; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013776 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013776
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSOSS complex subunit B homolog
Genome locationscaffold263:871415..871828
RNA-Seq ExpressionMS013776
SyntenyMS013776
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0010212 - response to ionizing radiation (biological process)
GO:0070876 - SOSS complex (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135609.1 SOSS complex subunit B homolog [Cucumis sativus]3.9e-6189.71Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF
        MI LKDLVPAAQN VN QFIVL+KG TT EGQNK C SLVADETAAVHFQLWGDECD VEPSDIIRLTNGIFSYSR NNLVLRAGKRGKIEKVGEF MVF
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP
        VETPNMSEI WVPDTI+S KYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP

XP_022150258.1 SOSS complex subunit B homolog [Momordica charantia]2.4e-71100Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV
        MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV

Query:  ETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPPNN
        ETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPPNN
Subjt:  ETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPPNN

XP_022961520.1 SOSS complex subunit B homolog [Cucurbita moschata]2.1e-6290.44Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRN-NLVLRAGKRGKIEKVGEFNMVF
        MISLKDLVPAAQNNVN QFIVL+KG TT EGQNK C SLVADETAAVHFQLWG+ECD VEPSDI+RLTNGIFSYSRN NLVLRAGKRGKIEKVGEFNMVF
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRN-NLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP
        VETPNMSEI WVPDT +SKKYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP

XP_023515959.1 SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]9.2e-6390.44Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF
        MISLKDLVPAAQNNVN QFIVLDKG TT EGQNK C SLVADETAAVHFQLWG+ECD VEPSDI+RLTNGIFSYSR NNLVLRAGKRGK+EKVGEFNMVF
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP
        VETPNMSEI WVPDT +SKKYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP

XP_038878334.1 SOSS complex subunit B homolog [Benincasa hispida]3.0e-6189.71Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF
        MI+LKDLVPAAQNNVN QFIVL+KG T  EGQNKAC SLVADETAAVHFQLWGDECD VEPSDIIRLTNGIFSYSR NNLVLRAGKRGKIEKVGEF MVF
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP
        VETPNMSEI WVPDT +S KYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP

TrEMBL top hitse value%identityAlignment
A0A0A0LW03 Uncharacterized protein1.9e-6189.71Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF
        MI LKDLVPAAQN VN QFIVL+KG TT EGQNK C SLVADETAAVHFQLWGDECD VEPSDIIRLTNGIFSYSR NNLVLRAGKRGKIEKVGEF MVF
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP
        VETPNMSEI WVPDTI+S KYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP

A0A1S3BPN4 SOSS complex subunit B homolog1.9e-6189.71Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF
        MI LKDLVPAAQN VN QFIVL+KG TT EGQNK C SLVADETAAVHFQLWGDECD VEPSDIIRLTNGIFSYSR NNLVLRAGKRGKIEKVGEF MVF
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP
        VETPNMSEI WVPDTI+S KYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP

A0A5D3CIR3 SOSS complex subunit B-like protein1.9e-6189.71Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF
        MI LKDLVPAAQN VN QFIVL+KG TT EGQNK C SLVADETAAVHFQLWGDECD VEPSDIIRLTNGIFSYSR NNLVLRAGKRGKIEKVGEF MVF
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP
        VETPNMSEI WVPDTI+S KYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP

A0A6J1D803 SOSS complex subunit B homolog1.2e-71100Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV
        MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV

Query:  ETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPPNN
        ETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPPNN
Subjt:  ETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPPNN

A0A6J1HAL0 SOSS complex subunit B homolog9.9e-6390.44Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRN-NLVLRAGKRGKIEKVGEFNMVF
        MISLKDLVPAAQNNVN QFIVL+KG TT EGQNK C SLVADETAAVHFQLWG+ECD VEPSDI+RLTNGIFSYSRN NLVLRAGKRGKIEKVGEFNMVF
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRN-NLVLRAGKRGKIEKVGEFNMVF

Query:  VETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP
        VETPNMSEI WVPDT +SKKYVKESVLSPYSRIFPP
Subjt:  VETPNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP

SwissProt top hitse value%identityAlignment
A6QLK2 SOSS complex subunit B16.3e-1439.05Show/hide
Query:  LKDLVPAAQNNVNAQFIVLDKGKTT-AEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFVET
        +KD+ P  + N+N  FIVL+ G+ T  +  ++     VAD+T +++  +W D  + ++P DIIRLT G  S  +  L L  G+ G ++K+GEF MV+ E 
Subjt:  LKDLVPAAQNNVNAQFIVLDKGKTT-AEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFVET

Query:  PNMSE
        PN SE
Subjt:  PNMSE

Q54X41 SOSS complex subunit B homolog4.4e-1539.09Show/hide
Query:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV
        +I + ++ P ++ N+N  FIVLDKG  T + +      LVAD TA+++  +W    + ++P DI+RL  G  +     L L  GK G IEK+GEF   FV
Subjt:  MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFV

Query:  ETPNMSEIRW
        E PN+S   W
Subjt:  ETPNMSEIRW

Q8R2Y9 SOSS complex subunit B16.3e-1439.05Show/hide
Query:  LKDLVPAAQNNVNAQFIVLDKGKTT-AEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFVET
        +KD+ P  + N+N  FIVL+ G+ T  +  ++     VAD+T +++  +W D  + ++P DIIRLT G  S  +  L L  G+ G ++K+GEF MV+ E 
Subjt:  LKDLVPAAQNNVNAQFIVLDKGKTT-AEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFVET

Query:  PNMSE
        PN SE
Subjt:  PNMSE

Q9BQ15 SOSS complex subunit B16.3e-1439.05Show/hide
Query:  LKDLVPAAQNNVNAQFIVLDKGKTT-AEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFVET
        +KD+ P  + N+N  FIVL+ G+ T  +  ++     VAD+T +++  +W D  + ++P DIIRLT G  S  +  L L  G+ G ++K+GEF MV+ E 
Subjt:  LKDLVPAAQNNVNAQFIVLDKGKTT-AEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFVET

Query:  PNMSE
        PN SE
Subjt:  PNMSE

Q9VM17 SOSS complex subunit B homolog7.4e-1540.37Show/hide
Query:  EMISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSL-VADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMV
        E I +KD+ P  + N+N  FIVL+ G  T   +N+   +  V D TA ++  +W +    + P DI+RLT G  S  R+ L L +GK G++ K+GE+ MV
Subjt:  EMISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSL-VADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMV

Query:  FVETPNMSE
        F E+ NMSE
Subjt:  FVETPNMSE

Arabidopsis top hitse value%identityAlignment
AT5G63690.1 Nucleic acid-binding, OB-fold-like protein1.4e-4864.66Show/hide
Query:  LKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNN-LVLRAGKRGKIEKVGEFNMVFVET
        LKD+VPAAQNN++ +FI+LDK K++A      C++L ADETAAVH QLWGDECDA E  DI++LTNGIFSY RN+ L+LRAGKRGK+EK+GEF + FVET
Subjt:  LKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNN-LVLRAGKRGKIEKVGEFNMVFVET

Query:  PNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP
        PN+SEI+W+PD  + K+Y++  V+S YSRIFPP
Subjt:  PNMSEIRWVPDTIDSKKYVKESVLSPYSRIFPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAAATGATCTCTCTCAAGGACTTGGTGCCAGCAGCCCAGAACAATGTGAATGCACAGTTCATAGTTTTGGACAAAGGGAAGACAACAGCAGAAGGCCAAAACAAGGCATG
CCTATCACTGGTGGCTGACGAAACGGCTGCTGTTCACTTCCAGCTATGGGGGGATGAGTGCGATGCAGTTGAGCCAAGCGATATTATCCGCTTGACGAATGGGATATTCT
CCTACAGCCGAAACAACCTGGTGCTGCGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATCCGC
TGGGTTCCCGACACGATCGACTCGAAGAAGTATGTGAAGGAATCTGTTCTATCTCCCTATTCTCGTATCTTTCCACCAAACAAT
mRNA sequenceShow/hide mRNA sequence
GAAATGATCTCTCTCAAGGACTTGGTGCCAGCAGCCCAGAACAATGTGAATGCACAGTTCATAGTTTTGGACAAAGGGAAGACAACAGCAGAAGGCCAAAACAAGGCATG
CCTATCACTGGTGGCTGACGAAACGGCTGCTGTTCACTTCCAGCTATGGGGGGATGAGTGCGATGCAGTTGAGCCAAGCGATATTATCCGCTTGACGAATGGGATATTCT
CCTACAGCCGAAACAACCTGGTGCTGCGGGCAGGGAAGAGAGGGAAGATAGAGAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATCCGC
TGGGTTCCCGACACGATCGACTCGAAGAAGTATGTGAAGGAATCTGTTCTATCTCCCTATTCTCGTATCTTTCCACCAAACAAT
Protein sequenceShow/hide protein sequence
EMISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVEPSDIIRLTNGIFSYSRNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIR
WVPDTIDSKKYVKESVLSPYSRIFPPNN