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MS013724 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013724
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein indeterminate-domain 2-like
Genome locationscaffold263:478133..478612
RNA-Seq ExpressionMS013724
SyntenyMS013724
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0068031.1 protein indeterminate-domain 2-like [Cucumis melo var. makuwa]3.6e-4266.26Show/hide
Query:  LQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPL-EVQHSDQQ-DMVGINMGMYGHMMTTKEQD-NCSSSNSSFLVHEKGQW-SVSRFSDGDVSG
        LQ + SGTA LVTSATALLQKAAQIGAT SS+G L SPL E+ HSD Q DMVG+NMGMYGHMM  KEQD NCS+++SSF+  EKGQW  +SRFS G    
Subjt:  LQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPL-EVQHSDQQ-DMVGINMGMYGHMMTTKEQD-NCSSSNSSFLVHEKGQW-SVSRFSDGDVSG

Query:  --ESPMMTLDLLGEGGWRLRQLQEDQNRHHRHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF
          E+ MMTLDLLGE GWRLR LQ D++ HH +H ++ +PIMKHFE+Q+F     NVDKSIFEF
Subjt:  --ESPMMTLDLLGEGGWRLRQLQEDQNRHHRHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF

XP_004136179.1 zinc finger protein GAI-ASSOCIATED FACTOR 1 [Cucumis sativus]4.5e-3764.88Show/hide
Query:  LQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPL-EVQHSDQQ-DMVGI-NMGMYGHMMTTKEQD-NCSSSN-SSFLVHEKGQW-SVSRFS-DGD
        LQ +G+ TA LVTSATALLQKAAQIGAT SS+G L SPL E+ HSDQ  DMVG+ NMGMYGHMM  KEQD NCS++N SSF+V EKGQW  +SRFS  G 
Subjt:  LQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPL-EVQHSDQQ-DMVGI-NMGMYGHMMTTKEQD-NCSSSN-SSFLVHEKGQW-SVSRFS-DGD

Query:  VSGES--PMMTLDLLGEGGWRLRQLQED-QNRHHRHHHRQTMPIMKHF-ELQNFDHGDPNVDKSIFEF
         SGE    MMTLDLLGE GWRLR LQ D ++ HH    ++ +PIMKHF ++QNF     NVDKSIF+F
Subjt:  VSGES--PMMTLDLLGEGGWRLRQLQED-QNRHHRHHHRQTMPIMKHF-ELQNFDHGDPNVDKSIFEF

XP_008451665.1 PREDICTED: protein indeterminate-domain 2-like [Cucumis melo]4.7e-4266.26Show/hide
Query:  LQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPL-EVQHSDQQ-DMVGINMGMYGHMMTTKEQD-NCSSSNSSFLVHEKGQW-SVSRFSDGDVSG
        LQ + SGTA LVTSATALLQKAAQIGAT SS+G L SPL E+ HSD Q DMVG+NMGMYGHMM  KEQD NCS+++SSF+  EKGQW  +SRFS G    
Subjt:  LQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPL-EVQHSDQQ-DMVGINMGMYGHMMTTKEQD-NCSSSNSSFLVHEKGQW-SVSRFSDGDVSG

Query:  --ESPMMTLDLLGEGGWRLRQLQEDQNRHHRHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF
          E+ MMTLDLLGE GWRLR LQ D++ HH +H ++ +PIMKHFE+Q+F     NVDKSIFEF
Subjt:  --ESPMMTLDLLGEGGWRLRQLQEDQNRHHRHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF

XP_022153576.1 protein indeterminate-domain 2-like [Momordica charantia]9.9e-7796.23Show/hide
Query:  SFLQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPLEVQHSDQQDMVGINMGMYGHMMTTKEQDNCSSSNSSFLVHEKGQWSVSRFSDGDVSGES
        S  QVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPLEVQHSDQQDMVGI+MGMYGHMMTTKEQDNCSSSNSSFLVHEKGQWSVSRFSDGDVSGES
Subjt:  SFLQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPLEVQHSDQQDMVGINMGMYGHMMTTKEQDNCSSSNSSFLVHEKGQWSVSRFSDGDVSGES

