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MS013608 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013608
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein LOL2
Genome locationscaffold402:2803000..2805049
RNA-Seq ExpressionMS013608
SyntenyMS013608
Gene Ontology termsGO:0009617 - response to bacterium (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type
IPR040319 - LSD1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146601.1 protein LOL2 isoform X2 [Cucumis sativus]1.2e-5987.02Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        M+  EI+ DEDDGPPPGWEPITP LP PPPP LSSDMAQMVCG+CRRLLKYLKGARYV+CSCCSTVN+VLEA EVGQVKCGSCA+LLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CT+VTEIGVHNRRPPWSV QGQA PPTN VQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

XP_011653178.1 protein LOL2 isoform X1 [Cucumis sativus]2.9e-5886.36Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSS-DMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCS
        M+  EI+ DEDDGPPPGWEPITP LP PPPP LSS DMAQMVCG+CRRLLKYLKGARYV+CSCCSTVN+VLEA EVGQVKCGSCA+LLMYPYGASSVRCS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSS-DMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCS

Query:  SCTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        SCT+VTEIGVHNRRPPWSV QGQA PPTN VQ
Subjt:  SCTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

XP_022140183.1 protein LOL2 [Momordica charantia]2.8e-6999.24Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        MEFQEIDNDEDDGPPPGWEPITPP PPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

XP_022927005.1 protein LOL2 [Cucurbita moschata]9.7e-6290.08Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        ME  EI+ DEDDGPPPGWEPITPPLP PPP PLSSDMAQMVCG+CRRLLKYLKGARYV+CSCCSTVNYVLEA EVGQVKCGSCA+LLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CT VTEIGVHNRRPPWSVQQGQA PPTN VQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

XP_023001758.1 protein LOL2 [Cucurbita maxima]8.2e-6189.31Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        ME  EI+ DEDDGPPPGWEPITPPLP  PP PLSSDMAQMVCG+CRRLLKYLKGARYV+CSCCSTVNYVLEA EVGQVKCGSCA+LLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CT VTEIGVHNRRPPWSVQQGQA PPTN VQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

TrEMBL top hitse value%identityAlignment
A0A0A0LXE3 Uncharacterized protein5.7e-6087.02Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        M+  EI+ DEDDGPPPGWEPITP LP PPPP LSSDMAQMVCG+CRRLLKYLKGARYV+CSCCSTVN+VLEA EVGQVKCGSCA+LLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CT+VTEIGVHNRRPPWSV QGQA PPTN VQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

A0A5A7UQS3 Protein LOL2 isoform X49.1e-5885.5Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        M+  EI+ DEDDGPPPGWEPITP LP PP P LS DMAQMVCG+CRRLLKYLKGARYV+CS CSTVN+VLEA EVGQVKCGSCA+LLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CT+VTEIGVHNRRPPWSVQQGQA PPTN VQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

A0A6J1CHF4 protein LOL21.4e-6999.24Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        MEFQEIDNDEDDGPPPGWEPITPP PPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

A0A6J1EMN3 protein LOL24.7e-6290.08Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        ME  EI+ DEDDGPPPGWEPITPPLP PPP PLSSDMAQMVCG+CRRLLKYLKGARYV+CSCCSTVNYVLEA EVGQVKCGSCA+LLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CT VTEIGVHNRRPPWSVQQGQA PPTN VQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

A0A6J1KRG9 protein LOL24.0e-6189.31Show/hide
Query:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS
        ME  EI+ DEDDGPPPGWEPITPPLP  PP PLSSDMAQMVCG+CRRLLKYLKGARYV+CSCCSTVNYVLEA EVGQVKCGSCA+LLMYPYGASSVRCSS
Subjt:  MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSS

Query:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ
        CT VTEIGVHNRRPPWSVQQGQA PPTN VQ
Subjt:  CTNVTEIGVHNRRPPWSVQQGQATPPTNVVQ

SwissProt top hitse value%identityAlignment
O65426 Protein LOL28.9e-3456.69Show/hide
Query:  QEIDNDEDDGPPPGWEPITPPLP---------PPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGAS
        +E + +E++GPPPGWE    P P         P P      + AQMVCGSCRRLL YL+G+++V+CS C TVN VLEA +VGQV C +C LLLMYPYGA 
Subjt:  QEIDNDEDDGPPPGWEPITPPLP---------PPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGAS

Query:  SVRCSSCTNVTEIGVHNRRPPWSVQQG
        +VRCSSC +VT+I  +N+RPPWS QQG
Subjt:  SVRCSSCTNVTEIGVHNRRPPWSVQQG

P94077 Protein LSD11.9e-2046.43Show/hide
Query:  PPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYV---------LEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVHNRRPPWS
        PPPPPP   DMA ++CG CR +L Y +GA  VRCSCC T N V           + +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P  
Subjt:  PPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYV---------LEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVHNRRPPWS

