; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013799 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013799
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionexosome complex component RRP43
Genome locationscaffold541:37262..43680
RNA-Seq ExpressionMS013799
SyntenyMS013799
Gene Ontology termsGO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0034473 - U1 snRNA 3'-end processing (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0034476 - U5 snRNA 3'-end processing (biological process)
GO:0043928 - exonucleolytic catabolism of deadenylated mRNA (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process (biological process)
GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process (biological process)
GO:0071042 - nuclear polyadenylation-dependent mRNA catabolic process (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7033523.1 Exosome complex component RRP43 [Cucurbita argyrosperma subsp. argyrosperma]3.1e-15694.41Show/hide
Query:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM
        MGLPNAASGDLSSEMEVDAFRRLFP+QF+ERH AESIRPDGRALGKARDTTIALGPVSSANGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIA+DFHM
Subjt:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM

Query:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG
        PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG
Subjt:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG

Query:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG
        ENFEKE VNKE+RKLKL+S+PFSLTC+LHKN+ILADPTAEEES+METIVTVVLD  GQLVSFYKPGGSVLA+TSAVQDCVALTRQR KELQ+ILDEAISG
Subjt:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG

Query:  MEID
        MEID
Subjt:  MEID

XP_008460772.1 PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo]1.4e-15693.75Show/hide
Query:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM
        MGLPNAASGDLSS+MEVDAFRRLFP+QFYERH AESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHM
Subjt:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM

Query:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG
        PP+CSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDG+VVFVSEEEGG
Subjt:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG

Query:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG
        ENFEKEPVNKEKRKLKL+S+PFSLTC+LHK +ILADPTAEEES+METIVTVVLD  GQLVSFYKPGGSVLA+TSAVQDC+ALTRQR KELQ+ILDEAISG
Subjt:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG

Query:  MEID
        MEID
Subjt:  MEID

XP_008460773.1 PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo]1.4e-15693.75Show/hide
Query:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM
        MGLPNAASGDLSS+MEVDAFRRLFP+QFYERH AESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHM
Subjt:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM

Query:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG
        PP+CSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDG+VVFVSEEEGG
Subjt:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG

Query:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG
        ENFEKEPVNKEKRKLKL+S+PFSLTC+LHK +ILADPTAEEES+METIVTVVLD  GQLVSFYKPGGSVLA+TSAVQDC+ALTRQR KELQ+ILDEAISG
Subjt:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG

Query:  MEID
        MEID
Subjt:  MEID

XP_022152237.1 exosome complex component RRP43 [Momordica charantia]7.7e-16399.67Show/hide
Query:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM
        MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM
Subjt:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM

Query:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG
        PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG
Subjt:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG

Query:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG
        ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDL GQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG
Subjt:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG

Query:  MEID
        MEID
Subjt:  MEID

XP_023544252.1 exosome complex component RRP43 [Cucurbita pepo subsp. pepo]1.4e-15694.74Show/hide
Query:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM
        MGLPNAASGDLSSEMEVDAFRRLFP+QF+ERH AESIRPDGRALGKARDTTIALGPVSSANGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIA+DFHM
Subjt:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM

Query:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG
        PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG
Subjt:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG

Query:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG
        ENFEKE VNKEKRKLKL+S+PFSLTC+LHKN+ILADPTAEEES+METIVTVVLD  GQLVSFYKPGGSVLA+TSAVQDCVALTRQR KELQ+ILDEAISG
Subjt:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG

Query:  MEID
        MEID
Subjt:  MEID

TrEMBL top hitse value%identityAlignment
A0A1S3CD66 exosome complex component RRP43 isoform X16.8e-15793.75Show/hide
Query:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM
        MGLPNAASGDLSS+MEVDAFRRLFP+QFYERH AESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHM
Subjt:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM

Query:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG
        PP+CSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDG+VVFVSEEEGG
Subjt:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG

Query:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG
        ENFEKEPVNKEKRKLKL+S+PFSLTC+LHK +ILADPTAEEES+METIVTVVLD  GQLVSFYKPGGSVLA+TSAVQDC+ALTRQR KELQ+ILDEAISG
Subjt:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG

Query:  MEID
        MEID
Subjt:  MEID

A0A1S3CEE1 exosome complex component RRP43 isoform X26.8e-15793.75Show/hide
Query:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM
        MGLPNAASGDLSS+MEVDAFRRLFP+QFYERH AESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPS+ESPDEGCIA+DFHM
Subjt:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM

Query:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG
        PP+CSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDG+VVFVSEEEGG
Subjt:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG

Query:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG
        ENFEKEPVNKEKRKLKL+S+PFSLTC+LHK +ILADPTAEEES+METIVTVVLD  GQLVSFYKPGGSVLA+TSAVQDC+ALTRQR KELQ+ILDEAISG
Subjt:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG

Query:  MEID
        MEID
Subjt:  MEID

A0A6J1DFM7 exosome complex component RRP433.7e-16399.67Show/hide
Query:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM
        MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM
Subjt:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM

Query:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG
        PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG
Subjt:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG

Query:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG
        ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDL GQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG
Subjt:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG

Query:  MEID
        MEID
Subjt:  MEID

A0A6J1ESF5 exosome complex component RRP432.6e-15694.41Show/hide
Query:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM
        MGLPNAASGDLSSEMEVDAFRRLFP+QF+ERH AESIRPDGRALGKARDTTIALGPVSSANGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIA+DFHM
Subjt:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM

Query:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG
        PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIP VALNDDGKVVFVSEEEGG
Subjt:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG

Query:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG
        ENFEKE VNKEKRKLKL+S+PFSLTC+LHKN+ILADPTAEEES+METIVTVVLD  GQLVSFYKPGGSVLA+TSAVQDCVALTRQR KELQ+ILDEAISG
Subjt:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG

Query:  MEID
        MEID
Subjt:  MEID

A0A6J1HVL5 exosome complex component RRP431.7e-15594.08Show/hide
Query:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM
        MGLPNAASGDLSSEMEVDAFRRLFP+QF+ERH AESIRPDGRALGKARDTTIALGPVSSANGSALAK+GSTTMLAAIKMEVMTPSIESPDEGCIA+DFHM
Subjt:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM

Query:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG
        P ICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEE+GG
Subjt:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG

Query:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG
        ENFEKE VNKEKRKLKL+S+PFSLTC+LHKN+ILADPTAEEES+METIVTVVLD  GQLVSFYKPGGSVLA+TSAVQDCVALTRQR KELQ+ILDEAISG
Subjt:  ENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISG

Query:  MEID
        MEID
Subjt:  MEID

SwissProt top hitse value%identityAlignment
Q10205 Exosome complex component rrp431.5e-3129.96Show/hide
Query:  FRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPV
        F+++ P Q+      + +R DGR++ + R+  I    +S+ANGSA+ + G    +  IK E+  P   SP+EG I  +  + P+CS   +PG P++ A V
Subjt:  FRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPV

Query:  ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSS
        +S++L  T+  S +I+L+ L + + KAAW+ Y DI CL+ DGS FD A  +  AA   +++P    ++D + V  +             +   R ++LS+
Subjt:  ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSS

Query:  IPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQR
           S +  +  + +LADPT EEE +    +T++L+    +V   K GG+ +     ++ C+ + R +
Subjt:  IPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQR

Q2KHU3 Exosome complex component RRP431.3e-4334.51Show/hide
Query:  FRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPV
        F+ + PL++Y R   E+ RPDGR LG+ R TT+ +G + +A+GSAL K+G+TT++  IK E   P  ++PD+G +  +  + P+CS   R G P E A V
Subjt:  FRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPV

Query:  ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSS
         S+ ++D I +S +I   +L +  GK AW+ Y D+ CL+ DG++ DA   +  AA  ++Q+P V +N++  +  V+              K+K  L + +
Subjt:  ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSS

Query:  IPFSLT-CILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGME
         P + +  +     ++ DPT EEE +    +TVV+D  G+L   +KPGGS L   + +QDC++    R KE++ ++DE    M+
Subjt:  IPFSLT-CILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGME

Q8TYC2 Exosome complex component Rrp425.6e-3131.76Show/hide
Query:  RPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLR
        R DGR   + R   +  G +S ANGSAL ++G+T ++  +K+EV  P  +SP+EG +A++  + P+  P   PG P E A  +S+ +   I  S MIDL 
Subjt:  RPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLR

Query:  ELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADP
        EL + +G+  W+ ++DI+ LD DG+LFDA+++ + +A S  ++P   + DD               E E + ++   L ++  P S+T      ++L DP
Subjt:  ELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADP

Query:  TAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTS-AVQDCVALTRQRVKELQ
          EEE IM+T +TV +   G++ +  K  G +  F    ++D + L  ++ +E++
Subjt:  TAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTS-AVQDCVALTRQRVKELQ