Query:  PMMTLDLLGEGGWRLRQLQEDQNRHHRHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF
        PMMTLDLLGEGGWRLRQLQEDQN   RHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF
Subjt:  PMMTLDLLGEGGWRLRQLQEDQNRHHRHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF

XP_038876751.1 zinc finger protein GAI-ASSOCIATED FACTOR 1-like [Benincasa hispida]6.7e-4972.22Show/hide
Query:  SFLQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSP-LEVQHSDQQDMVGINMGMYGHMMTTKEQDNCSSSNSSFLVHEKGQWS-VSRFSDGD-VS
        S LQ SG  T ALVTSATALLQKAAQIGAT SS+G L SP LE+ HSDQ DMVG+NM MYGHMM  KEQDNC+S++SSF+VHEKGQW  +SRFS GD  S
Subjt:  SFLQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSP-LEVQHSDQQDMVGINMGMYGHMMTTKEQDNCSSSNSSFLVHEKGQWS-VSRFSDGD-VS

Query:  GESPMMTLDLLGEGGWRLRQLQEDQNRHHRHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF
         ES MMTLDLLGE GWRLRQLQ +++    HHH + MPIMKHFE+QNF H D NVDKSIFEF
Subjt:  GESPMMTLDLLGEGGWRLRQLQEDQNRHHRHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF

TrEMBL top hitse value%identityAlignment
A0A0A0K7P2 Uncharacterized protein2.2e-3764.88Show/hide
Query:  LQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPL-EVQHSDQQ-DMVGI-NMGMYGHMMTTKEQD-NCSSSN-SSFLVHEKGQW-SVSRFS-DGD
        LQ +G+ TA LVTSATALLQKAAQIGAT SS+G L SPL E+ HSDQ  DMVG+ NMGMYGHMM  KEQD NCS++N SSF+V EKGQW  +SRFS  G 
Subjt:  LQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPL-EVQHSDQQ-DMVGI-NMGMYGHMMTTKEQD-NCSSSN-SSFLVHEKGQW-SVSRFS-DGD

Query:  VSGES--PMMTLDLLGEGGWRLRQLQED-QNRHHRHHHRQTMPIMKHF-ELQNFDHGDPNVDKSIFEF
         SGE    MMTLDLLGE GWRLR LQ D ++ HH    ++ +PIMKHF ++QNF     NVDKSIF+F
Subjt:  VSGES--PMMTLDLLGEGGWRLRQLQED-QNRHHRHHHRQTMPIMKHF-ELQNFDHGDPNVDKSIFEF

A0A1S3BT63 protein indeterminate-domain 2-like2.3e-4266.26Show/hide
Query:  LQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPL-EVQHSDQQ-DMVGINMGMYGHMMTTKEQD-NCSSSNSSFLVHEKGQW-SVSRFSDGDVSG
        LQ + SGTA LVTSATALLQKAAQIGAT SS+G L SPL E+ HSD Q DMVG+NMGMYGHMM  KEQD NCS+++SSF+  EKGQW  +SRFS G    
Subjt:  LQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPL-EVQHSDQQ-DMVGINMGMYGHMMTTKEQD-NCSSSNSSFLVHEKGQW-SVSRFSDGDVSG

Query:  --ESPMMTLDLLGEGGWRLRQLQEDQNRHHRHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF
          E+ MMTLDLLGE GWRLR LQ D++ HH +H ++ +PIMKHFE+Q+F     NVDKSIFEF
Subjt:  --ESPMMTLDLLGEGGWRLRQLQEDQNRHHRHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF

A0A5D3D2F3 Protein indeterminate-domain 2-like1.7e-4266.26Show/hide
Query:  LQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPL-EVQHSDQQ-DMVGINMGMYGHMMTTKEQD-NCSSSNSSFLVHEKGQW-SVSRFSDGDVSG
        LQ + SGTA LVTSATALLQKAAQIGAT SS+G L SPL E+ HSD Q DMVG+NMGMYGHMM  KEQD NCS+++SSF+  EKGQW  +SRFS G    
Subjt:  LQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPL-EVQHSDQQ-DMVGINMGMYGHMMTTKEQD-NCSSSNSSFLVHEKGQW-SVSRFSDGDVSG

