CuGenDBv2

Gene ID	MS013703
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Nucleolar protein 16
Genome location	scaffold263:284801..285822
RNA-Seq Expression	MS013703
Synteny	MS013703
Gene Ontology terms	GO:0042273 - ribosomal large subunit biogenesis (biological process) GO:0005730 - nucleolus (cellular component)
InterPro domains	IPR019002 - Ribosome biogenesis protein Nop16

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7014368.1 hypothetical protein SDJN02_24545, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.7e-91

90.21

Show/hide

Query:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD
        MGRSRRKYK+SR KV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESD LQV PPSL PS D
Subjt:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD

Query:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR
        PDSVLD SGSD EEDDLK+ALGKKR+ GKS PLKPLTT+QRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSC DKNPLILTR
Subjt:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR

XP_022151256.1 nucleolar protein 16 [Momordica charantia]

1.6e-105

100

Show/hide

Query:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD
        MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD
Subjt:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD

Query:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR
        PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR
Subjt:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR

XP_022954094.1 uncharacterized protein LOC111456462 [Cucurbita moschata]

1.6e-92

90.72

Show/hide

Query:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD
        MGRSRRKYK+SR KV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESD LQV PPSL PS D
Subjt:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD

Query:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR
        PDSVLD SGSD EEDDLK+ALGKKR+DGKS PLKPLTT+QRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSC DKNPLILTR
Subjt:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR

XP_022991747.1 uncharacterized protein LOC111488281 [Cucurbita maxima]

1.4e-93

91.75

Show/hide

Query:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD
        MGRSRRKYK+SR KV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQV PPSL PS D
Subjt:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD

Query:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR
        PDSVLD SGSD EEDDLK+ALGKKRKDGKS PLKPLTT+QRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSC DKNPLILTR
Subjt:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR

XP_023547523.1 uncharacterized protein LOC111806441 [Cucurbita pepo subsp. pepo]

5.4e-93

91.24

Show/hide

Query:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD
        MGRSRRKYK+SR KV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQV PPSL PS D
Subjt:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD

Query:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR
        PDSVLD SGSD EEDDLK+ALGKKRKDGKS PLKPLTT+QRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYH C DKNPLILTR
Subjt:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BSM4 Nucleolar protein 16

7.1e-91

88.66

Show/hide

Query:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD
        MGRSRRKYKKSRPKV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQVP     PS D
Subjt:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD

Query:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR
        PDSVLD SGSD EEDDLK+ALGKKRKDGKS PL+PLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRYHSC DKNPLILTR
Subjt:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR

A0A5A7VLA5 Nucleolar protein 16

7.1e-91

88.66

Show/hide

Query:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD
        MGRSRRKYKKSRPKV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEK SVI NYKSFGV+SNPNLLSVRSRTDHIVESDSLQVP     PS D
Subjt:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD

Query:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR
        PDSVLD SGSD EEDDLK+ALGKKRKDGKS PL+PLTT+QRVHVG+LIEKYGDDY+RMFMDTKLNSMQHSVATLEKLCKRYHSC DKNPLILTR
Subjt:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR

A0A6J1DE29 Nucleolar protein 16

7.8e-106

100

Show/hide

Query:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD
        MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD
Subjt:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD

Query:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR
        PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR
Subjt:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR

A0A6J1GRW5 Nucleolar protein 16

7.6e-93

90.72

Show/hide

Query:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD
        MGRSRRKYK+SR KV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESD LQV PPSL PS D
Subjt:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD

Query:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR
        PDSVLD SGSD EEDDLK+ALGKKR+DGKS PLKPLTT+QRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSC DKNPLILTR
Subjt:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR

A0A6J1JMQ4 Nucleolar protein 16

6.9e-94

91.75

Show/hide

Query:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD
        MGRSRRKYK+SR KV+VGLPKRNP VFKPSFCMPPKLRSLLAEQFEE P WDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQV PPSL PS D
Subjt:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD

Query:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR
        PDSVLD SGSD EEDDLK+ALGKKRKDGKS PLKPLTT+QRVHVGRLIEKYGDD+ERMFMDTKLNSMQHSVATLEKLCKRYHSC DKNPLILTR
Subjt:  PDSVLDPSGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G02870.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

1.7e-65

62.76

Show/hide

Query:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD
        M RSRRKY+ SR KVRV LPK+NP +FKP+F  PPKLR+L+    ++ P WD++ASVI NYKSFGV+SNPNLL +R+RTDH+++ DSL VPPP   P+ D
Subjt:  MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGD

Query:  P-DSVLDP--SGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILT
        P     +P  SGS+ EEDDLK+ALGK+RKDGKS PL+PLTT+QR H+ RL+EK+GDD E M+ D KLNSMQHSVATL KLC RY    DKNP++++
Subjt:  P-DSVLDP--SGSDAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGAAGATCTCGCAGAAAGTACAAGAAATCTCGGCCAAAAGTCAGGGTCGGCCTTCCGAAGAGGAATCCCCAGGTTTTCAAGCCCTCCTTCTGCATGCCGCCCAAGCT
CCGCTCCTTGCTCGCCGAACAATTTGAAGAACATCCCATCTGGGACGAAAAAGCCAGTGTAATTCACAATTACAAGTCCTTCGGCGTTCTTTCTAACCCCAATTTGCTCA
GCGTTCGCTCCCGCACCGATCATATCGTCGAGAGCGACTCTCTCCAGGTTCCGCCGCCGTCTCTGCTGCCTTCCGGTGACCCTGATTCCGTTCTCGATCCCTCCGGTAGC
GACGCGGAGGAGGACGATTTGAAATCAGCACTGGGAAAGAAGCGGAAAGATGGGAAATCTGGGCCTCTAAAACCGTTGACCACGGTTCAGCGCGTTCATGTTGGTAGGCT
AATTGAGAAATATGGAGACGATTACGAGAGGATGTTCATGGATACAAAGCTGAACTCGATGCAGCATTCTGTTGCTACTCTGGAGAAACTTTGCAAAAGATATCACTCTT
GTCCAGATAAGAATCCGTTGATATTGACCCGT

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGRSRRKYKKSRPKVRVGLPKRNPQVFKPSFCMPPKLRSLLAEQFEEHPIWDEKASVIHNYKSFGVLSNPNLLSVRSRTDHIVESDSLQVPPPSLLPSGDPDSVLDPSGS
DAEEDDLKSALGKKRKDGKSGPLKPLTTVQRVHVGRLIEKYGDDYERMFMDTKLNSMQHSVATLEKLCKRYHSCPDKNPLILTR

MS013703 (gene) of Bitter gourd (TR) v1 genome