; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013858 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013858
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionhigh mobility group B protein 6
Genome locationscaffold607:315566..316334
RNA-Seq ExpressionMS013858
SyntenyMS013858
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025412.1 high mobility group B protein 6 [Cucumis melo var. makuwa]2.1e-7380Show/hide
Query:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKI---KPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDR
        MQ + HPLP   D+PL+SGRRPLQPK  NSLP P+P+VAKI   KPE IQISLSGDANKEN PP     T +IESCD SLADELNAVKRK+ERLRLDG+R
Subjt:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKI---KPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDR

Query:  TEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTG
        TEKM RERD + EL+MKELL+R QEQR+LEMEVDRLFRLKELRSYCMRISPIRSLREKEREKI TDAQFPE E+GDGEESVGENSSLDSSEFVTG
Subjt:  TEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTG

XP_004142680.1 high mobility group B protein 6 [Cucumis sativus]2.8e-7380.51Show/hide
Query:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKI---KPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDR
        MQ + HPLP   DLPL+SGRRPLQPK  NSLP P+P+VAKI   KPE IQISLSGDANKEN PP     T +IESCD SLADELNAVKRK+ERLRLDG+R
Subjt:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKI---KPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDR

Query:  TEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTG
        TEKM RERD + EL+MKELL+R QEQR+LEMEVDRLFRLKELRSYCMRISPIRSLREKEREKI TDAQFPE E+GDGEESVGENSSLDSSEFVTG
Subjt:  TEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTG

XP_008463266.1 PREDICTED: high mobility group B protein 6 [Cucumis melo]3.1e-7279.49Show/hide
Query:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKI---KPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDR
        MQ + HPLP   D+PL+SGRRPLQPK  NSLP  +P+VAKI   KPE IQISLSGDANKEN PP     T +IESCD SLADELNAVKRK+ERLRLDG+R
Subjt:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKI---KPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDR

Query:  TEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTG
        TEKM RERD + EL+MKELL+R QEQR+LEMEVDRLFRLKELRSYCMRISPIRSLREKEREKI TDAQFPE E+GDGEESVGENSSLDSSEFVTG
Subjt:  TEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTG

XP_022144077.1 high mobility group B protein 6 [Momordica charantia]2.7e-97100Show/hide
Query:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKIKPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDRTEK
        MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKIKPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDRTEK
Subjt:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKIKPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDRTEK

Query:  MFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTGI
        MFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTGI
Subjt:  MFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTGI

XP_038883293.1 uncharacterized protein LOC120074285 [Benincasa hispida]8.0e-7380.3Show/hide
Query:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKI---KPERIQISLSGDANKENLPPIPATA---TATIESCDSSLADELNAVKRKLERLRLD
        MQ + HPL    DLPL+SGRRPLQPK  NSLP   P+VAK    KPERIQISLSGDANKEN PPI ATA   TA+IESCDSSLADELNAVKRKLERLRLD
Subjt:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKI---KPERIQISLSGDANKENLPPIPATA---TATIESCDSSLADELNAVKRKLERLRLD

Query:  GDRTEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTG
        G+RTE+M RERD + EL+MKELL+R QEQR+LEMEVDRLFRLKELRSYCMRISPIRSLREKEREKI TDAQFPE E+GDGEESVGENSSLDS+ FVTG
Subjt:  GDRTEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTG

TrEMBL top hitse value%identityAlignment
A0A0A0L063 Uncharacterized protein1.3e-7380.51Show/hide
Query:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKI---KPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDR
        MQ + HPLP   DLPL+SGRRPLQPK  NSLP P+P+VAKI   KPE IQISLSGDANKEN PP     T +IESCD SLADELNAVKRK+ERLRLDG+R
Subjt:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKI---KPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDR

Query:  TEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTG
        TEKM RERD + EL+MKELL+R QEQR+LEMEVDRLFRLKELRSYCMRISPIRSLREKEREKI TDAQFPE E+GDGEESVGENSSLDSSEFVTG
Subjt:  TEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTG

A0A1S3CJ78 high mobility group B protein 61.5e-7279.49Show/hide
Query:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKI---KPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDR
        MQ + HPLP   D+PL+SGRRPLQPK  NSLP  +P+VAKI   KPE IQISLSGDANKEN PP     T +IESCD SLADELNAVKRK+ERLRLDG+R
Subjt:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKI---KPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDR

Query:  TEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTG
        TEKM RERD + EL+MKELL+R QEQR+LEMEVDRLFRLKELRSYCMRISPIRSLREKEREKI TDAQFPE E+GDGEESVGENSSLDSSEFVTG
Subjt:  TEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTG

A0A5A7SJQ2 High mobility group B protein 61.0e-7380Show/hide
Query:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKI---KPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDR
        MQ + HPLP   D+PL+SGRRPLQPK  NSLP P+P+VAKI   KPE IQISLSGDANKEN PP     T +IESCD SLADELNAVKRK+ERLRLDG+R
Subjt:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKI---KPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDR

Query:  TEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTG
        TEKM RERD + EL+MKELL+R QEQR+LEMEVDRLFRLKELRSYCMRISPIRSLREKEREKI TDAQFPE E+GDGEESVGENSSLDSSEFVTG
Subjt:  TEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTG

A0A5D3CEI7 High mobility group B protein 61.5e-7279.49Show/hide
Query:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKI---KPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDR
        MQ + HPLP   D+PL+SGRRPLQPK  NSLP  +P+VAKI   KPE IQISLSGDANKEN PP     T +IESCD SLADELNAVKRK+ERLRLDG+R
Subjt:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKI---KPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDR

Query:  TEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTG
        TEKM RERD + EL+MKELL+R QEQR+LEMEVDRLFRLKELRSYCMRISPIRSLREKEREKI TDAQFPE E+GDGEESVGENSSLDSSEFVTG
Subjt:  TEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTG

A0A6J1CSN6 high mobility group B protein 61.3e-97100Show/hide
Query:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKIKPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDRTEK
        MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKIKPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDRTEK
Subjt:  MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKIKPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDRTEK

Query:  MFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTGI
        MFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTGI
Subjt:  MFRERDAIFELQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTGI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G23800.1 HMG (high mobility group) box protein3.8e-0427.42Show/hide
Query:  PAVAKIKPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDRTEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFR
        PA  K KP   + +L         PP P +          S   +L  ++  LE+++++ D+TE++ +E+D I   + +EL  R  EQ +L++E+ +L +
Subjt:  PAVAKIKPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDRTEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFR

Query:  LKELRSYCMRISPIRSLREKEREK
        +KE +          SL + E+EK
Subjt:  LKELRSYCMRISPIRSLREKEREK

AT4G23800.2 HMG (high mobility group) box protein3.8e-0427.42Show/hide
Query:  PAVAKIKPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDRTEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFR
        PA  K KP   + +L         PP P +          S   +L  ++  LE+++++ D+TE++ +E+D I   + +EL  R  EQ +L++E+ +L +
Subjt:  PAVAKIKPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDRTEKMFRERDAIFELQMKELLRRGQEQRELEMEVDRLFR

Query:  LKELRSYCMRISPIRSLREKEREK
        +KE +          SL + E+EK
Subjt:  LKELRSYCMRISPIRSLREKEREK

AT5G01910.1 unknown protein3.7e-2345.68Show/hide
Query:  SGRRPLQPKNSNSLPTPLPAVAKIKPERIQISLSGDANKENLPPIPATATATIE-SCDSSLADELNAVKRKLERLRLDGDRTEKMFRERDAIFELQMKEL
        SGR+ LQP+  N   TP      +KP+      + +  KENL          +E S D+SLA+EL+A K+KLERLR D + TEK+ +ERD   +L M  L
Subjt:  SGRRPLQPKNSNSLPTPLPAVAKIKPERIQISLSGDANKENLPPIPATATATIE-SCDSSLADELNAVKRKLERLRLDGDRTEKMFRERDAIFELQMKEL