Query:  --ESPMMTLDLLGEGGWRLRQLQEDQNRHHRHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF
          E+ MMTLDLLGE GWRLR LQ D++ HH +H ++ +PIMKHFE+Q+F     NVDKSIFEF
Subjt:  --ESPMMTLDLLGEGGWRLRQLQEDQNRHHRHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF

A0A6J1DL17 protein indeterminate-domain 2-like4.8e-7796.23Show/hide
Query:  SFLQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPLEVQHSDQQDMVGINMGMYGHMMTTKEQDNCSSSNSSFLVHEKGQWSVSRFSDGDVSGES
        S  QVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPLEVQHSDQQDMVGI+MGMYGHMMTTKEQDNCSSSNSSFLVHEKGQWSVSRFSDGDVSGES
Subjt:  SFLQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPLEVQHSDQQDMVGINMGMYGHMMTTKEQDNCSSSNSSFLVHEKGQWSVSRFSDGDVSGES

Query:  PMMTLDLLGEGGWRLRQLQEDQNRHHRHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF
        PMMTLDLLGEGGWRLRQLQEDQN   RHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF
Subjt:  PMMTLDLLGEGGWRLRQLQEDQNRHHRHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCTCTTTCCTTCAGGTTTCTGGGTCGGGCACGGCAGCGCTTGTAACATCAGCCACCGCCTTGTTGCAGAAAGCTGCACAGATCGGTGCCACTGCAAGCTCCATAGGTGG
TTTGAACTCACCATTGGAAGTGCAACATTCTGATCAACAAGACATGGTAGGGATCAATATGGGAATGTATGGACATATGATGACGACGAAAGAACAAGATAATTGTAGTA
GTAGCAACTCGAGCTTTCTCGTCCATGAAAAGGGTCAGTGGTCGGTATCGAGGTTCTCCGATGGTGACGTCAGTGGCGAGAGTCCGATGATGACTCTGGATTTGTTGGGA
GAAGGAGGGTGGAGGTTGAGACAGTTGCAGGAAGATCAAAATCGCCACCATCGCCACCACCACCGTCAGACCATGCCGATTATGAAGCATTTTGAGCTACAAAACTTTGA
TCATGGAGATCCAAATGTTGACAAATCCATATTTGAGTTC
mRNA sequenceShow/hide mRNA sequence
TGCTCTTTCCTTCAGGTTTCTGGGTCGGGCACGGCAGCGCTTGTAACATCAGCCACCGCCTTGTTGCAGAAAGCTGCACAGATCGGTGCCACTGCAAGCTCCATAGGTGG
TTTGAACTCACCATTGGAAGTGCAACATTCTGATCAACAAGACATGGTAGGGATCAATATGGGAATGTATGGACATATGATGACGACGAAAGAACAAGATAATTGTAGTA
GTAGCAACTCGAGCTTTCTCGTCCATGAAAAGGGTCAGTGGTCGGTATCGAGGTTCTCCGATGGTGACGTCAGTGGCGAGAGTCCGATGATGACTCTGGATTTGTTGGGA
GAAGGAGGGTGGAGGTTGAGACAGTTGCAGGAAGATCAAAATCGCCACCATCGCCACCACCACCGTCAGACCATGCCGATTATGAAGCATTTTGAGCTACAAAACTTTGA
TCATGGAGATCCAAATGTTGACAAATCCATATTTGAGTTC
Protein sequenceShow/hide protein sequence
CSFLQVSGSGTAALVTSATALLQKAAQIGATASSIGGLNSPLEVQHSDQQDMVGINMGMYGHMMTTKEQDNCSSSNSSFLVHEKGQWSVSRFSDGDVSGESPMMTLDLLG
EGGWRLRQLQEDQNRHHRHHHRQTMPIMKHFELQNFDHGDPNVDKSIFEF