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MS013690 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013690
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionexopolygalacturonase-like
Genome locationscaffold263:197079..197390
RNA-Seq ExpressionMS013690
SyntenyMS013690
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0016798 - hydrolase activity, acting on glycosyl bonds (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059167.1 exopolygalacturonase-like [Cucumis melo var. makuwa]8.2e-0859.18Show/hide
Query:  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE
        +++YC WNQCNRKV  KI   +  FKNI+GTSATP+ VK V +KS+ CE
Subjt:  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE
XP_022151199.1 exopolygalacturonase-like, partial [Momordica charantia]4.8e-0862Show/hide
Query:  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCED
        +++YC WNQCNRKV   I      FKNI+GTSATPI VK V +KSV CED
Subjt:  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCED
XP_022153637.1 polygalacturonase-like [Momordica charantia]1.7e-0855.17Show/hide
Query:  TPLDFATLSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE
        T + F  + +++YC WNQCNRKV   I      FKNI+GTSATPI VK V +KSV CE
Subjt:  TPLDFATLSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE
XP_022157826.1 exopolygalacturonase-like [Momordica charantia]6.3e-0861.22Show/hide
Query:  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE
        +++YC WNQCNRKV  KI      FKNIKGTSATP+ VK V +KS+ CE
Subjt:  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE
XP_038895545.1 exopolygalacturonase-like [Benincasa hispida]3.7e-0863.27Show/hide
Query:  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE
        +++YC WNQCNRKV  KI      FKNIKGTSATP+ VK V +KSV CE
Subjt:  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE
TrEMBL top hitse value%identityAlignment
A0A5A7UTD3 Exopolygalacturonase-like4.0e-0859.18Show/hide
Query:  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE
        +++YC WNQCNRKV  KI   +  FKNI+GTSATP+ VK V +KS+ CE
Subjt:  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE
A0A5D3D708 Exopolygalacturonase-like4.0e-0859.18Show/hide
Query:  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE
        +++YC WNQCNRKV  KI   +  FKNI+GTSATP+ VK V +KS+ CE
Subjt:  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE
A0A6J1DCB0 exopolygalacturonase-like2.3e-0862Show/hide
Query:  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCED
        +++YC WNQCNRKV   I      FKNI+GTSATPI VK V +KSV CED
Subjt:  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCED
A0A6J1DJH0 polygalacturonase-like8.0e-0955.17Show/hide
Query:  TPLDFATLSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE
        T + F  + +++YC WNQCNRKV   I      FKNI+GTSATPI VK V +KSV CE
Subjt:  TPLDFATLSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE
A0A6J1DZB6 exopolygalacturonase-like3.0e-0861.22Show/hide
Query:  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE
        +++YC WNQCNRKV  KI      FKNIKGTSATP+ VK V +KS+ CE
Subjt:  NKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCE
SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)3.3e-0444Show/hide
Query:  LSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSC
        L ++ YC +NQC  +V   +      FKNIKGTS T   VK V +KS  C
Subjt:  LSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSC
Q39766 Polygalacturonase1.4e-0538.46Show/hide
Query:  LSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCED
        L +++YC WN+C +    K+   +  FKNI+GTSA P  +KF+ + S  C++
Subjt:  LSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCED
Q39786 Polygalacturonase1.4e-0538.46Show/hide
Query:  LSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCED
        L +++YC WN+C +    K+   +  FKNI+GTSA P  +KF+ + S  C++
Subjt:  LSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCED
Arabidopsis top hitse value%identityAlignment
AT3G07850.1 Pectin lyase-like superfamily protein1.0e-0336Show/hide
Query:  LSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSC
        L +++YC +  C   V  ++       K IKGTSAT + VK + +K V C
Subjt:  LSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSC
AT3G14040.1 Pectin lyase-like superfamily protein6.9e-0540Show/hide
Query:  LSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSC
        L +++YC +  C   V  K+       KNIKGTSAT + VK + +K V C
Subjt:  LSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSC

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAGACTCCTCTTGACTTTGCTACTTTGTCAAATAAAAAATATTGTCAATGGAATCAATGCAACCGAAAGGTGTGTATTAAAATCGTGTTTCGTTCATTCATCTTCAAGAA
TATCAAAGGTACTTCTGCTACTCCGATCACAGTCAAATTTGTTTACAACAAAAGTGTATCATGTGAGGAT
mRNA sequenceShow/hide mRNA sequence
GAGACTCCTCTTGACTTTGCTACTTTGTCAAATAAAAAATATTGTCAATGGAATCAATGCAACCGAAAGGTGTGTATTAAAATCGTGTTTCGTTCATTCATCTTCAAGAA
TATCAAAGGTACTTCTGCTACTCCGATCACAGTCAAATTTGTTTACAACAAAAGTGTATCATGTGAGGAT
Protein sequenceShow/hide protein sequence
ETPLDFATLSNKKYCQWNQCNRKVCIKIVFRSFIFKNIKGTSATPITVKFVYNKSVSCED