIYFLMPLPP+P    
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSSSPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPNPRSRT

Query:  STARRNKVKNNNPDNNINNNSQRNGAVPD---NAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT
           RR K + +N  +     +    AVPD   N+ISMTNLL+SD YL+EILS+KASTHRERRRGRVGVWRPHL+SICESP+
Subjt:  STARRNKVKNNNPDNNINNNSQRNGAVPD---NAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT

XP_023001645.1 rhoGEF domain-containing protein gxcI-like [Cucurbita maxima]2.4e-6370.05Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSS-SPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPN---P
        M+NSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKA DVMKAHPKHVLK+PSS S +AA  D ++ALPKIV+VPPEA LQRGKIYFLMPLPPN   P
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSS-SPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPN---P

Query:  RSRTSTARRNKVKNNNPDNNINNNSQRNGAVP---------------DNAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT
        RSR+S+ R+ +V NNN  NN +++     A+                +++ISM+NL +SDQYL+EILSEKASTHRERRRGRVGVWRPHLESICESP+
Subjt:  RSRTSTARRNKVKNNNPDNNINNNSQRNGAVP---------------DNAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT

TrEMBL top hitse value%identityAlignment
A0A0A0M094 Uncharacterized protein9.0e-6472.93Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSSSPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPNPRSRT
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKA DVMKAHPKHVLK+PSS  ++A HD+++ALPKIV+VPPEA LQRGKIYFLMPLPP+P    
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSSSPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPNPRSRT

Query:  STARRNKVKNNNPDNNINNNSQRNGAVPD---NAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT
           RR K + +N  +     +    AVPD   N+ISMTNLL+SD YL+EILS+KASTHRERRRGRVGVWRPHL+SICESP+
Subjt:  STARRNKVKNNNPDNNINNNSQRNGAVPD---NAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT

A0A1S3B8G2 uncharacterized protein LOC1034869132.9e-6271.74Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSS-SPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPNPRSR
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKA DVMKAHPKHVLK+PSS S ++A HD++++LPKIV+VPPEA LQRGKIYFLMPLPP+P   
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSS-SPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPNPRSR

Query:  TSTARRNKVKNNNPDNNINNNSQRNGAVPD-----NAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT
            RR K +++N  +     +    AVPD     N ISMTNLL+SD YL+EILS+KASTHRERRRGRVGVWRPHL+SICESP+
Subjt:  TSTARRNKVKNNNPDNNINNNSQRNGAVPD-----NAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT

A0A2P6Q4P8 Uncharacterized protein8.1e-5765.17Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSSSPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPNPRSRT
        MKN+IRCCISCILPCGALDVIR+VH NG VEEISGSI+A ++MKAHPKHVLK+PSSSP+    D    +PKIV+VPP+A+LQRGKIYFLMP+P    +++
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSSSPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPNPRSRT

Query:  STARRNKVKNNNPDNNINNNSQRNGAVPDNAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT
        +  ++ KV+  N D        +  +V  N+I+MTNLL+SDQYL+EILSEK ST R+RRRGRVGVWRPHLESICESP+
Subjt:  STARRNKVKNNNPDNNINNNSQRNGAVPDNAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT

A0A5A7UMG1 DUF4228 domain-containing protein2.9e-6271.74Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSS-SPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPNPRSR
        MKNSIRCCISCILPCGALDVIRIVHSNGYVEEI+GSIKA DVMKAHPKHVLK+PSS S ++A HD++++LPKIV+VPPEA LQRGKIYFLMPLPP+P   
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSS-SPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPNPRSR

Query:  TSTARRNKVKNNNPDNNINNNSQRNGAVPD-----NAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT
            RR K +++N  +     +    AVPD     N ISMTNLL+SD YL+EILS+KASTHRERRRGRVGVWRPHL+SICESP+
Subjt:  TSTARRNKVKNNNPDNNINNNSQRNGAVPD-----NAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT

A0A6J1KLR7 rhoGEF domain-containing protein gxcI-like1.2e-6370.05Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSS-SPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPN---P
        M+NSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKA DVMKAHPKHVLK+PSS S +AA  D ++ALPKIV+VPPEA LQRGKIYFLMPLPPN   P
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSS-SPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPN---P

Query:  RSRTSTARRNKVKNNNPDNNINNNSQRNGAVP---------------DNAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT
        RSR+S+ R+ +V NNN  NN +++     A+                +++ISM+NL +SDQYL+EILSEKASTHRERRRGRVGVWRPHLESICESP+
Subjt:  RSRTSTARRNKVKNNNPDNNINNNSQRNGAVP---------------DNAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G06980.1 unknown protein4.6e-2842.39Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSSSPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMP---LPPNPR
        M NS+RCC++C+LPCGALD+IRIVH NGYVEEI+ SI A ++++A+P HVL +P          S   + KI+++ PE++L+RG IYFL+P   LP   R
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSSSPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMP---LPPNPR

