CuGenDBv2

Gene ID	MS013756
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	classical arabinogalactan protein 26
Genome location	scaffold263:737061..737450
RNA-Seq Expression	MS013756
Synteny	MS013756
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR039346 - Classical arabinogalactan protein 25/26

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575865.1 hypothetical protein SDJN03_26504, partial [Cucurbita argyrosperma subsp. sororia]

6.3e-37

74.24

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Query:  IFSLYFPIFMAYSASL---ALASYPNYFPPSISSISAAPEFSPAPAP----DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLPPS
        IFSLY PIFMAY+AS+   + ASYPN+FPP ISSISAAPEFSP+P+P    DISPLFPTPGGA LPP  SS PTIPSSPSPPNPDF  +APAPE+PLPPS
Subjt:  IFSLYFPIFMAYSASL---ALASYPNYFPPSISSISAAPEFSPAPAP----DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLPPS

Query:  QSLPISAAAALNSGGWYRPVLVILTAAFAAEV
        QSLP SAAA LNSGGW   + V LTAA  AEV
Subjt:  QSLPISAAAALNSGGWYRPVLVILTAAFAAEV

XP_022953817.1 classical arabinogalactan protein 26 [Cucurbita moschata]

1.4e-36

73.48

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Query:  IFSLYFPIFMAYSASL---ALASYPNYFPPSISSISAAPEFSPAPAP----DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLPPS
        IFSLY PIFMAY+AS+   + ASYPN+FPP ISSISAAPEFSP+P+P    DI+PLFPTPGGA LPP  SS PTIPSSPSPPNPDF  +APAPE+PLPPS
Subjt:  IFSLYFPIFMAYSASL---ALASYPNYFPPSISSISAAPEFSPAPAP----DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLPPS

Query:  QSLPISAAAALNSGGWYRPVLVILTAAFAAEV
        QSLP SAAA LNSGGW   + V LTAA  AEV
Subjt:  QSLPISAAAALNSGGWYRPVLVILTAAFAAEV

XP_022991733.1 classical arabinogalactan protein 26 [Cucurbita maxima]

6.9e-36

72.73

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Query:  IFSLYFPIFMAYSASL---ALASYPNYFPPSISSISAAPEFSPAPAP----DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLPPS
        IFSLY PIFMAY+AS+   + ASYPN+FPP ISSISAAPEFSP+P+P    DISPLFPTPGGA LPP  SS PTIPSSPSPPNPDF  + PAPE+PLPPS
Subjt:  IFSLYFPIFMAYSASL---ALASYPNYFPPSISSISAAPEFSPAPAP----DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLPPS

Query:  QSLPISAAAALNSGGWYRPVLVILTAAFAAEV
        QSLP SAAA LNSGGW   + V LTAA   EV
Subjt:  QSLPISAAAALNSGGWYRPVLVILTAAFAAEV

XP_023548939.1 classical arabinogalactan protein 26-like [Cucurbita pepo subsp. pepo]

1.8e-36

73.48

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Query:  IFSLYFPIFMAYSASL---ALASYPNYFPPSISSISAAPEFSPAPAP----DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLPPS
        IFSLY PIFMAY+AS+   + ASYPN+FPP ISSISAAPEFSP+P+P    DISPLFPTPGGA LPP  SS PTIPSSPSPPNPDF  +APAPE+PLPPS
Subjt:  IFSLYFPIFMAYSASL---ALASYPNYFPPSISSISAAPEFSPAPAP----DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLPPS

Query:  QSLPISAAAALNSGGWYRPVLVILTAAFAAEV
        QSLP SA A LNSGGW   + V LTAA  AEV
Subjt:  QSLPISAAAALNSGGWYRPVLVILTAAFAAEV

XP_038876736.1 classical arabinogalactan protein 26-like [Benincasa hispida]