Q96B26 Exosome complex component RRP432.1e-4635.21Show/hide
Query:  FRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPV
        F+ + PL++Y R   E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K E   PS ++PD+G +  +  +PP+CS   R G P E A V
Subjt:  FRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPV

Query:  ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSS
         S+ ++D I +S +I   +L +  GK  W+ Y D+ CLD DG++ DA   +  AA  ++Q+P V +N++  +  V+              K+K  L + +
Subjt:  ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSS

Query:  IPFSLT-CILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGME
         P + +  +     ++ DPT EEE +    +T+V+D  G+L   +KPGGS L   + +QDC++    R KE++ ++DE I  M+
Subjt:  IPFSLT-CILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGME

Q9D753 Exosome complex component RRP438.0e-4635.69Show/hide
Query:  FRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPV
        F+ + PL++Y R   E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K E   P +++PD G +  +  +PP+CS   R G P E A V
Subjt:  FRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPV

Query:  ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSS
         S+ ++D + +S +I   +L +  GK AW+ Y D+ CLD DG++ DA   +  AA  ++Q+P V +N++  +  V+              K+K  L + +
Subjt:  ISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSS

Query:  IPFSLT-CILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGM
         P + +  +     ++ DPT EEE +    +TVV D  G+L   +KPGGS L   + +QDC++    R KE+  +LDE I  M
Subjt:  IPFSLT-CILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGM

Arabidopsis top hitse value%identityAlignment
AT1G60080.1 3'-5'-exoribonuclease family protein1.4e-12273.94Show/hide
Query:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM
        MG+P+AA  DLS+EMEVDAFRR+FPL+F+ERH +ES+RPDGR LGKARDT + LG VS+A+GSALAKIGSTTMLAAI+MEVMTPS +SPDEGCIAI+FHM
Subjt:  MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHM

Query:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG
        PPICSP VRPGRPAEAAPVISK+LSDTI SSGMIDL+EL LV GKAAWM YLDIYCLDADG+LFDAALL+A AAFS+LQIP+VALND+G++V V+ E+  
Subjt:  PPICSPIVRPGRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGG

Query:  EN---FEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEA
        +N    EKE VNKEKRKL L +IPFSLTCILHKN+ILADPT EEESIM+T+VTVVLD   Q+VSFYK GG+ LA++SA++ CV L R+R KEL+ IL E 
Subjt:  EN---FEKEPVNKEKRKLKLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEA

Query:  ISGMEID
           M+ID
Subjt:  ISGMEID

AT3G07750.1 3'-5'-exoribonuclease family protein7.5e-2330.31Show/hide
Query:  LQFYERHF-----AESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIV--RPGR--PAEA
        L   E+HF     A+ +R DGR     R   +  G +  ANGSA  +IG T ++A++K E+  PS   PD+G +A+     P   P    R G    +E 
Subjt:  LQFYERHF-----AESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIV--RPGR--PAEA

Query:  APVISKQLSDTISSSGM-IDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKL
        A  + + L    S +G  I+L  L + +GK  W  Y+D   + +DG+L DA   +  AA ++  IP        KV   +E    E  E +  ++E  + 
Subjt:  APVISKQLSDTISSSGM-IDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKL

Query:  KLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGME
          SS+P  +T      H + D TAEEES M + V++ ++  G +    K  GS L   S + D +++ +   + L   LD  IS  E
Subjt:  KLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGME

AT3G07750.2 3'-5'-exoribonuclease family protein7.5e-2330.31Show/hide
Query:  LQFYERHF-----AESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIV--RPGR--PAEA
        L   E+HF     A+ +R DGR     R   +  G +  ANGSA  +IG T ++A++K E+  PS   PD+G +A+     P   P    R G    +E 
Subjt:  LQFYERHF-----AESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIV--RPGR--PAEA

Query:  APVISKQLSDTISSSGM-IDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKL
        A  + + L    S +G  I+L  L + +GK  W  Y+D   + +DG+L DA   +  AA ++  IP        KV   +E    E  E +  ++E  + 
Subjt:  APVISKQLSDTISSSGM-IDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKL

Query:  KLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGME
          SS+P  +T      H + D TAEEES M + V++ ++  G +    K  GS L   S + D +++ +   + L   LD  IS  E
Subjt:  KLSSIPFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGME


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTGCCGAATGCTGCTTCTGGGGATTTGTCGTCGGAGATGGAGGTTGATGCTTTTAGACGACTCTTCCCACTTCAGTTTTATGAGCGTCATTTCGCTGAATCGAT
ACGTCCTGATGGAAGAGCACTGGGGAAAGCTAGAGATACAACCATTGCTCTTGGGCCGGTATCATCTGCAAATGGTTCTGCCCTGGCTAAGATTGGTTCTACGACAATGT
TGGCTGCTATTAAAATGGAAGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGCATAGCTATTGATTTCCATATGCCCCCAATATGCTCTCCGATTGTTAGGCCT
GGGAGACCAGCTGAAGCCGCACCTGTGATTTCAAAGCAGTTATCTGACACCATTTCAAGTTCTGGGATGATTGATCTGAGAGAATTATCTCTTGTTAAAGGAAAAGCTGC
TTGGATGGCATACCTGGATATTTATTGTTTGGATGCCGATGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCATTTGCAAATCCCTGTTGTTG
CTCTAAATGATGATGGGAAAGTAGTATTTGTCTCCGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAGCCTGTCAACAAAGAGAAAAGGAAACTGAAATTGAGCTCTATT
CCTTTCTCATTAACATGCATACTCCACAAGAACCACATCTTGGCAGACCCTACTGCAGAGGAGGAGTCCATCATGGAAACTATTGTGACCGTGGTTTTAGATTTGTTGGG
TCAACTCGTATCCTTCTACAAGCCGGGTGGATCCGTTCTTGCCTTTACATCTGCTGTTCAGGATTGCGTTGCACTGACGAGACAGAGAGTGAAGGAACTTCAAGTGATTT
TAGACGAAGCGATTTCTGGTATGGAAATTGAC
mRNA sequenceShow/hide mRNA sequence
ATGGGATTGCCGAATGCTGCTTCTGGGGATTTGTCGTCGGAGATGGAGGTTGATGCTTTTAGACGACTCTTCCCACTTCAGTTTTATGAGCGTCATTTCGCTGAATCGAT
ACGTCCTGATGGAAGAGCACTGGGGAAAGCTAGAGATACAACCATTGCTCTTGGGCCGGTATCATCTGCAAATGGTTCTGCCCTGGCTAAGATTGGTTCTACGACAATGT
TGGCTGCTATTAAAATGGAAGTAATGACGCCTTCCATAGAGTCACCGGATGAGGGTTGCATAGCTATTGATTTCCATATGCCCCCAATATGCTCTCCGATTGTTAGGCCT
GGGAGACCAGCTGAAGCCGCACCTGTGATTTCAAAGCAGTTATCTGACACCATTTCAAGTTCTGGGATGATTGATCTGAGAGAATTATCTCTTGTTAAAGGAAAAGCTGC
TTGGATGGCATACCTGGATATTTATTGTTTGGATGCCGATGGATCTCTTTTTGATGCTGCACTTCTTTCTGCAGCTGCTGCATTTTCTCATTTGCAAATCCCTGTTGTTG
CTCTAAATGATGATGGGAAAGTAGTATTTGTCTCCGAGGAAGAAGGGGGAGAAAACTTTGAGAAGGAGCCTGTCAACAAAGAGAAAAGGAAACTGAAATTGAGCTCTATT
CCTTTCTCATTAACATGCATACTCCACAAGAACCACATCTTGGCAGACCCTACTGCAGAGGAGGAGTCCATCATGGAAACTATTGTGACCGTGGTTTTAGATTTGTTGGG
TCAACTCGTATCCTTCTACAAGCCGGGTGGATCCGTTCTTGCCTTTACATCTGCTGTTCAGGATTGCGTTGCACTGACGAGACAGAGAGTGAAGGAACTTCAAGTGATTT
TAGACGAAGCGATTTCTGGTATGGAAATTGAC
Protein sequenceShow/hide protein sequence
MGLPNAASGDLSSEMEVDAFRRLFPLQFYERHFAESIRPDGRALGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSIESPDEGCIAIDFHMPPICSPIVRP
GRPAEAAPVISKQLSDTISSSGMIDLRELSLVKGKAAWMAYLDIYCLDADGSLFDAALLSAAAAFSHLQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLSSI
PFSLTCILHKNHILADPTAEEESIMETIVTVVLDLLGQLVSFYKPGGSVLAFTSAVQDCVALTRQRVKELQVILDEAISGMEID