Query:  SRTSTARRNKVKNNNPDNNINNNSQRNGAVPDNAISMTNLLLSDQYLTEILSEKAS--THRERRR----GRVGVWRPHLESICE
         R  T RR K        N+ N S  + A  +       + L ++YL E++S  ++   HR RRR      V  WRP L+SI E
Subjt:  SRTSTARRNKVKNNNPDNNINNNSQRNGAVPDNAISMTNLLLSDQYLTEILSEKAS--THRERRR----GRVGVWRPHLESICE

AT1G29195.1 unknown protein5.8e-4753.19Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSSSPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPNPR---
        MK +IRCCI+CILPCGALDVIRIVHSNG+VEEISG+I A ++MKAHPKHVLK+PSS  +  D     +  KIV+VPPEA+LQRGKIYFLMP   + +   
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSSSPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPNPR---

Query:  ----------SRTSTARRNKVKNNNPDNNINNNSQRNGAVPDNAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICE
                  +     +R++ +  + D +   N   +  V D       L+ SD+YLTEILSEK +T ++RR+GRVGVWRPHLESI E
Subjt:  ----------SRTSTARRNKVKNNNPDNNINNNSQRNGAVPDNAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICE

AT2G30230.1 unknown protein1.1e-2637.16Show/hide
Query:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSSSPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMP---LPPNPR
        M NS+RCC++C+LPCGALD+IRIVH NG+V+EI+  + A ++++A+P HVL +P          S   + KI+++ PE++L+RG IYFL+P   +P   +
Subjt:  MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSSSPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMP---LPPNPR

Query:  SRTSTARRNKVKNNNPDNNINNNS-QRNGAVPDNAISMTNLLLSDQYLTEILSEKASTHRERRR----GRVGVWRPHLESICE
        ++     R + K     N+IN++    N  +  + +++    L D  L+E +S     +R RR+      V  WRPHL+SI E
Subjt:  SRTSTARRNKVKNNNPDNNINNNS-QRNGAVPDNAISMTNLLLSDQYLTEILSEKASTHRERRR----GRVGVWRPHLESICE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAACAGCATAAGATGCTGCATATCTTGCATTCTACCATGTGGAGCTCTGGATGTGATTCGCATAGTCCACTCCAATGGCTACGTGGAAGAAATCAGTGGCTCCAT
CAAGGCCTGCGACGTCATGAAAGCCCACCCCAAACACGTCCTCAAGAGGCCCAGCTCCTCCCCCGCCGCCGCCGACCACGACTCCTCCGCCGCTCTCCCCAAGATCGTCG
TCGTCCCACCGGAGGCCCAGCTCCAGCGTGGTAAGATTTACTTCCTCATGCCCCTCCCTCCCAACCCCCGCTCCCGAACCTCCACCGCCCGAAGGAATAAGGTCAAGAAT
AATAATCCAGATAATAATATTAATAATAACTCCCAACGAAACGGCGCCGTACCCGACAACGCCATTTCCATGACCAACCTCCTCCTCTCCGACCAGTACCTCACCGAAAT
ACTCTCCGAGAAGGCCTCCACGCACCGCGAACGGCGCCGCGGCCGCGTCGGTGTCTGGAGGCCCCACCTGGAGAGCATTTGCGAGTCTCCCACTGCCACT
mRNA sequenceShow/hide mRNA sequence
ATGAAAAACAGCATAAGATGCTGCATATCTTGCATTCTACCATGTGGAGCTCTGGATGTGATTCGCATAGTCCACTCCAATGGCTACGTGGAAGAAATCAGTGGCTCCAT
CAAGGCCTGCGACGTCATGAAAGCCCACCCCAAACACGTCCTCAAGAGGCCCAGCTCCTCCCCCGCCGCCGCCGACCACGACTCCTCCGCCGCTCTCCCCAAGATCGTCG
TCGTCCCACCGGAGGCCCAGCTCCAGCGTGGTAAGATTTACTTCCTCATGCCCCTCCCTCCCAACCCCCGCTCCCGAACCTCCACCGCCCGAAGGAATAAGGTCAAGAAT
AATAATCCAGATAATAATATTAATAATAACTCCCAACGAAACGGCGCCGTACCCGACAACGCCATTTCCATGACCAACCTCCTCCTCTCCGACCAGTACCTCACCGAAAT
ACTCTCCGAGAAGGCCTCCACGCACCGCGAACGGCGCCGCGGCCGCGTCGGTGTCTGGAGGCCCCACCTGGAGAGCATTTGCGAGTCTCCCACTGCCACT
Protein sequenceShow/hide protein sequence
MKNSIRCCISCILPCGALDVIRIVHSNGYVEEISGSIKACDVMKAHPKHVLKRPSSSPAAADHDSSAALPKIVVVPPEAQLQRGKIYFLMPLPPNPRSRTSTARRNKVKN
NNPDNNINNNSQRNGAVPDNAISMTNLLLSDQYLTEILSEKASTHRERRRGRVGVWRPHLESICESPTAT