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MS013792 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013792
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold263:1092182..1092502
RNA-Seq ExpressionMS013792
SyntenyMS013792
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN70693.1 hypothetical protein VITISV_041975 [Vitis vinifera]2.3e-1341.12Show/hide
Query:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR
        D   W+L+    FT KS FL LS+ +  L   L K  WN   P KVK F+W +A++ +NT++ LQ +    ALSP  C LC+   ESTDH+FLH      
Subjt:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR

Query:  GWSFLLK
         W  L +
Subjt:  GWSFLLK

RVW15141.1 putative ribonuclease H protein [Vitis vinifera]3.0e-1337.38Show/hide
Query:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR
        D+  W+L+    FT KS FL LS+++        K +WN   P K+K F+W +A++ +NT++ LQ +    ALSP  C LC+  GE+ DH+FLH      
Subjt:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR

Query:  GWSFLLK
         W  L +
Subjt:  GWSFLLK

RVW98459.1 hypothetical protein CK203_026896 [Vitis vinifera]1.4e-1337.38Show/hide
Query:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR
        D+  W+L+  + FT KS FL LS+++        K +WN   P K+K F+W +A++ +NT++ LQ +    ALSP  C LC+  GE+ DH+FLH      
Subjt:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR

Query:  GWSFLLK
         W  L +
Subjt:  GWSFLLK

TYK07901.1 DUF21 domain-containing protein [Cucumis melo var. makuwa]1.6e-2248.6Show/hide
Query:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR
        D ++W LN    FT KS+FLKL++ +P + APLI  IW     K+VK FLWS+AYRS+NTH+ +QK  Q+  LSPS C LC    E+ DH+FLH  F  +
Subjt:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR

Query:  GWSFLLK
         W+ L +
Subjt:  GWSFLLK

TYK31299.1 protein FAM91A1 [Cucumis melo var. makuwa]2.0e-1744.66Show/hide
Query:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR
        D + W L     F+TK  F K++    K     +  IW     KKVK FLWS+AYRS+N    LQ+K  N +LSPS C LCL   E+ DH+FLH  FA +
Subjt:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR

Query:  GWS
        GW+
Subjt:  GWS

TrEMBL top hitse value%identityAlignment
A0A438IP26 zf-RVT domain-containing protein6.6e-1437.38Show/hide
Query:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR
        D+  W+L+  + FT KS FL LS+++        K +WN   P K+K F+W +A++ +NT++ LQ +    ALSP  C LC+  GE+ DH+FLH      
Subjt:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR

Query:  GWSFLLK
         W  L +
Subjt:  GWSFLLK

A0A5D3C7R2 DUF21 domain-containing protein7.8e-2348.6Show/hide
Query:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR
        D ++W LN    FT KS+FLKL++ +P + APLI  IW     K+VK FLWS+AYRS+NTH+ +QK  Q+  LSPS C LC    E+ DH+FLH  F  +
Subjt:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR

Query:  GWSFLLK
         W+ L +
Subjt:  GWSFLLK

A0A5D3E632 Protein FAM91A19.9e-1844.66Show/hide
Query:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR
        D + W L     F+TK  F K++    K     +  IW     KKVK FLWS+AYRS+N    LQ+K  N +LSPS C LCL   E+ DH+FLH  FA +
Subjt:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR

Query:  GWS
        GW+
Subjt:  GWS

A5BQD9 Reverse transcriptase domain-containing protein1.5e-1337.38Show/hide
Query:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR
        D+  W+L+    FT KS FL LS+++        K +WN   P K+K F+W +A++ +NT++ LQ +    ALSP  C LC+  GE+ DH+FLH      
Subjt:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR

Query:  GWSFLLK
         W  L +
Subjt:  GWSFLLK

A5BY18 Reverse transcriptase domain-containing protein1.1e-1341.12Show/hide
Query:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR
        D   W+L+    FT KS FL LS+ +  L   L K  WN   P KVK F+W +A++ +NT++ LQ +    ALSP  C LC+   ESTDH+FLH      
Subjt:  DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATR

Query:  GWSFLLK
         W  L +
Subjt:  GWSFLLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GACGAGGTGGAATGGGCTTTGAATGGTGAGAAGAGATTTACTACCAAGTCTTCCTTTTTGAAATTATCTGAAGTTACTCCTAAGCTTAAAGCTCCTCTCATTAAAAAGAT
TTGGAACTTTAATTGCCCAAAGAAAGTGAAGGTGTTCCTGTGGAGCATGGCCTATAGAAGCATCAACACCCACGAAAACCTACAGAAAAAACTGCAGAACTGGGCTTTAT
CCCCCTCGGCATGCCCGCTTTGTCTTAGTAGTGGAGAATCAACGGACCACATTTTCCTTCATTACCAGTTTGCAACAAGAGGATGGTCCTTTTTATTGAAG
mRNA sequenceShow/hide mRNA sequence
GACGAGGTGGAATGGGCTTTGAATGGTGAGAAGAGATTTACTACCAAGTCTTCCTTTTTGAAATTATCTGAAGTTACTCCTAAGCTTAAAGCTCCTCTCATTAAAAAGAT
TTGGAACTTTAATTGCCCAAAGAAAGTGAAGGTGTTCCTGTGGAGCATGGCCTATAGAAGCATCAACACCCACGAAAACCTACAGAAAAAACTGCAGAACTGGGCTTTAT
CCCCCTCGGCATGCCCGCTTTGTCTTAGTAGTGGAGAATCAACGGACCACATTTTCCTTCATTACCAGTTTGCAACAAGAGGATGGTCCTTTTTATTGAAG
Protein sequenceShow/hide protein sequence
DEVEWALNGEKRFTTKSSFLKLSEVTPKLKAPLIKKIWNFNCPKKVKVFLWSMAYRSINTHENLQKKLQNWALSPSACPLCLSSGESTDHIFLHYQFATRGWSFLLK