1.1e-33

70.9

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Query:  IFSLYFPIFMAYSASL---ALASYPNYFPPSISSISAAPEFSPAPAP------DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLP
        IFSLY PIFMAY+AS+   +LASYPNY P  ISSISAAPEFSP P+P      DISPLFPTPGGA LPP  SS PTIPSSPSPPNPDF  +APAPE+ LP
Subjt:  IFSLYFPIFMAYSASL---ALASYPNYFPPSISSISAAPEFSPAPAP------DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLP

Query:  PSQSLPISAAAALNSGGWYRPVLVILTAAFAAEV
        PSQSLP SAA +LN  GW  PVLV LT A A E+
Subjt:  PSQSLPISAAAALNSGGWYRPVLVILTAAFAAEV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K510 Uncharacterized protein

2.9e-32

71.76

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Query:  IFSLYFPIFMAYSASL---ALASYPNYFPPS-ISSISAAPEFSPAPAP--DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLPPSQ
        IFSLY PIFMAY+AS+   + ASYPN FP   ISSISAAPEFSP+PAP  DISPLFPTPG A LPP  SS PTIPSSPSPPNPDF  +APAPE+PL PSQ
Subjt:  IFSLYFPIFMAYSASL---ALASYPNYFPPS-ISSISAAPEFSPAPAP--DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLPPSQ

Query:  SLPISAAAALNSGGWYRPVLVILTAAFAAEV
        SLP S AAALNSGGW   V V LT    AE+
Subjt:  SLPISAAAALNSGGWYRPVLVILTAAFAAEV

A0A1S3BRG9 classical arabinogalactan protein 26

1.2e-30

69.4

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Query:  IFSLYFPIFMAYSAS---LALASYPNYFPP----SISSISAAPEFSPAPAP--DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLP
        IFSLY PIFMAY+AS    A ASYPNYFP       SSISAAPEFSPAPAP  DISPLFPTPG A LPP  SS PTIPSSPSPPNPDF   APAPE+PL 
Subjt:  IFSLYFPIFMAYSAS---LALASYPNYFPP----SISSISAAPEFSPAPAP--DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLP

Query:  PSQSLPISAAAALNSGGWYRPVLVILTAAFAAEV
        P+ S+P SAAAALNS GW   V + L  A AAE+
Subjt:  PSQSLPISAAAALNSGGWYRPVLVILTAAFAAEV

A0A5A7UQZ3 Classical arabinogalactan protein 26

1.2e-30

69.4

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Query:  IFSLYFPIFMAYSAS---LALASYPNYFPP----SISSISAAPEFSPAPAP--DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLP
        IFSLY PIFMAY+AS    A ASYPNYFP       SSISAAPEFSPAPAP  DISPLFPTPG A LPP  SS PTIPSSPSPPNPDF   APAPE+PL 
Subjt:  IFSLYFPIFMAYSAS---LALASYPNYFPP----SISSISAAPEFSPAPAP--DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLP

Query:  PSQSLPISAAAALNSGGWYRPVLVILTAAFAAEV
        P+ S+P SAAAALNS GW   V + L  A AAE+
Subjt:  PSQSLPISAAAALNSGGWYRPVLVILTAAFAAEV

A0A6J1GPB2 classical arabinogalactan protein 26

6.7e-37

73.48

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Query:  IFSLYFPIFMAYSASL---ALASYPNYFPPSISSISAAPEFSPAPAP----DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLPPS
        IFSLY PIFMAY+AS+   + ASYPN+FPP ISSISAAPEFSP+P+P    DI+PLFPTPGGA LPP  SS PTIPSSPSPPNPDF  +APAPE+PLPPS
Subjt:  IFSLYFPIFMAYSASL---ALASYPNYFPPSISSISAAPEFSPAPAP----DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLPPS

Query:  QSLPISAAAALNSGGWYRPVLVILTAAFAAEV
        QSLP SAAA LNSGGW   + V LTAA  AEV
Subjt:  QSLPISAAAALNSGGWYRPVLVILTAAFAAEV

