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MS013794 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013794
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsyntaxin-41-like
Genome locationscaffold263:1107858..1109011
RNA-Seq ExpressionMS013794
SyntenyMS013794
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006906 - vesicle fusion (biological process)
GO:0048278 - vesicle docking (biological process)
GO:0012505 - endomembrane system (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031201 - SNARE complex (cellular component)
GO:0000149 - SNARE binding (molecular function)
GO:0005484 - SNAP receptor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599198.1 Syntaxin-43, partial [Cucurbita argyrosperma subsp. sororia]3.4e-3982.61Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM
        MASRN+TL+FRKYR ALRSV VPT SSP SASP TSS  GGPVIELVSSSLL+PNR+YAPLSTEDP NSS  A T+GLP AWVDVS+EIAANVQR R KM
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM

Query:  MELAKAHAKALMPSF
        MELAKAHAKALMPSF
Subjt:  MELAKAHAKALMPSF

KAG7030133.1 Syntaxin-43, partial [Cucurbita argyrosperma subsp. argyrosperma]3.4e-3982.61Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM
        MASRN+TL+FRKYR ALRSV VPT SSP SASP TSS  GGPVIELVSSSLL+PNR+YAPLSTEDP NSS  A T+GLP AWVDVS+EIAANVQR R KM
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM

Query:  MELAKAHAKALMPSF
        MELAKAHAKALMPSF
Subjt:  MELAKAHAKALMPSF

XP_022156434.1 syntaxin-41-like [Momordica charantia]9.6e-4286.09Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM
        MASRN+TLLFRKYR ALRSV  PTSSSPVSASP TSS AGGPVIELVSSSLL+PNRTYAPLSTEDP NSS  AHT+GLP AWVDVS+EIAANVQR R+KM
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM

Query:  MELAKAHAKALMPSF
         ELAKAHAKALMPSF
Subjt:  MELAKAHAKALMPSF

XP_022999413.1 syntaxin-43-like [Cucurbita maxima]3.4e-3982.61Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM
        MASRN+TL+FRKYR ALRSV VPT SSP SASP TSS  GGPVIELVSSSLL+PNR+YAPLSTEDP NSS  A T+GLP AWVDVS+EIAANVQR R KM
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM

Query:  MELAKAHAKALMPSF
        MELAKAHAKALMPSF
Subjt:  MELAKAHAKALMPSF

XP_023522691.1 syntaxin-41-like, partial [Cucurbita pepo subsp. pepo]3.4e-3982.61Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM
        MASRN+TL+FRKYR ALRSV VPT SSP SASP TSS  GGPVIELVSSSLL+PNR+YAPLSTEDP NSS  A T+GLP AWVDVS+EIAANVQR R KM
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM

Query:  MELAKAHAKALMPSF
        MELAKAHAKALMPSF
Subjt:  MELAKAHAKALMPSF

TrEMBL top hitse value%identityAlignment
A0A1S3BWR8 syntaxin-432.2e-3983.48Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM
        MASRN+TLLF+KYR ALRSV VPTSSS  SASP TSS+AGGPVIELVSSSLL+PNR+YAPLSTEDP NSS  A T+GLP AWVDVS+EIAANVQR R KM
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM

Query:  MELAKAHAKALMPSF
        MELAKAHAKALMPSF
Subjt:  MELAKAHAKALMPSF

A0A5A7U3M4 Syntaxin-432.2e-3983.48Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM
        MASRN+TLLF+KYR ALRSV VPTSSS  SASP TSS+AGGPVIELVSSSLL+PNR+YAPLSTEDP NSS  A T+GLP AWVDVS+EIAANVQR R KM
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM

Query:  MELAKAHAKALMPSF
        MELAKAHAKALMPSF
Subjt:  MELAKAHAKALMPSF

A0A6J1DTG3 syntaxin-41-like4.6e-4286.09Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM
        MASRN+TLLFRKYR ALRSV  PTSSSPVSASP TSS AGGPVIELVSSSLL+PNRTYAPLSTEDP NSS  AHT+GLP AWVDVS+EIAANVQR R+KM
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM

Query:  MELAKAHAKALMPSF
         ELAKAHAKALMPSF
Subjt:  MELAKAHAKALMPSF

A0A6J1G576 syntaxin-43-like1.6e-3982.61Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM
        MASRN+TL+FRKYR ALRSV VPT SSP SASP TSS  GGPVIELVSSSLL+PNR+YAPLSTEDP NSS  A T+GLP AWVDVS+EIAANVQR R KM
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM

Query:  MELAKAHAKALMPSF
        MELAKAHAKALMPSF
Subjt:  MELAKAHAKALMPSF

A0A6J1KJM9 syntaxin-43-like1.6e-3982.61Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM
        MASRN+TL+FRKYR ALRSV VPT SSP SASP TSS  GGPVIELVSSSLL+PNR+YAPLSTEDP NSS  A T+GLP AWVDVS+EIAANVQR R KM
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM

Query:  MELAKAHAKALMPSF
        MELAKAHAKALMPSF
Subjt:  MELAKAHAKALMPSF

SwissProt top hitse value%identityAlignment
O65359 Syntaxin-413.2e-3266.96Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM
        MA+RN+TLLFRKYR++LRSV  P SSS ++    T S   GPVIE+ S+SLLNPNR+YAP+STEDP  SS  A T+GLP AWVDVS+EI+ N+QR R+KM
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM

Query:  MELAKAHAKALMPSF
         EL KAHAKALMPSF
Subjt:  MELAKAHAKALMPSF

Q9SUJ1 Syntaxin-431.5e-2962.5Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAG-----GPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQR
        MA+RN+TLLFRKYR++LRSV  P  SS  S     +S  G     GPVIE+ S+SLLNPNR+YAP+STEDP NSS    T+GLP  WVDVS+EI+  +QR
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAG-----GPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQR

Query:  VRSKMMELAKAHAKALMPSF
         R+KM EL KAHAKALMPSF
Subjt:  VRSKMMELAKAHAKALMPSF

Q9SWH4 Syntaxin-422.5e-2152.59Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNR-TYAPLSTED--PANSSAHTMGLPLAWVDVSKEIAANVQRVRSK
        MA+RN+T ++RK+R A +S   P S S        S S GGPVIE+VS S    N  +YAPL++ D  P++S A T+G+P AWVD S+EI  N+Q+VR K
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNR-TYAPLSTED--PANSSAHTMGLPLAWVDVSKEIAANVQRVRSK

Query:  MMELAKAHAKALMPSF
        M ELAKAH+KALMP+F
Subjt:  MMELAKAHAKALMPSF

Arabidopsis top hitse value%identityAlignment
AT3G05710.1 syntaxin of plants 432.4e-3062.18Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAG-----GPVIELVSSSLLNPNRTYAPLSTEDPANS-SAHTMGLPLAWVDVSKEIAANVQRV
        MA+RN+TLLFRKYR++LRSV  P  SS  S     +S  G     GPVIE+ S+SLLNPNR+YAP+STEDP NS    T+GLP  WVDVS+EI+  +QR 
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAG-----GPVIELVSSSLLNPNRTYAPLSTEDPANS-SAHTMGLPLAWVDVSKEIAANVQRV

Query:  RSKMMELAKAHAKALMPSF
        R+KM EL KAHAKALMPSF
Subjt:  RSKMMELAKAHAKALMPSF

AT3G05710.2 syntaxin of plants 431.1e-3062.5Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAG-----GPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQR
        MA+RN+TLLFRKYR++LRSV  P  SS  S     +S  G     GPVIE+ S+SLLNPNR+YAP+STEDP NSS    T+GLP  WVDVS+EI+  +QR
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAG-----GPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQR

Query:  VRSKMMELAKAHAKALMPSF
         R+KM EL KAHAKALMPSF
Subjt:  VRSKMMELAKAHAKALMPSF

AT4G02195.1 syntaxin of plants 421.8e-2252.59Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNR-TYAPLSTED--PANSSAHTMGLPLAWVDVSKEIAANVQRVRSK
        MA+RN+T ++RK+R A +S   P S S        S S GGPVIE+VS S    N  +YAPL++ D  P++S A T+G+P AWVD S+EI  N+Q+VR K
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNR-TYAPLSTED--PANSSAHTMGLPLAWVDVSKEIAANVQRVRSK

Query:  MMELAKAHAKALMPSF
        M ELAKAH+KALMP+F
Subjt:  MMELAKAHAKALMPSF

AT5G26980.1 syntaxin of plants 412.3e-3366.96Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM
        MA+RN+TLLFRKYR++LRSV  P SSS ++    T S   GPVIE+ S+SLLNPNR+YAP+STEDP  SS  A T+GLP AWVDVS+EI+ N+QR R+KM
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM

Query:  MELAKAHAKALMPSF
         EL KAHAKALMPSF
Subjt:  MELAKAHAKALMPSF

AT5G26980.2 syntaxin of plants 412.3e-3366.96Show/hide
Query:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM
        MA+RN+TLLFRKYR++LRSV  P SSS ++    T S   GPVIE+ S+SLLNPNR+YAP+STEDP  SS  A T+GLP AWVDVS+EI+ N+QR R+KM
Subjt:  MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSS--AHTMGLPLAWVDVSKEIAANVQRVRSKM

Query:  MELAKAHAKALMPSF
         EL KAHAKALMPSF
Subjt:  MELAKAHAKALMPSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGAGGAATCAGACTTTGCTTTTTAGGAAATACAGGCACGCCTTGAGAAGTGTGATGGTTCCTACCAGCTCTTCGCCAGTTTCGGCATCGCCACCGACTAGTTC
TAGCGCTGGTGGTCCGGTGATTGAATTGGTGAGCTCGTCGTTGTTGAATCCGAATCGGACTTATGCTCCCTTGAGTACTGAGGATCCGGCTAATTCAAGTGCCCATACCA
TGGGTCTGCCTCTGGCTTGGGTCGATGTATCCAAAGAAATAGCTGCAAATGTGCAACGTGTACGATCAAAGATGATGGAGTTAGCTAAAGCTCATGCGAAGGCTTTAATG
CCTTCATTT
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGAGGAATCAGACTTTGCTTTTTAGGAAATACAGGCACGCCTTGAGAAGTGTGATGGTTCCTACCAGCTCTTCGCCAGTTTCGGCATCGCCACCGACTAGTTC
TAGCGCTGGTGGTCCGGTGATTGAATTGGTGAGCTCGTCGTTGTTGAATCCGAATCGGACTTATGCTCCCTTGAGTACTGAGGATCCGGCTAATTCAAGTGCCCATACCA
TGGGTCTGCCTCTGGCTTGGGTCGATGTATCCAAAGAAATAGCTGCAAATGTGCAACGTGTACGATCAAAGATGATGGAGTTAGCTAAAGCTCATGCGAAGGCTTTAATG
CCTTCATTT
Protein sequenceShow/hide protein sequence
MASRNQTLLFRKYRHALRSVMVPTSSSPVSASPPTSSSAGGPVIELVSSSLLNPNRTYAPLSTEDPANSSAHTMGLPLAWVDVSKEIAANVQRVRSKMMELAKAHAKALM
PSF