; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013677 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013677
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic
Genome locationscaffold263:127824..128363
RNA-Seq ExpressionMS013677
SyntenyMS013677
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR003425 - CCB3/YggT


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067975.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 [Cucumis melo var. makuwa]2.8e-7585.56Show/hide
Query:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF
        QRGFK+HPQRNPNY+FQA++CSSSLLGS  TSSK+   LA   PPLKPAAA+EA RTIPFALQDASMAASDF  +M LADLDP TAKLAI FLGP LS F
Subjt:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF

Query:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        SFLFI RIVMSWYPKLPVGKFPYV+AYAPTEPLLI TRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

XP_008451549.1 PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic [Cucumis melo]8.0e-7585Show/hide
Query:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF
        +RGFK+HPQRNPNY+FQA++CSSSLLGS  TSSK+   LA   PPLKPAAA+EA RTIPFALQDASMAASDF  +M LADLDP TAKLAI FLGP LS F
Subjt:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF

Query:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        SFLFI RIVMSWYPKLPVGKFPYV+AYAPTEPLLI TRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

XP_022144899.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 [Momordica charantia]8.3e-8898.31Show/hide
Query:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF
        +RGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFE TRT PFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF
Subjt:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF

Query:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ
        SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ
Subjt:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ

XP_022144908.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 [Momordica charantia]8.3e-8898.31Show/hide
Query:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF
        +RGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFE TRT PFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF
Subjt:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF

Query:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ
        SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ
Subjt:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ

XP_022144916.1 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X3 [Momordica charantia]7.5e-8998.33Show/hide
Query:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF
        +RGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFE TRT PFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF
Subjt:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF

Query:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

TrEMBL top hitse value%identityAlignment
A0A5A7VQJ0 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB31.3e-7585.56Show/hide
Query:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF
        QRGFK+HPQRNPNY+FQA++CSSSLLGS  TSSK+   LA   PPLKPAAA+EA RTIPFALQDASMAASDF  +M LADLDP TAKLAI FLGP LS F
Subjt:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF

Query:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        SFLFI RIVMSWYPKLPVGKFPYV+AYAPTEPLLI TRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

A0A5D3D3A7 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB33.9e-7585Show/hide
Query:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF
        QRGFK+HPQRNPNY+FQA++CSSSLLGS  TSSK+   LA   PPLKPAAA+EA RTIPFAL+DASMAASDF  +M LADLDP TAKLAI FLGP LS F
Subjt:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF

Query:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        SFLFI RIVMSWYPKLPVGKFPYV+AYAPTEPLLI TRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

A0A6J1CTL8 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X14.0e-8898.31Show/hide
Query:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF
        +RGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFE TRT PFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF
Subjt:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF

Query:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ
        SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ
Subjt:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ

A0A6J1CUI3 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X24.0e-8898.31Show/hide
Query:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF
        +RGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFE TRT PFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF
Subjt:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF

Query:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ
        SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ
Subjt:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQ

A0A6J1CUU2 protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X33.6e-8998.33Show/hide
Query:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF
        +RGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFE TRT PFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF
Subjt:  QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAF

Query:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
        SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS
Subjt:  SFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS

SwissProt top hitse value%identityAlignment
Q8RWM7 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic9.9e-4474.6Show/hide
Query:  EATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAFSFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPV
        EA  T     Q  S+  S+  +N++LADLDP TAKLAIG LGP LSAF FLFI+RIVMSWYPKLPV KFPYV+AYAPTEP+L+ TRKVIPPL GVDVTPV
Subjt:  EATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAFSFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPV

Query:  VWFGLVSFLNEILLGPQGLLVLLSQQ
        VWFGLVSFL+EIL+GPQGLLVL+SQQ
Subjt:  VWFGLVSFLNEILLGPQGLLVLLSQQ

Arabidopsis top hitse value%identityAlignment
AT3G07430.1 YGGT family protein7.9e-0425.48Show/hide
Query:  SSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIP-------FALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAFSFLFIVRIVMSWYP
        SS+L GST + + +A L  + T  L    +     + P       F+L  A        ++     L+     +A+G +  +L  +S + +VR+++SW+P
Subjt:  SSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIP-------FALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAFSFLFIVRIVMSWYP

Query:  KLPVGKFPYVVAYAPTEPLLIVTRKVIPPL-GGVDVTPVVWFGLVSFLNEILLGPQG
         +P  + P        +P L + R +IPP+   +DV+P++ F ++  L  I+ G  G
Subjt:  KLPVGKFPYVVAYAPTEPLLIVTRKVIPPL-GGVDVTPVVWFGLVSFLNEILLGPQG

AT4G27990.1 YGGT family protein2.1e-0430.38Show/hide
Query:  LGPFLSAFSFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPL-GGVDVTPVVWFGLVSFLNEILLGPQG
        L  +L  +S + +VR+++SW+P +P  + P        +P L + R +IPP+   +DV+P++ F ++  L  IL   +G
Subjt:  LGPFLSAFSFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPL-GGVDVTPVVWFGLVSFLNEILLGPQG