A0A6J1JX46 classical arabinogalactan protein 26

3.3e-36

72.73

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Query:  IFSLYFPIFMAYSASL---ALASYPNYFPPSISSISAAPEFSPAPAP----DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLPPS
        IFSLY PIFMAY+AS+   + ASYPN+FPP ISSISAAPEFSP+P+P    DISPLFPTPGGA LPP  SS PTIPSSPSPPNPDF  + PAPE+PLPPS
Subjt:  IFSLYFPIFMAYSASL---ALASYPNYFPPSISSISAAPEFSPAPAP----DISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLPPS

Query:  QSLPISAAAALNSGGWYRPVLVILTAAFAAEV
        QSLP SAAA LNSGGW   + V LTAA   EV
Subjt:  QSLPISAAAALNSGGWYRPVLVILTAAFAAEV

SwissProt top hits

e value

%identity

Alignment

Q94F57 Classical arabinogalactan protein 26

2.3e-05

40.74

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Query:  LASYPNYFPPSISSISAAPEFSPAPAPDISPLFPTPGGAALPPADSS---FPTIPSSPSPPNPDFSVSAPAPELPLPPSQSLPISAAAALNSGGWYRPVL
        +++ P++ P + SS SA+   +PA +PD SPLFPTPG + + P+ S     PTIPSS SPPNPD     P  E+  P    LP S++  L S      +L
Subjt:  LASYPNYFPPSISSISAAPEFSPAPAPDISPLFPTPGGAALPPADSS---FPTIPSSPSPPNPDFSVSAPAPELPLPPSQSLPISAAAALNSGGWYRPVL

Query:  VILTAAFA
        V+L    A
Subjt:  VILTAAFA

Arabidopsis top hits

e value

%identity

Alignment

AT2G47930.1 arabinogalactan protein 26

1.6e-06

40.74

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Query:  LASYPNYFPPSISSISAAPEFSPAPAPDISPLFPTPGGAALPPADSS---FPTIPSSPSPPNPDFSVSAPAPELPLPPSQSLPISAAAALNSGGWYRPVL
        +++ P++ P + SS SA+   +PA +PD SPLFPTPG + + P+ S     PTIPSS SPPNPD     P  E+  P    LP S++  L S      +L
Subjt:  LASYPNYFPPSISSISAAPEFSPAPAPDISPLFPTPGGAALPPADSS---FPTIPSSPSPPNPDFSVSAPAPELPLPPSQSLPISAAAALNSGGWYRPVL

Query:  VILTAAFA
        V+L    A
Subjt:  VILTAAFA

Sequences

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CDS sequence

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GCGTCTCCCATTTTCTCTCTCTACTTCCCCATTTTCATGGCCTACTCGGCTTCTCTCGCTCTCGCTTCTTATCCAAATTACTTCCCTCCTTCAATTTCTTCCATTTCCGC
CGCGCCGGAGTTTTCGCCGGCGCCGGCGCCGGACATTTCTCCGCTGTTTCCGACCCCCGGAGGCGCCGCACTTCCGCCGGCCGATTCCTCGTTTCCGACCATTCCGTCGA
GTCCCAGCCCGCCCAACCCGGATTTCTCGGTCTCGGCTCCGGCGCCGGAGCTGCCTCTTCCGCCGTCTCAGTCGTTGCCCATTTCCGCTGCTGCTGCTCTGAACTCCGGC
GGTTGGTACCGGCCGGTTTTGGTGATTCTTACGGCGGCTTTCGCGGCGGAGGTCGGTTGC

mRNA sequence

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Protein sequence

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ASPIFSLYFPIFMAYSASLALASYPNYFPPSISSISAAPEFSPAPAPDISPLFPTPGGAALPPADSSFPTIPSSPSPPNPDFSVSAPAPELPLPPSQSLPISAAAALNSG
GWYRPVLVILTAAFAAEVGC

MS013756 (gene) of Bitter gourd (TR) v1 genome