; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013722 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013722
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionnuclear transcription factor Y subunit B-5-like
Genome locationscaffold263:464263..464673
RNA-Seq ExpressionMS013722
SyntenyMS013722
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003956 - Transcription factor, NFYB/HAP3, conserved site
IPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008451614.1 PREDICTED: nuclear transcription factor Y subunit B-1 [Cucumis melo]5.5e-6080.39Show/hide
Query:  MDDNTEKSERVEEFKYGFTGGDGGG----------------GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MD+NT   ER  EFKY FTGG   G                GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTEKSERVEEFKYGFTGGDGGG----------------GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSSN
        EKRKTVNGDDIC ALATLGFDDYAEPLRRYLVRYR+MEGERAQQNKGCCN++N
Subjt:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSSN

XP_011659350.1 nuclear transcription factor Y subunit B-5 [Cucumis sativus]3.2e-6081.05Show/hide
Query:  MDDNTEKSERVEEFKYGFTGGDGGG----------------GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MD+NT   ER  EFKY FTGG   G                GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTEKSERVEEFKYGFTGGDGGG----------------GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSSN
        EKRKTVNGDDIC ALATLGFDDYAEPLRRYLVRYR+MEGERAQQNKGCCN+SN
Subjt:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSSN

XP_022144461.1 nuclear transcription factor Y subunit B-5-like [Momordica charantia]8.0e-6796.35Show/hide
Query:  MDDNTEKSERVEEFKYGFTGGDGGGGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALA
        MDDNTEKSERVEEFKY FTGGD    GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALA
Subjt:  MDDNTEKSERVEEFKYGFTGGDGGGGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALA

Query:  TLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSSN
        TLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSSN
Subjt:  TLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSSN

XP_023549145.1 nuclear transcription factor Y subunit B-1-like [Cucurbita pepo subsp. pepo]5.5e-6080.26Show/hide
Query:  MDDNTEKSERVEEFKYGFTGGDGGG----------------GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MDDNT   ER+ EFKY FT G GGG                GG VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTEKSERVEEFKYGFTGGDGGG----------------GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS
        EKRKTVNGDDIC ALATLGFDDYAEPLRRYL+RYRE+EGERAQQNKGCCN++
Subjt:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS

XP_038876756.1 nuclear transcription factor Y subunit B-1-like [Benincasa hispida]2.3e-6181.7Show/hide
Query:  MDDNTEKSERVEEFKYGFTGGDGGG----------------GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MD+NT   ER+ EFKY FTGG G G                GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTEKSERVEEFKYGFTGGDGGG----------------GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSSN
        EKRKTVNGDDIC ALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCN++N
Subjt:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSSN

TrEMBL top hitse value%identityAlignment
A0A0A0K954 CBFD_NFYB_HMF domain-containing protein1.6e-6081.05Show/hide
Query:  MDDNTEKSERVEEFKYGFTGGDGGG----------------GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MD+NT   ER  EFKY FTGG   G                GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTEKSERVEEFKYGFTGGDGGG----------------GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSSN
        EKRKTVNGDDIC ALATLGFDDYAEPLRRYLVRYR+MEGERAQQNKGCCN+SN
Subjt:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSSN

A0A1S3BT19 nuclear transcription factor Y subunit B-12.7e-6080.39Show/hide
Query:  MDDNTEKSERVEEFKYGFTGGDGGG----------------GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MD+NT   ER  EFKY FTGG   G                GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTEKSERVEEFKYGFTGGDGGG----------------GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSSN
        EKRKTVNGDDIC ALATLGFDDYAEPLRRYLVRYR+MEGERAQQNKGCCN++N
Subjt:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSSN

A0A6J1CTG8 nuclear transcription factor Y subunit B-5-like3.9e-6796.35Show/hide
Query:  MDDNTEKSERVEEFKYGFTGGDGGGGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALA
        MDDNTEKSERVEEFKY FTGGD    GVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALA
Subjt:  MDDNTEKSERVEEFKYGFTGGDGGGGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALA

Query:  TLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSSN
        TLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSSN
Subjt:  TLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSSN

A0A6J1GM85 nuclear transcription factor Y subunit B-1-like1.7e-5979.08Show/hide
Query:  MDDNTEKSERVEEFKYGFTGGDGGG-----------------GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCH
        MDDNT   ER+ EFKY FT G G G                 GG VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCH
Subjt:  MDDNTEKSERVEEFKYGFTGGDGGG-----------------GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCH

Query:  KEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS
        KEKRKTVNGDDIC ALATLGFDDYAEPLRRYL+RYRE+EGERAQQNKGCCN++
Subjt:  KEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS

A0A6J1JM11 nuclear transcription factor Y subunit B-12.7e-6080.26Show/hide
Query:  MDDNTEKSERVEEFKYGFTGGDGGG----------------GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
        MDDNT   ER+ EFKY FT G GGG                GG VKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK
Subjt:  MDDNTEKSERVEEFKYGFTGGDGGG----------------GGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHK

Query:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS
        EKRKTVNGDDIC ALATLGFDDYAEPLRRYL+RYRE+EGERAQQNKGCCN++
Subjt:  EKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCNSS

SwissProt top hitse value%identityAlignment
O82248 Nuclear transcription factor Y subunit B-54.1e-4279.09Show/hide
Query:  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQ
        +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+  
Subjt:  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQ

