CuGenDBv2

Gene ID	MS013678
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic
Genome location	scaffold263:129898..131325
RNA-Seq Expression	MS013678
Synteny	MS013678
Gene Ontology terms	GO:0009507 - chloroplast (cellular component)
InterPro domains	IPR003772 - Large ribosomal RNA subunit accumulation protein YceD

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0067976.1 uncharacterized protein E6C27_scaffold138G001640 [Cucumis melo var. makuwa]

1.3e-141

80.06

Show/hide

Query:  FKMSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM
        FKM ATFPTSS+VSSSHS EFI +   KSKGN SFNS+FR     VP  F  NIQ ++      +K  S+K VKP YQSLFEDN II+DW DQEGD EEM
Subjt:  FKMSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM

Query:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV
        GSPWEGAV YKRNSSVSHVEYCTTLERLG EKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQIS+DVTRK+KKLRLDGIVKTVITL+CYRCCEPA EC+
Subjt:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV

Query:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSC
        FSNFS++LSEEPIEEP+VINMGIISGQD F T + NSDEDDEE +DLDDQLYFPPV+KEIDISKNIRDILHLEIT+N ICNPGCKGMCL CGINLN GSC
Subjt:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

XP_008451550.1 PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo]

1.9e-140

79.45

Show/hide

Query:  FKMSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM
        FKM ATFPTSS+VSSSHS EFI +   +SKGN SFNS+FR     VP  F  NIQ ++      +K  S+K VKP YQSLFEDN II+DW DQEGD EEM
Subjt:  FKMSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM

Query:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV
         SPWEGAV YKRNSSVSHVEYCTTLERLG EKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQIS+DVTRK+KKLRLDGIVKTVITL+CYRCCEPA EC+
Subjt:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV

Query:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSC
        FSNFS++LSEEPIEEP+VINMGIISGQD F T + NSDEDDEE +DLDDQLYFPPV+KEIDISKNIRDILHLEIT+N ICNPGCKGMCL CGINLN GSC
Subjt:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

XP_008451552.1 PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo]

1.9e-140

79.45

Show/hide

Query:  FKMSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM
        FKM ATFPTSS+VSSSHS EFI +   +SKGN SFNS+FR     VP  F  NIQ ++      +K  S+K VKP YQSLFEDN II+DW DQEGD EEM
Subjt:  FKMSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM

Query:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV
         SPWEGAV YKRNSSVSHVEYCTTLERLG EKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQIS+DVTRK+KKLRLDGIVKTVITL+CYRCCEPA EC+
Subjt:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV

Query:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSC
        FSNFS++LSEEPIEEP+VINMGIISGQD F T + NSDEDDEE +DLDDQLYFPPV+KEIDISKNIRDILHLEIT+N ICNPGCKGMCL CGINLN GSC
Subjt:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

XP_022155011.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic [Momordica charantia]

1.4e-175

98.42

Show/hide

Query:  MSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVPFTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTY
        MSATFPTS IVSSSHSNEFIRLC LKSKGNASFNSNFRFVGCKVPFTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTY
Subjt:  MSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVPFTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTY

Query:  KRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSE
        KRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSE
Subjt:  KRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSE

Query:  EPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKN
        EPIEEPEVINMGIISGQDKFMTFD+NSD+DDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEIT+NAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKN
Subjt:  EPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKN

Query:  DFGPLGNLKRQMQKNS
        DFGPLGNLKRQMQKNS
Subjt:  DFGPLGNLKRQMQKNS

XP_038897008.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic-like [Benincasa hispida]

1.3e-141

81.17

Show/hide

Query:  MSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVP--FTENIQAT------MLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGS
        MSATFPTSS+VSSSHSNEFI++  LKSKGN SF+S+     C+VP  F  NIQ +      MLK  S+K VKP YQSLFEDN II+DWED +GD EEMGS
Subjt:  MSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVP--FTENIQAT------MLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGS

Query:  PWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFS
        PWEGAV YKRNSSVSHVEYCTTLERLG EKLSTDVSKSRAS MGLRV K VKDYPFGTPVQIS+DVTRKEKKLRLDGIVKTVITL+CYRCCE A EC+FS
Subjt:  PWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFS

Query:  NFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSCNC
        NFS+ILSEEPIEEP+VINMGIISGQD F T+D NSDEDDEEL+DLDDQLYFP +EKEIDISKNIRDILHLEIT+NAIC+PGCKGMCL CGINLN GSCNC
Subjt:  NFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSCNC

Query:  SKQDVKKNDFGPLGNLKRQMQKNS
        SKQ VKKNDFGPLGNLK+QMQKNS
Subjt:  SKQDVKKNDFGPLGNLKRQMQKNS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BR50 uncharacterized protein LOC103492797 isoform X2

9.4e-141

79.45

Show/hide

Query:  FKMSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM
        FKM ATFPTSS+VSSSHS EFI +   +SKGN SFNS+FR     VP  F  NIQ ++      +K  S+K VKP YQSLFEDN II+DW DQEGD EEM
Subjt:  FKMSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM

Query:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV
         SPWEGAV YKRNSSVSHVEYCTTLERLG EKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQIS+DVTRK+KKLRLDGIVKTVITL+CYRCCEPA EC+
Subjt:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV

Query:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSC
        FSNFS++LSEEPIEEP+VINMGIISGQD F T + NSDEDDEE +DLDDQLYFPPV+KEIDISKNIRDILHLEIT+N ICNPGCKGMCL CGINLN GSC
Subjt:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

A0A1S3BSU8 uncharacterized protein LOC103492797 isoform X1

9.4e-141

79.45

Show/hide

Query:  FKMSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM
        FKM ATFPTSS+VSSSHS EFI +   +SKGN SFNS+FR     VP  F  NIQ ++      +K  S+K VKP YQSLFEDN II+DW DQEGD EEM
Subjt:  FKMSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM

Query:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV
         SPWEGAV YKRNSSVSHVEYCTTLERLG EKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQIS+DVTRK+KKLRLDGIVKTVITL+CYRCCEPA EC+
Subjt:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV

Query:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSC
        FSNFS++LSEEPIEEP+VINMGIISGQD F T + NSDEDDEE +DLDDQLYFPPV+KEIDISKNIRDILHLEIT+N ICNPGCKGMCL CGINLN GSC
Subjt:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

A0A5A7VN29 Uncharacterized protein

6.5e-142

80.06

Show/hide

Query:  FKMSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM
        FKM ATFPTSS+VSSSHS EFI +   KSKGN SFNS+FR     VP  F  NIQ ++      +K  S+K VKP YQSLFEDN II+DW DQEGD EEM
Subjt:  FKMSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVP--FTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEM

Query:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV
        GSPWEGAV YKRNSSVSHVEYCTTLERLG EKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQIS+DVTRK+KKLRLDGIVKTVITL+CYRCCEPA EC+
Subjt:  GSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECV

Query:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSC
        FSNFS++LSEEPIEEP+VINMGIISGQD F T + NSDEDDEE +DLDDQLYFPPV+KEIDISKNIRDILHLEIT+N ICNPGCKGMCL CGINLN GSC
Subjt:  FSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSC

Query:  NCSKQDVKKNDFGPLGNLKRQMQKNS
        NCSKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  NCSKQDVKKNDFGPLGNLKRQMQKNS

A0A5D3D2J4 Uncharacterized protein

2.1e-140

79.63

Show/hide

Query:  FKMSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVPFTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGS
        FKM ATFPTSS+VSSSHS EFI +   KSKGN SFNS  R       F  NIQ ++      +K  S+K VKP YQSLFEDN II+DW DQEGD EEMGS
Subjt:  FKMSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVPFTENIQATM------LKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGS

Query:  PWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFS
        PWEGAV YKRNSSVSHVEYCTTLERLG EKLSTDVSKSRAS MGLRVTK VKDYPFGTPVQIS+DVTRK+KKLRLDGIVKTVITL+CYRCCEPA EC+FS
Subjt:  PWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFS

Query:  NFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSCNC
        NFS++LSEEPIEEP+VINMGIISGQD F T + NSDEDDEE +DLDDQLYFPPV+KEIDISKNIRDILHLEIT+N ICNPGCKGMCL CGINLN GSCNC
Subjt:  NFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSCNC

Query:  SKQDVKKNDFGPLGNLKRQMQKNS
        SKQ VKKNDFGPLGNLKR+MQ NS
Subjt:  SKQDVKKNDFGPLGNLKRQMQKNS

A0A6J1DQF0 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

6.9e-176

98.42

Show/hide

Query:  MSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVPFTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTY
        MSATFPTS IVSSSHSNEFIRLC LKSKGNASFNSNFRFVGCKVPFTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTY
Subjt:  MSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVPFTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTY

Query:  KRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSE
        KRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSE
Subjt:  KRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSE

Query:  EPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKN
        EPIEEPEVINMGIISGQDKFMTFD+NSD+DDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEIT+NAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKN
Subjt:  EPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKN

Query:  DFGPLGNLKRQMQKNS
        DFGPLGNLKRQMQKNS
Subjt:  DFGPLGNLKRQMQKNS

SwissProt top hits

e value

%identity

Alignment

A0A1D6HQ92 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

6.0e-52

50.23

Show/hide

Query:  SPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLR--VTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAEC
        SPWEGAV Y+R+++V H+EY +TLERLG   LS+  S++RA+ +GL      +    P  TPV +S+DVTR+  +LRLDGIV+TVITL C+RC EPA + 
Subjt:  SPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLR--VTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAEC

Query:  VFSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDE---------DDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLR
        +F+NFSL+L+E+P+EE    ++G I        F E+ D+         D ++ ID DD+L+FP  +KEIDISK+IRD++HLEITL+A+CNP CKG+CL 
Subjt:  VFSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDE---------DDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLR

Query:  CGINLN-IGSCNCSKQDVK
        CG NLN   SC C  ++V+
Subjt:  CGINLN-IGSCNCSKQDVK

Q9LT27 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

2.7e-84

59.48

Show/hide

Query:  FTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKD
        FTE I+   L   +   +  + +S  E + I  DWEDQE + E+ GSPWEG+V Y+RN+SV+HVEYCTTLERLG  +LSTDVSK RAS MGLRVTK VKD
Subjt:  FTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKD

Query:  YPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPP
        YP GTPVQ+S+DV RK+KKLRLDGIV+TVITL C RC E   E +FSNFSL+L+EEP+EEP+VI++G   G DK     E+ D++D+  ID +D+L+FPP
Subjt:  YPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPP

Query:  VEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKNDFGPLGNLKRQMQK
          KEIDISK+IRD++HLEIT+ AIC+  CKGMCL+CG NLN   C+C +++ K   +GPLGNL+ QMQ+
Subjt:  VEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKNDFGPLGNLKRQMQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G19810.1 Protein of unknown function (DUF177)

1.9e-85

59.48

Show/hide

Query:  FTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKD
        FTE I+   L   +   +  + +S  E + I  DWEDQE + E+ GSPWEG+V Y+RN+SV+HVEYCTTLERLG  +LSTDVSK RAS MGLRVTK VKD
Subjt:  FTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTYKRNSSVSHVEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKD

Query:  YPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPP
        YP GTPVQ+S+DV RK+KKLRLDGIV+TVITL C RC E   E +FSNFSL+L+EEP+EEP+VI++G   G DK     E+ D++D+  ID +D+L+FPP
Subjt:  YPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSEEPIEEPEVINMGIISGQDKFMTFDENSDEDDEELIDLDDQLYFPP

Query:  VEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKNDFGPLGNLKRQMQK
          KEIDISK+IRD++HLEIT+ AIC+  CKGMCL+CG NLN   C+C +++ K   +GPLGNL+ QMQ+
Subjt:  VEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKNDFGPLGNLKRQMQK

Sequences

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CDS sequence

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TTTAAGATGTCAGCTACATTTCCCACATCATCCATAGTTTCATCTTCTCATTCCAATGAATTTATTAGGCTTTGCTGCTTGAAATCCAAAGGGAATGCTTCTTTCAATTC
GAATTTCCGCTTTGTTGGTTGTAAAGTTCCATTTACGGAAAATATCCAGGCAACCATGCTAAAATTTGCTTCCCTAAAGGGTGTGAAACCTGCTTATCAGTCCCTTTTTG
AAGACAACATTATAATTTCTGATTGGGAGGATCAAGAAGGGGACACTGAAGAGATGGGGTCACCTTGGGAAGGAGCAGTTACTTATAAGAGGAACTCTTCAGTTTCTCAT
GTGGAGTACTGCACAACATTAGAGAGGCTTGGATTTGAAAAGCTTTCGACCGATGTCTCGAAATCTAGAGCATCGAAGATGGGTCTGCGGGTAACAAAGGCTGTGAAAGA
TTATCCATTCGGAACGCCTGTTCAAATCTCTATTGATGTTACAAGGAAAGAAAAAAAGTTGAGGCTTGATGGGATTGTTAAAACTGTCATCACTCTTGATTGCTATAGGT
GTTGTGAACCTGCTGCTGAATGTGTTTTCTCAAATTTTTCACTTATACTGAGCGAGGAACCGATTGAGGAACCTGAGGTCATAAACATGGGAATCATCAGTGGGCAGGAT
AAGTTCATGACATTCGATGAAAATAGTGATGAAGATGATGAAGAGTTGATTGATTTGGATGACCAACTCTACTTTCCTCCTGTAGAGAAAGAAATAGATATATCAAAGAA
CATAAGAGACATTTTGCATCTGGAAATCACACTGAATGCGATATGCAACCCGGGATGCAAAGGTATGTGTCTGAGATGTGGTATAAATTTGAACATTGGAAGTTGTAACT
GTAGTAAACAGGATGTAAAGAAGAATGATTTTGGTCCTCTTGGAAATTTGAAAAGGCAAATGCAGAAAAATTCA

mRNA sequence

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Protein sequence

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FKMSATFPTSSIVSSSHSNEFIRLCCLKSKGNASFNSNFRFVGCKVPFTENIQATMLKFASLKGVKPAYQSLFEDNIIISDWEDQEGDTEEMGSPWEGAVTYKRNSSVSH
VEYCTTLERLGFEKLSTDVSKSRASKMGLRVTKAVKDYPFGTPVQISIDVTRKEKKLRLDGIVKTVITLDCYRCCEPAAECVFSNFSLILSEEPIEEPEVINMGIISGQD
KFMTFDENSDEDDEELIDLDDQLYFPPVEKEIDISKNIRDILHLEITLNAICNPGCKGMCLRCGINLNIGSCNCSKQDVKKNDFGPLGNLKRQMQKNS

MS013678 (gene) of Bitter gourd (TR) v1 genome