Query:  VQQ--GQATPPT
          +  G A PP+
Subjt:  VQQ--GQATPPT

Q0J7V9 Protein LSD17.3e-2053.85Show/hide
Query:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG
        P   ++MAQ+VCG C  LL Y++GA  V+CSCC TVN  +EA +V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG

Q704V3 Protein LOL57.3e-2853.45Show/hide
Query:  PGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVHNRRPP
        P  +   P +PPPP P L+ ++ QMVCGSCR LL Y +GA YV C+CC T+NYVLEA EVG+V CG CA LLMYP+GA +V+CS C  VTEIG  N R  
Subjt:  PGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVHNRRPP

Query:  WSVQQGQATPPTNVVQ
         S++Q   T  + + +
Subjt:  WSVQQGQATPPTNVVQ

Q93ZB1 Protein LOL15.0e-2156.41Show/hide
Query:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  V+CSCC TVN  LEA +V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG

Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 13.6e-2256.41Show/hide
Query:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  V+CSCC TVN  LEA +V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG

AT1G32540.2 lsd one like 13.6e-2256.41Show/hide
Query:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  V+CSCC TVN  LEA +V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG

AT1G32540.3 lsd one like 13.6e-2256.41Show/hide
Query:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG
        PP  ++MAQ+VCG C  LL Y++GA  V+CSCC TVN  LEA +V  V CG+C +LLMY YGA SV+C+ C  VT +G
Subjt:  PPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIG

AT4G20380.2 LSD1 zinc finger family protein1.4e-2146.43Show/hide
Query:  PPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYV---------LEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVHNRRPPWS
        PPPPPP   DMA ++CG CR +L Y +GA  VRCSCC T N V           + +V Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P  
Subjt:  PPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYV---------LEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVHNRRPPWS

Query:  VQQ--GQATPPT
          +  G A PP+
Subjt:  VQQ--GQATPPT

AT4G21610.1 lsd one like 26.3e-3556.69Show/hide
Query:  QEIDNDEDDGPPPGWEPITPPLP---------PPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGAS
        +E + +E++GPPPGWE    P P         P P      + AQMVCGSCRRLL YL+G+++V+CS C TVN VLEA +VGQV C +C LLLMYPYGA 
Subjt:  QEIDNDEDDGPPPGWEPITPPLP---------PPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGAS

Query:  SVRCSSCTNVTEIGVHNRRPPWSVQQG
        +VRCSSC +VT+I  +N+RPPWS QQG
Subjt:  SVRCSSCTNVTEIGVHNRRPPWSVQQG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTCCAGGAAATCGACAATGACGAAGATGACGGACCTCCTCCCGGATGGGAACCTATCACTCCGCCGCTGCCGCCTCCACCACCGCCGCCACTTTCTTCTGATAT
GGCACAAATGGTCTGTGGTTCCTGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCGGTGCTCTTGCTGTTCAACAGTCAACTATGTGCTAGAAGCACAGG
AGGTTGGACAAGTTAAATGTGGTTCCTGTGCATTGTTGCTGATGTACCCATATGGAGCATCATCAGTTAGGTGTTCGTCGTGTACCAATGTGACAGAAATTGGGGTGCAT
AACAGACGCCCACCGTGGTCTGTCCAGCAGGGACAAGCAACCCCTCCTACCAACGTTGTCCAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATTCCAGGAAATCGACAATGACGAAGATGACGGACCTCCTCCCGGATGGGAACCTATCACTCCGCCGCTGCCGCCTCCACCACCGCCGCCACTTTCTTCTGATAT
GGCACAAATGGTCTGTGGTTCCTGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCGGTGCTCTTGCTGTTCAACAGTCAACTATGTGCTAGAAGCACAGG
AGGTTGGACAAGTTAAATGTGGTTCCTGTGCATTGTTGCTGATGTACCCATATGGAGCATCATCAGTTAGGTGTTCGTCGTGTACCAATGTGACAGAAATTGGGGTGCAT
AACAGACGCCCACCGTGGTCTGTCCAGCAGGGACAAGCAACCCCTCCTACCAACGTTGTCCAG
Protein sequenceShow/hide protein sequence
MEFQEIDNDEDDGPPPGWEPITPPLPPPPPPPLSSDMAQMVCGSCRRLLKYLKGARYVRCSCCSTVNYVLEAQEVGQVKCGSCALLLMYPYGASSVRCSSCTNVTEIGVH
NRRPPWSVQQGQATPPTNVVQ