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MS013670 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013670
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold263:31346..31579
RNA-Seq ExpressionMS013670
SyntenyMS013670
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019177676.1 PREDICTED: uncharacterized protein LOC109172888 [Ipomoea nil]2.8e-1655.13Show/hide
Query:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF
        I N  K LL+++IS +QSAF+ GR + DN ++ +E  H +R K+ G+VGWAALKLDM+KAY+R+EWSF+E+M+L +GF
Subjt:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF

XP_030479107.1 uncharacterized protein LOC115696342 [Cannabis sativa]7.4e-1752.56Show/hide
Query:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF
        + N  K +L S+IS+NQSAF+ GR ++DN ++ NE +H+I +++SGK+GWAA+KLDM KA++RVEW FI  M+  +GF
Subjt:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF

XP_030502565.1 uncharacterized protein LOC115717725 [Cannabis sativa]2.8e-1654.55Show/hide
Query:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMG
        + N  K +L+SVIS NQSAF++GR + DN ++ NE +H+I ++KSGK+GWAA+KLDM KA++RVEWSFI   +  +G
Subjt:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMG

XP_040249920.1 uncharacterized protein LOC109742703 isoform X1 [Aegilops tauschii subsp. strangulata]2.8e-1655.13Show/hide
Query:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF
        + N  K +L  +IS NQSAFV GR + DN +L  EC H ++NK++GK G+AA+KLDMSKAY++VEW F+E+MM ++GF
Subjt:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF

XP_040249922.1 uncharacterized protein LOC109742703 isoform X3 [Aegilops tauschii subsp. strangulata]2.8e-1655.13Show/hide
Query:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF
        + N  K +L  +IS NQSAFV GR + DN +L  EC H ++NK++GK G+AA+KLDMSKAY++VEW F+E+MM ++GF
Subjt:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF

TrEMBL top hitse value%identityAlignment
A0A803PSF4 Uncharacterized protein1.4e-1654.55Show/hide
Query:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMG
        + N  K +L+SVIS NQSAF++GR + DN ++ NE +H+I ++KSGK+GWAA+KLDM KA++RVEWSFI   +  +G
Subjt:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMG

A0A803PV21 Uncharacterized protein6.1e-1757.69Show/hide
Query:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF
        + N  KG+L SVIS NQSAF+ GR + DN ++  E +H ++ K+ GK G+ ALKLD+SKAY+RVEW+F+EQMML MGF
Subjt:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF

A0A803PY78 Uncharacterized protein5.5e-1856.41Show/hide
Query:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF
        + N  K +L+ ++S NQSAF+SGR + DN +L NE VH+I N+K+GKVGWAALKLDMSKA++RVEW F++ +M    F
Subjt:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF

A0A803PYN6 Uncharacterized protein4.2e-1857.69Show/hide
Query:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF
        + N  K +L+ +IS NQSAF+SGR + DN +L NE VH+I N+K+GKVGWAALKLDMSKA++RVEW F++ +M    F
Subjt:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF

A0A803QL94 Uncharacterized protein2.7e-1756.41Show/hide
Query:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF
        + N  K +L+ +IS +QSAF+SGR + DN +L NE VH+I N+K GKVGWAALKLDMSKA++RVEW F++ +M    F
Subjt:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases2.6e-1241.03Show/hide
Query:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF
        +V   K L+ ++I   Q++F+ GR   DN +   E VHS+R KK G  GW  LKLD+ KAY+R+ W ++E  ++  GF
Subjt:  IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTGTGAATGGCACGAAGGGGCTATTGAATTCGGTTATATCTAGAAACCAAAGTGCATTCGTGTCGGGCAGGTGTGTGGTTGACAACGAGATTCTTAGGAACGAATGTGT
GCACTCCATTCGAAATAAAAAATCTGGCAAGGTGGGTTGGGCAGCTTTGAAATTGGACATGAGCAAGGCCTACAATAGGGTTGAGTGGAGTTTTATTGAGCAAATGATGT
TGCGGATGGGTTTT
mRNA sequenceShow/hide mRNA sequence
ATTGTGAATGGCACGAAGGGGCTATTGAATTCGGTTATATCTAGAAACCAAAGTGCATTCGTGTCGGGCAGGTGTGTGGTTGACAACGAGATTCTTAGGAACGAATGTGT
GCACTCCATTCGAAATAAAAAATCTGGCAAGGTGGGTTGGGCAGCTTTGAAATTGGACATGAGCAAGGCCTACAATAGGGTTGAGTGGAGTTTTATTGAGCAAATGATGT
TGCGGATGGGTTTT
Protein sequenceShow/hide protein sequence
IVNGTKGLLNSVISRNQSAFVSGRCVVDNEILRNECVHSIRNKKSGKVGWAALKLDMSKAYNRVEWSFIEQMMLRMGF