Query:  QN-KGCCNSS
         + KG   SS
Subjt:  QN-KGCCNSS

P25209 Nuclear transcription factor Y subunit B1.6e-3871.57Show/hide
Query:  GGGGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREME
        GGGGG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+QECVSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL +YREME
Subjt:  GGGGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREME

Query:  GE
        G+
Subjt:  GE

Q0J7P4 Nuclear transcription factor Y subunit B-111.2e-3871.17Show/hide
Query:  YGFTGGDGGGGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYL
        Y   GG GGG    KEQDR LPIANV RIMK+ LP NAKISKE+KET+QECVSEFISFVTGEASDKC +EKRKT+NGDD+  A+ TLGF+ Y  PL+ YL
Subjt:  YGFTGGDGGGGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYL

Query:  VRYREMEGERA
         RYRE EGE+A
Subjt:  VRYREMEGERA

Q60EQ4 Nuclear transcription factor Y subunit B-31.5e-3970.37Show/hide
Query:  GFTGGDGGGGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLV
        G  GG GGGGG V+EQDR LPIAN+ RIMK+ +P N KI+K+AKET+QECVSEFISF+T EASDKC +EKRKT+NGDD+  A+ATLGF+DY EPL+ YL 
Subjt:  GFTGGDGGGGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLV

Query:  RYREMEGE
        +YREMEG+
Subjt:  RYREMEGE

Q9SLG0 Nuclear transcription factor Y subunit B-14.3e-3968.64Show/hide
Query:  GDGG-GGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYR
        GDGG  GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYR
Subjt:  GDGG-GGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYR

Query:  EMEGERAQQNKGCCNSSN
        E+EG+    NKG   S +
Subjt:  EMEGERAQQNKGCCNSSN

Arabidopsis top hitse value%identityAlignment
AT2G38880.1 nuclear factor Y, subunit B13.0e-4068.64Show/hide
Query:  GDGG-GGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYR
        GDGG  GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYR
Subjt:  GDGG-GGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYR

Query:  EMEGERAQQNKGCCNSSN
        E+EG+    NKG   S +
Subjt:  EMEGERAQQNKGCCNSSN

AT2G38880.2 nuclear factor Y, subunit B13.0e-4068.64Show/hide
Query:  GDGG-GGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYR
        GDGG  GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYR
Subjt:  GDGG-GGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYR

Query:  EMEGERAQQNKGCCNSSN
        E+EG+    NKG   S +
Subjt:  EMEGERAQQNKGCCNSSN

AT2G38880.3 nuclear factor Y, subunit B13.0e-4068.64Show/hide
Query:  GDGG-GGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYR
        GDGG  GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYR
Subjt:  GDGG-GGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYR

Query:  EMEGERAQQNKGCCNSSN
        E+EG+    NKG   S +
Subjt:  EMEGERAQQNKGCCNSSN

AT2G38880.5 nuclear factor Y, subunit B13.0e-4068.64Show/hide
Query:  GDGG-GGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYR
        GDGG  GG V+EQDR LPIAN+ RIMK+ LPPN KI K+AK+T+QECVSEFISF+T EASDKC KEKRKTVNGDD+  A+ATLGF+DY EPL+ YL RYR
Subjt:  GDGG-GGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYR

Query:  EMEGERAQQNKGCCNSSN
        E+EG+    NKG   S +
Subjt:  EMEGERAQQNKGCCNSSN

AT2G47810.1 nuclear factor Y, subunit B52.9e-4379.09Show/hide
Query:  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQ
        +VKEQDRLLPIANVGRIMK ILP NAK+SKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIC A+A LGFDDYA  L++YL RYR +EGE+  
Subjt:  VVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEPLRRYLVRYREMEGERAQ

Query:  QN-KGCCNSS
         + KG   SS
Subjt:  QN-KGCCNSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATAACACAGAGAAATCAGAGAGAGTAGAAGAATTCAAGTATGGTTTCACGGGCGGCGACGGTGGCGGTGGCGGGGTTGTGAAGGAGCAAGATCGGCTACTTCC
GATAGCGAATGTGGGGAGGATAATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAGGAATGTGTGTCGGAGTTCATCAGCTTTG
TCACCGGCGAGGCGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACGGTGAACGGCGACGACATCTGCTCGGCCTTGGCGACGCTCGGTTTCGACGATTACGCGGAGCCT
TTGAGGAGGTATTTGGTTAGGTATAGAGAGATGGAAGGGGAGAGAGCTCAACAGAATAAGGGATGCTGCAATAGTTCTAAT
mRNA sequenceShow/hide mRNA sequence
ATGGATGATAACACAGAGAAATCAGAGAGAGTAGAAGAATTCAAGTATGGTTTCACGGGCGGCGACGGTGGCGGTGGCGGGGTTGTGAAGGAGCAAGATCGGCTACTTCC
GATAGCGAATGTGGGGAGGATAATGAAGCAAATTCTTCCTCCAAATGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAGGAATGTGTGTCGGAGTTCATCAGCTTTG
TCACCGGCGAGGCGTCCGATAAGTGCCATAAGGAGAAGAGGAAGACGGTGAACGGCGACGACATCTGCTCGGCCTTGGCGACGCTCGGTTTCGACGATTACGCGGAGCCT
TTGAGGAGGTATTTGGTTAGGTATAGAGAGATGGAAGGGGAGAGAGCTCAACAGAATAAGGGATGCTGCAATAGTTCTAAT
Protein sequenceShow/hide protein sequence
MDDNTEKSERVEEFKYGFTGGDGGGGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICSALATLGFDDYAEP
LRRYLVRYREMEGERAQQNKGCCNSSN