AT5G21920.1 YGGT family protein2.1e-0437.1Show/hide
Query:  FLSAFSFLFIVRIVMSWYPKLPVGKFPYVVAYAPT--EPLLIVTRKVIPPLGGVDVTPVVWF
        FL+ ++ + +VR+V++W+P  P    P +V    T  +P L + R  IPPLGG+D++P++ F
Subjt:  FLSAFSFLFIVRIVMSWYPKLPVGKFPYVVAYAPT--EPLLIVTRKVIPPLGGVDVTPVVWF

AT5G21920.2 YGGT family protein4.6e-0429.85Show/hide
Query:  SLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAFSFLFIVRIVMSWYPKLPVGKFPY
        SL+ +T         LAS  P  + A     T  + FA+ +   AA        L     A   +A G +  FL+ ++ + +VR+V++W+P  P    P 
Subjt:  SLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAFSFLFIVRIVMSWYPKLPVGKFPY

Query:  VVAYAPT--EPLLIVTRKVIPPLGGVDVTPVVWF
        +V    T  +P L + R  IPPLGG+D++P++ F
Subjt:  VVAYAPT--EPLLIVTRKVIPPLGGVDVTPVVWF

AT5G36120.1 cofactor assembly, complex C (B6F)7.1e-4574.6Show/hide
Query:  EATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAFSFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPV
        EA  T     Q  S+  S+  +N++LADLDP TAKLAIG LGP LSAF FLFI+RIVMSWYPKLPV KFPYV+AYAPTEP+L+ TRKVIPPL GVDVTPV
Subjt:  EATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAFSFLFIVRIVMSWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPV

Query:  VWFGLVSFLNEILLGPQGLLVLLSQQ
        VWFGLVSFL+EIL+GPQGLLVL+SQQ
Subjt:  VWFGLVSFLNEILLGPQGLLVLLSQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGAGAGGCTTTAAGCACCATCCTCAAAGAAATCCAAACTACAGATTCCAGGCGCTCCAATGTAGCTCATCCTTATTGGGTTCTACTGTTACCTCTTCCAAGGTTGCTCT
GTTATTAGCCTCTGCCACCCCTCCATTAAAGCCAGCTGCTGCATTTGAAGCTACAAGAACTATCCCCTTTGCCCTGCAAGATGCATCAATGGCTGCCTCTGATTTCACGA
AAAACATGGCCCTGGCCGACCTCGACCCAGCAACAGCAAAGCTCGCAATCGGCTTTCTGGGTCCGTTTCTCTCGGCATTTTCGTTTTTGTTTATTGTGAGAATAGTGATG
TCTTGGTATCCAAAGTTACCTGTGGGGAAGTTTCCATATGTTGTAGCTTATGCCCCAACTGAACCACTTCTAATTGTGACAAGGAAGGTGATTCCCCCTCTCGGCGGAGT
TGACGTAACGCCTGTTGTCTGGTTCGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGTCCCCAAGGACTGCTTGTTCTTCTTTCTCAACAGGTCAGC
mRNA sequenceShow/hide mRNA sequence
CAGAGAGGCTTTAAGCACCATCCTCAAAGAAATCCAAACTACAGATTCCAGGCGCTCCAATGTAGCTCATCCTTATTGGGTTCTACTGTTACCTCTTCCAAGGTTGCTCT
GTTATTAGCCTCTGCCACCCCTCCATTAAAGCCAGCTGCTGCATTTGAAGCTACAAGAACTATCCCCTTTGCCCTGCAAGATGCATCAATGGCTGCCTCTGATTTCACGA
AAAACATGGCCCTGGCCGACCTCGACCCAGCAACAGCAAAGCTCGCAATCGGCTTTCTGGGTCCGTTTCTCTCGGCATTTTCGTTTTTGTTTATTGTGAGAATAGTGATG
TCTTGGTATCCAAAGTTACCTGTGGGGAAGTTTCCATATGTTGTAGCTTATGCCCCAACTGAACCACTTCTAATTGTGACAAGGAAGGTGATTCCCCCTCTCGGCGGAGT
TGACGTAACGCCTGTTGTCTGGTTCGGATTGGTTAGTTTCCTCAACGAGATATTGCTCGGTCCCCAAGGACTGCTTGTTCTTCTTTCTCAACAGGTCAGC
Protein sequenceShow/hide protein sequence
QRGFKHHPQRNPNYRFQALQCSSSLLGSTVTSSKVALLLASATPPLKPAAAFEATRTIPFALQDASMAASDFTKNMALADLDPATAKLAIGFLGPFLSAFSFLFIVRIVM
SWYPKLPVGKFPYVVAYAPTEPLLIVTRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS