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MS013740 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013740
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionE3 ubiquitin-protein ligase MIEL1-like
Genome locationscaffold263:629216..629539
RNA-Seq ExpressionMS013740
SyntenyMS013740
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046715.1 E3 ubiquitin-protein ligase MIEL1-like [Cucumis melo var. makuwa]6.6e-0847.06Show/hide
Query:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAG----TLLRTAAHPIADDSGESS--NLGRKMNAEIKRRIGRPVVTSG-----HLSAADRSRV
        MAAI+ LVS+A+LALL FS+SL  +         +SL G     +L T AH I + S ESS      K++ + +RRI RP++ SG     H SA +RSRV
Subjt:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAG----TLLRTAAHPIADDSGESS--NLGRKMNAEIKRRIGRPVVTSG-----HLSAADRSRV

Query:  SSFGVGSLLSIYIVLGLFL
        +SF VGS+L I I LGLFL
Subjt:  SSFGVGSLLSIYIVLGLFL

KAA0068047.1 protein no-on-transient A-like [Cucumis melo var. makuwa]5.6e-0749.09Show/hide
Query:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAGTL----LRTAAHPIADDSGESSNLGRKMNAEIKRRIG---RPVV-----TSGHLSAADRSR
        MAAIKSL+ +++LALL FS+SL+ ++A  RG A NS+ G L    L+TA H IAD  G       KMN  IKR  G   RPV      T    SAA RS+
Subjt:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAGTL----LRTAAHPIADDSGESSNLGRKMNAEIKRRIG---RPVV-----TSGHLSAADRSR

Query:  VSSFGVGSLL
        V+SFG+G LL
Subjt:  VSSFGVGSLL

KAG6575859.1 hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia]1.9e-1562.5Show/hide
Query:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAGTL----LRTAAHPIADDSGESSNLGRKMNAEIKRRIGRPVVTSGHLSAADRSRVSSFGVGS
        MAA+KSLVSVA+LALLLFS+SL A SA  R    NSL G L    L+TAAH IAD+S ESS   RKMN  IKRR+ RPV T    SAA+RSR++S GVGS
Subjt:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAGTL----LRTAAHPIADDSGESSNLGRKMNAEIKRRIGRPVVTSGHLSAADRSRVSSFGVGS

Query:  LLSIYIVLGLFL
        +L   +VLGLFL
Subjt:  LLSIYIVLGLFL

KAG6593163.1 hypothetical protein SDJN03_12639, partial [Cucurbita argyrosperma subsp. sororia]6.6e-0848.18Show/hide
Query:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAGTLLRTAAHPIADDSGESSNLGRKMNAEIKRRIG-RPV-VTSGHLSAADRSRVSSFGVGSLL
        MAAIK+L+S+A++ALLLF +SL  ++A  RG A  SLAG L R      AD    +    +K N  IKRR+  RPV +     SAA+RSR +  GVGS+L
Subjt:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAGTLLRTAAHPIADDSGESSNLGRKMNAEIKRRIG-RPV-VTSGHLSAADRSRVSSFGVGSLL

Query:  SIYIVLGLFL
         I+++LGLFL
Subjt:  SIYIVLGLFL

KGN44886.1 hypothetical protein Csa_015765 [Cucumis sativus]2.5e-0747.32Show/hide
Query:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAGTL----LRTAAHPIADDSGESSNLGRKMNAEIK-------RRIGRPVVTSGHLSAADRSRV
        MAAIKSL+S+++LALL FS+SL+ ++A  RG A NS+   L    L+TA H IAD  G       KMN  IK       R IG    T    SAA+RSRV
Subjt:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAGTL----LRTAAHPIADDSGESSNLGRKMNAEIK-------RRIGRPVVTSGHLSAADRSRV

Query:  SSFGVGSLLSIY
         SFG+G LL  +
Subjt:  SSFGVGSLLSIY

TrEMBL top hitse value%identityAlignment
A0A0A0K929 Uncharacterized protein1.6e-0444.72Show/hide
Query:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAG----TLLRTAAHPIADDSGE-SSNLGRKMN----AEIKRRIGRPVVTSG-----HLSAADR
        MAAI+ L+S+A LAL  FS+SL  +         +SL G    T+L TAAH I D S E SS   RK N     +I++R   P++ S      H SAA+R
Subjt:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAG----TLLRTAAHPIADDSGE-SSNLGRKMN----AEIKRRIGRPVVTSG-----HLSAADR

Query:  -SRVSSFGVGSLLSIYIVLGLFL
         S V+S  VGS+L I I LGLFL
Subjt:  -SRVSSFGVGSLLSIYIVLGLFL

A0A0A0KAQ7 Uncharacterized protein1.2e-0747.32Show/hide
Query:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAGTL----LRTAAHPIADDSGESSNLGRKMNAEIK-------RRIGRPVVTSGHLSAADRSRV
        MAAIKSL+S+++LALL FS+SL+ ++A  RG A NS+   L    L+TA H IAD  G       KMN  IK       R IG    T    SAA+RSRV
Subjt:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAGTL----LRTAAHPIADDSGESSNLGRKMNAEIK-------RRIGRPVVTSGHLSAADRSRV

Query:  SSFGVGSLLSIY
         SFG+G LL  +
Subjt:  SSFGVGSLLSIY

A0A5A7VLE5 Protein no-on-transient A-like2.7e-0749.09Show/hide
Query:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAGTL----LRTAAHPIADDSGESSNLGRKMNAEIKRRIG---RPVV-----TSGHLSAADRSR
        MAAIKSL+ +++LALL FS+SL+ ++A  RG A NS+ G L    L+TA H IAD  G       KMN  IKR  G   RPV      T    SAA RS+
Subjt:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAGTL----LRTAAHPIADDSGESSNLGRKMNAEIKRRIG---RPVV-----TSGHLSAADRSR

Query:  VSSFGVGSLL
        V+SFG+G LL
Subjt:  VSSFGVGSLL

A0A5D3D3Y6 E3 ubiquitin-protein ligase MIEL1-like3.2e-0847.06Show/hide
Query:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAG----TLLRTAAHPIADDSGESS--NLGRKMNAEIKRRIGRPVVTSG-----HLSAADRSRV
        MAAI+ LVS+A+LALL FS+SL  +         +SL G     +L T AH I + S ESS      K++ + +RRI RP++ SG     H SA +RSRV
Subjt:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAG----TLLRTAAHPIADDSGESS--NLGRKMNAEIKRRIGRPVVTSG-----HLSAADRSRV

Query:  SSFGVGSLLSIYIVLGLFL
        +SF VGS+L I I LGLFL
Subjt:  SSFGVGSLLSIYIVLGLFL

A0A6J1JZB1 uncharacterized protein LOC111488793 isoform X12.5e-0543.86Show/hide
Query:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAG-----TLLRTAAHPIADDS-GESSNLGRKMNAEIKRRIGRPVVTSGHLSAADRSRVSSFGV
        MA IKSL+S+A+LALLL  + L   SAA  G AP+ LAG     TL     H +A++  G   +  +K+    +R + R    S   S+A+ SR SSFGV
Subjt:  MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAG-----TLLRTAAHPIADDS-GESSNLGRKMNAEIKRRIGRPVVTSGHLSAADRSRVSSFGV

Query:  GSLLSIYIVLGLFL
        GSLL +  V GLFL
Subjt:  GSLLSIYIVLGLFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCGATTAAATCCCTAGTTTCCGTAGCTATTCTCGCTCTCCTCTTATTCTCTCAATCCCTAGCCGCCACTTCCGCCGCCGGTCGCGGCGAGGCTCCGAATTCTCT
GGCCGGAACGCTCCTTCGGACGGCGGCTCATCCGATTGCGGATGACAGTGGCGAGTCATCTAATTTGGGAAGAAAGATGAATGCTGAAATCAAAAGGCGGATCGGACGGC
CAGTAGTAACTTCCGGCCATCTATCGGCGGCGGATCGGAGCCGAGTATCGTCCTTTGGCGTTGGATCTCTGCTCTCAATATACATTGTTTTGGGATTGTTCCTG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCGATTAAATCCCTAGTTTCCGTAGCTATTCTCGCTCTCCTCTTATTCTCTCAATCCCTAGCCGCCACTTCCGCCGCCGGTCGCGGCGAGGCTCCGAATTCTCT
GGCCGGAACGCTCCTTCGGACGGCGGCTCATCCGATTGCGGATGACAGTGGCGAGTCATCTAATTTGGGAAGAAAGATGAATGCTGAAATCAAAAGGCGGATCGGACGGC
CAGTAGTAACTTCCGGCCATCTATCGGCGGCGGATCGGAGCCGAGTATCGTCCTTTGGCGTTGGATCTCTGCTCTCAATATACATTGTTTTGGGATTGTTCCTG
Protein sequenceShow/hide protein sequence
MAAIKSLVSVAILALLLFSQSLAATSAAGRGEAPNSLAGTLLRTAAHPIADDSGESSNLGRKMNAEIKRRIGRPVVTSGHLSAADRSRVSSFGVGSLLSIYIVLGLFL