CuGenDBv2

Gene ID	MS013648
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem I P700 chlorophyll a apoprotein A1
Genome location	scaffold1457:156746..157010
RNA-Seq Expression	MS013648
Synteny	MS013648
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009507 - chloroplast (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0042651 - thylakoid membrane (cellular component) GO:0016491 - oxidoreductase activity (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0051536 - iron-sulfur cluster binding (molecular function)
InterPro domains	IPR001280 - Photosystem I PsaA/PsaB IPR036408 - Photosystem I PsaA/PsaB superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CAD6238947.1 unnamed protein product [Miscanthus lutarioriparius]

2.3e-27

71.59

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Query:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS
        +V  GKV LLPIPLG T+FLVHH + FTIHV  LI LKG+LF+ SSRLIP KAN  FRFPCDGP RG TCQVS WDHVFL LFW+ +S
Subjt:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS

PLY98718.1 hypothetical protein LSAT_1X110681 [Lactuca sativa]

1.0e-27

70.45

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Query:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS
        +   GKV LLPIPLG  +FLVHH + FTIHV  LI LKG+LF+CSSRLIP KAN  FRFPCDGP RG TCQVS WDHVFL LFW+ +S
Subjt:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS

TYI43838.1 hypothetical protein ES332_A01G195700v1 [Gossypium tomentosum]

2.3e-27

69.32

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Query:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS
        +   GKV LLPIPLG  +FLVHH + FTIH+  LI LKG+LF+ SS LIP KAN  FRFPCDGPRRG+TCQVS WDHVFLRLFW+ +S
Subjt:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS

XP_042753478.1 photosystem I P700 chlorophyll a apoprotein A1-like, partial [Lactuca sativa]

1.0e-27

70.45

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Query:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS
        +   GKV LLPIPLG  +FLVHH + FTIHV  LI LKG+LF+CSSRLIP KAN  FRFPCDGP RG TCQVS WDHVFL LFW+ +S
Subjt:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS

YP_008993606.1 photosystem I P700 apoprotein A1 [Magnolia odora]

2.3e-27

69.32

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Query:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS
        +   GKV LLPIPLG  +FLVHH + FTIHV  LI LKG+LF+CSSRLIP KAN  FRFPCDGP RG TCQVS WDHVFL LFW+ ++
Subjt:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS

TrEMBL top hits

e value

%identity

Alignment

A0A0K1Z996 Photosystem I P700 chlorophyll a apoprotein A1

4.2e-27

70.45

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Query:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS
        +  SGKV LLPIPLG  +FLVHH + FTIHV  LI LKG+LF+ SSRLIP KAN  FRFPCDGP RG TCQVS WDHVFL LFW+ +S
Subjt:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS

A0A0U1SL28 Photosystem I P700 chlorophyll a apoprotein A1

1.1e-27

69.32

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Query:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS
        +   GKV LLPIPLG  +FLVHH + FTIHV  LI LKG+LF+CSSRLIP KAN  FRFPCDGP RG TCQVS WDHVFL LFW+ ++
Subjt:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS

A0A287TXV6 Photosystem I P700 chlorophyll a apoprotein A1

3.2e-27

72.94

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Query:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWI
        +V  GKV LLPIPLG  +FLVHH + FTIHV  LIFLKG+LF+ SSRLIP KAN  FRFPCDGP RG TCQVS WDHVFL LFW+
Subjt:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWI

A0A2J6MGI4 Photosystem I P700 chlorophyll a apoprotein A1

5.0e-28

70.45

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Query:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS
        +   GKV LLPIPLG  +FLVHH + FTIHV  LI LKG+LF+CSSRLIP KAN  FRFPCDGP RG TCQVS WDHVFL LFW+ +S
Subjt:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS

A0A5D2RUY8 Uncharacterized protein

1.1e-27

69.32

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Query:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS
        +   GKV LLPIPLG  +FLVHH + FTIH+  LI LKG+LF+ SS LIP KAN  FRFPCDGPRRG+TCQVS WDHVFLRLFW+ +S
Subjt:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS

SwissProt top hits

e value

%identity

Alignment

Q2QD89 Photosystem I P700 chlorophyll a apoprotein A1

1.5e-29

70.45

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Query:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS
        +   GKV LLPIPLG  +FLVHH + FTIHV  LI LKG+LFS SSRLIP KAN  FRFPCDGP RG TCQVS WDHVFL LFW+ +S
Subjt:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS

Q3V534 Photosystem I P700 chlorophyll a apoprotein A1

3.3e-29

69.32

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Query:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS
        +   GKV LLPIPLG  +FLVHH + FTIHV  LI LKG+LF+ SSRLIP KAN  FRFPCDGP RG TCQVS WDHVFL LFW+ +S
Subjt:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS

Q8M9W0 Photosystem I P700 chlorophyll a apoprotein A1

3.3e-29

69.32

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Query:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS
        +   GKV LLPIPLG  +FLVHH + FTIHV  LI LKG+LF+ SSRLIP KAN  FRFPCDGP RG TCQVS WDHVFL LFW+ +S
Subjt:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS

Q9MUJ2 Photosystem I P700 chlorophyll a apoprotein A1

2.6e-29

70.45

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Query:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS
        I   GKV LLPIPLG  +FLVHH + FTIHV  LI LKG+LF+ SSRLIP KAN  FRFPCDGP RG TCQVS WDHVFL LFW+ +S
Subjt:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS

Q9MUJ5 Photosystem I P700 chlorophyll a apoprotein A1

2.6e-29

70.45

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Query:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS
        I   GKV LLPIPLG  +FLVHH + FTIHV  LI LKG+LF+ SSRLIP KAN  FRFPCDGP RG TCQVS WDHVFL LFW+ +S
Subjt:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00340.1 Photosystem I, PsaA/PsaB protein

6.3e-15

42.86

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Query:  IPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS
        + +G  +FLVHH     +H   LI +KG L +  S+L+P K +F + FPCDGP RG TC +S WD  +L +FW++++
Subjt:  IPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS

ATCG00350.1 Photosystem I, PsaA/PsaB protein

5.3e-30

68.18

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Query:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS
        +   GKV LLPIPLG  +FLVHH + FTIHV  LI LKG+LF+ SSRLIP KAN  FRFPCDGP RG TCQVS WDHVFL LFW+ ++
Subjt:  IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANF-FRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS

Sequences

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CDS sequence

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ATTGTTACGAGCGGTAAAGTTGATTTGTTACCTATTCCATTAGGAATCACAAATTTTTTGGTACATCATACTTATTTATTTACGATTCATGTGATGGCATTGATATTCCT
GAAAGGTATTCTATTTTCTTGTAGCTCACGTTTGATACCGGGTAAAGCAAATTTTTTTCGTTTTCCTTGTGATGGACCCAGAAGAGGGGATACATGTCAAGTATCCACTT
GGGATCATGTCTTCTTAAGACTATTTTGGATCATGTCTTCT

mRNA sequence

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Protein sequence

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IVTSGKVDLLPIPLGITNFLVHHTYLFTIHVMALIFLKGILFSCSSRLIPGKANFFRFPCDGPRRGDTCQVSTWDHVFLRLFWIMSS

MS013648 (gene) of Bitter gourd (TR) v1 genome