Query:  LRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESV
        L+RG+ Q+ LE++VDRLFRLKEL +Y  +ISPIRSLR KE+++ +    F   E  D E SV
Subjt:  LRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESV

AT5G01910.2 unknown protein2.4e-2247.55Show/hide
Query:  SGRRPLQPKNSNSLPTPLPAVAKIKPERIQISLSGDANKENLPPIPATATATIE-SCDSSLADELNAVKRKLERLRLDGDRTEKMFRERDAIFELQMKEL
        SGR+ LQP+  N   TP      +KP+      + +  KENL          +E S D+SLA+EL+A K+KLERLR D + TEK+ +ERD   +L M  L
Subjt:  SGRRPLQPKNSNSLPTPLPAVAKIKPERIQISLSGDANKENLPPIPATATATIE-SCDSSLADELNAVKRKLERLRLDGDRTEKMFRERDAIFELQMKEL

Query:  LRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREK
        L+RG+ Q+ LE++VDRLFRLKEL +Y  +ISPIRSLR KE+++
Subjt:  LRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGCCATTCTCCATCCCCTGCCCGGAGCTCACGATCTCCCTCTAAGATCCGGCCGGCGGCCTCTCCAGCCGAAGAATTCCAATTCCCTGCCAACTCCTCTACCCGC
CGTCGCCAAAATCAAGCCCGAACGCATCCAGATCTCGCTCTCCGGCGACGCCAACAAGGAGAACCTTCCGCCGATTCCAGCGACAGCGACGGCGACGATCGAGTCCTGTG
ATTCGTCACTTGCGGATGAGCTCAATGCGGTCAAGAGGAAGCTCGAGAGATTGAGATTGGACGGCGACAGGACGGAGAAGATGTTCAGAGAGAGGGATGCGATCTTCGAG
TTGCAGATGAAGGAGCTGCTGAGGAGAGGTCAAGAGCAGAGGGAACTGGAGATGGAGGTCGATAGGTTATTCAGATTGAAGGAACTCAGATCTTACTGTATGAGAATTTC
TCCGATTCGGAGTCTCAGAGAAAAAGAGCGAGAAAAGATCATCACCGATGCACAATTTCCGGAAATTGAAGTCGGCGATGGAGAAGAATCTGTTGGCGAGAATTCATCGC
TGGATTCTTCAGAATTCGTCACAGGTATA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGCCATTCTCCATCCCCTGCCCGGAGCTCACGATCTCCCTCTAAGATCCGGCCGGCGGCCTCTCCAGCCGAAGAATTCCAATTCCCTGCCAACTCCTCTACCCGC
CGTCGCCAAAATCAAGCCCGAACGCATCCAGATCTCGCTCTCCGGCGACGCCAACAAGGAGAACCTTCCGCCGATTCCAGCGACAGCGACGGCGACGATCGAGTCCTGTG
ATTCGTCACTTGCGGATGAGCTCAATGCGGTCAAGAGGAAGCTCGAGAGATTGAGATTGGACGGCGACAGGACGGAGAAGATGTTCAGAGAGAGGGATGCGATCTTCGAG
TTGCAGATGAAGGAGCTGCTGAGGAGAGGTCAAGAGCAGAGGGAACTGGAGATGGAGGTCGATAGGTTATTCAGATTGAAGGAACTCAGATCTTACTGTATGAGAATTTC
TCCGATTCGGAGTCTCAGAGAAAAAGAGCGAGAAAAGATCATCACCGATGCACAATTTCCGGAAATTGAAGTCGGCGATGGAGAAGAATCTGTTGGCGAGAATTCATCGC
TGGATTCTTCAGAATTCGTCACAGGTATA
Protein sequenceShow/hide protein sequence
MQAILHPLPGAHDLPLRSGRRPLQPKNSNSLPTPLPAVAKIKPERIQISLSGDANKENLPPIPATATATIESCDSSLADELNAVKRKLERLRLDGDRTEKMFRERDAIFE
LQMKELLRRGQEQRELEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIITDAQFPEIEVGDGEESVGENSSLDSSEFVTGI