CuGenDBv2

Gene ID	MS013769
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	SOSS complex subunit B homolog
Genome location	scaffold263:825815..826006
RNA-Seq Expression	MS013769
Synteny	MS013769
Gene Ontology terms	GO:0000724 - double-strand break repair via homologous recombination (biological process) GO:0010212 - response to ionizing radiation (biological process) GO:0070876 - SOSS complex (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004135609.1 SOSS complex subunit B homolog [Cucumis sativus]

4.8e-22

72.15

Show/hide

Query:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD
        C SLVAD+TAAVHFQLWGDECDVVEPS+II LTN               GKR KIEKVGEF MVFVETPNMSE HWVPD
Subjt:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD

XP_008450623.1 PREDICTED: SOSS complex subunit B homolog [Cucumis melo]

4.8e-22

72.15

Show/hide

Query:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD
        C SLVAD+TAAVHFQLWGDECDVVEPS+II LTN               GKR KIEKVGEF MVFVETPNMSE HWVPD
Subjt:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD

XP_022150258.1 SOSS complex subunit B homolog [Momordica charantia]

3.7e-22

73.08

Show/hide

Query:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN--------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD
        CLSLVAD+TAAVHFQLWGDECD VEPS+II LTN              GKR KIEKVGEFNMVFVETPNMSE  WVPD
Subjt:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN--------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD

XP_022961520.1 SOSS complex subunit B homolog [Cucurbita moschata]

4.8e-22

70.89

Show/hide

Query:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD
        C SLVAD+TAAVHFQLWG+ECDVVEPS+I+ LTN               GKR KIEKVGEFNMVFVETPNMSE HWVPD
Subjt:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD

XP_038878334.1 SOSS complex subunit B homolog [Benincasa hispida]

4.8e-22

72.15

Show/hide

Query:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD
        C SLVAD+TAAVHFQLWGDECDVVEPS+II LTN               GKR KIEKVGEF MVFVETPNMSE HWVPD
Subjt:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LW03 Uncharacterized protein

2.3e-22

72.15

Show/hide

Query:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD
        C SLVAD+TAAVHFQLWGDECDVVEPS+II LTN               GKR KIEKVGEF MVFVETPNMSE HWVPD
Subjt:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD

A0A1S3BPN4 SOSS complex subunit B homolog

2.3e-22

72.15

Show/hide

Query:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD
        C SLVAD+TAAVHFQLWGDECDVVEPS+II LTN               GKR KIEKVGEF MVFVETPNMSE HWVPD
Subjt:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD

A0A5D3CIR3 SOSS complex subunit B-like protein

2.3e-22

72.15

Show/hide

Query:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD
        C SLVAD+TAAVHFQLWGDECDVVEPS+II LTN               GKR KIEKVGEF MVFVETPNMSE HWVPD
Subjt:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD

A0A6J1D803 SOSS complex subunit B homolog

1.8e-22

73.08

Show/hide

Query:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN--------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD
        CLSLVAD+TAAVHFQLWGDECD VEPS+II LTN              GKR KIEKVGEFNMVFVETPNMSE  WVPD
Subjt:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN--------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD

A0A6J1HAL0 SOSS complex subunit B homolog

2.3e-22

70.89

Show/hide

Query:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD
        C SLVAD+TAAVHFQLWG+ECDVVEPS+I+ LTN               GKR KIEKVGEFNMVFVETPNMSE HWVPD
Subjt:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD

SwissProt top hits

e value

%identity

Alignment

A6QLK2 SOSS complex subunit B1

1.1e-05

36.76

Show/hide

Query:  VADKTAAVHFQLWGDECDVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE
        VADKT +++  +W D  ++++P +II            CLT   G+   ++K+GEF MV+ E PN SE
Subjt:  VADKTAAVHFQLWGDECDVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE

Q3SWT1 SOSS complex subunit B1

1.1e-05

36.76

Show/hide

Query:  VADKTAAVHFQLWGDECDVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE
        VADKT +++  +W D  ++++P +II            CLT   G+   ++K+GEF MV+ E PN SE
Subjt:  VADKTAAVHFQLWGDECDVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE

Q54X41 SOSS complex subunit B homolog

1.1e-05

36.11

Show/hide

Query:  LVADKTAAVHFQLWGDECDVVEPSNIICLTN--------------GKRRKIEKVGEFNMVFVETPNMSETHW
        LVAD TA+++  +W    + ++P +I+ L                GK   IEK+GEF   FVE PN+S T W
Subjt:  LVADKTAAVHFQLWGDECDVVEPSNIICLTN--------------GKRRKIEKVGEFNMVFVETPNMSETHW

Q8R2Y9 SOSS complex subunit B1

1.1e-05

36.76

Show/hide

Query:  VADKTAAVHFQLWGDECDVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE
        VADKT +++  +W D  ++++P +II            CLT   G+   ++K+GEF MV+ E PN SE
Subjt:  VADKTAAVHFQLWGDECDVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE

Q9BQ15 SOSS complex subunit B1

1.1e-05

36.76

Show/hide

Query:  VADKTAAVHFQLWGDECDVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE
        VADKT +++  +W D  ++++P +II            CLT   G+   ++K+GEF MV+ E PN SE
Subjt:  VADKTAAVHFQLWGDECDVVEPSNII------------CLT--NGKRRKIEKVGEFNMVFVETPNMSE

Arabidopsis top hits

e value

%identity

Alignment

AT5G63690.1 Nucleic acid-binding, OB-fold-like protein

2.4e-19

53.16

Show/hide

Query:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD
        C++L AD+TAAVH QLWGDECD  E  +I+ LTN               GKR K+EK+GEF + FVETPN+SE  W+PD
Subjt:  CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTN---------------GKRRKIEKVGEFNMVFVETPNMSETHWVPD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TGCCTATCACTGGTGGCCGACAAAACGGCCGCAGTTCACTTCCAGCTATGGGGAGATGAGTGCGACGTGGTCGAGCCAAGCAATATTATCTGCTTGACGAACGGGAAGAG
AAGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGACCCATTGGGTTCCCGAC

mRNA sequence

Show/hide mRNA sequence

TGCCTATCACTGGTGGCCGACAAAACGGCCGCAGTTCACTTCCAGCTATGGGGAGATGAGTGCGACGTGGTCGAGCCAAGCAATATTATCTGCTTGACGAACGGGAAGAG
AAGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGACCCATTGGGTTCCCGAC

Protein sequence

Show/hide protein sequence

CLSLVADKTAAVHFQLWGDECDVVEPSNIICLTNGKRRKIEKVGEFNMVFVETPNMSETHWVPD

MS013769 (gene) of Bitter gourd (TR) v1 genome