; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013861 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013861
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-H2 finger protein ATL74-like
Genome locationscaffold607:347583..348053
RNA-Seq ExpressionMS013861
SyntenyMS013861
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025403.1 RING-H2 finger protein ATL74 [Cucumis melo var. makuwa]2.3e-3864.08Show/hide
Query:  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAIC
        M +I R F A PP  P+ T   NL  N+VI LAALL AL+GALVVNSI+RC+ RR W   +R          R ELEEIPVAVF G    R+RGTECAIC
Subjt:  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAIC

Query:  LGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSL
        LGEFE G+DLRILP C+HGFHV+CID WLVSHSSCPNCRHS+
Subjt:  LGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSL

XP_008463261.1 PREDICTED: RING-H2 finger protein ATL74 [Cucumis melo]6.8e-3863.38Show/hide
Query:  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAIC
        M +I R F A PP  P+ T   NL  N+VI LAALL AL+GALVVNSI+RC+ RR W   +R          R ELE IPVAVF G    R+RGTECAIC
Subjt:  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAIC

Query:  LGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSL
        LGEFE G+DLRILP C+HGFHV+CID WLVSHSSCPNCRHS+
Subjt:  LGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSL

XP_011653722.1 RING-H2 finger protein ATL74 isoform X1 [Cucumis sativus]3.1e-3860.51Show/hide
Query:  SSESLQPIPY--PTKMLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFA
        SS+++ P  +  PTK +Q         P PP+  +   LD N+VI+LAALL ALVGALV+NSILRC+ RR W      SAA A V+R+ ELEEIPVAV+ 
Subjt:  SSESLQPIPY--PTKMLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFA

Query:  GAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSL
        G    +IRGTECAICLGEFE G+ LRI+P C+HGFHV+CID WLVSHSSCPNCRHSL
Subjt:  GAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSL

XP_014497284.1 RING-H2 finger protein ATL74 [Vigna radiata var. radiata]8.6e-3359.31Show/hide
Query:  ALPPSPPSNT-----SEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR--RRWGGLSRESAAL----AGVKRRGELEEIPVAVFAGAAEGRIRGTECA
        ++PPS  +NT     S+ N D N+VI+LAALLCAL+ AL +NSI RC  R  RR+G  + E AA      G+KRR EL  IPVAV+ GA+   I  TEC 
Subjt:  ALPPSPPSNT-----SEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR--RRWGGLSRESAAL----AGVKRRGELEEIPVAVFAGAAEGRIRGTECA

Query:  ICLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL
        ICLGEFE GD +R+LP C+HGFHV+CID WL+SHSSCPNCRHSLL
Subjt:  ICLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL

XP_022144089.1 RING-H2 finger protein ATL74-like [Momordica charantia]9.4e-7296.5Show/hide
Query:  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAIC
        M QISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGAL VNSILRC+ARRRWG LSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAIC
Subjt:  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAIC

Query:  LGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL
        LGEFEIGDDLRILPNCSHGFHVNCIDHW VSHSSCPNCRHSLL
Subjt:  LGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL

TrEMBL top hitse value%identityAlignment
A0A0A0L057 RING-type domain-containing protein1.5e-3860.51Show/hide
Query:  SSESLQPIPY--PTKMLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFA
        SS+++ P  +  PTK +Q         P PP+  +   LD N+VI+LAALL ALVGALV+NSILRC+ RR W      SAA A V+R+ ELEEIPVAV+ 
Subjt:  SSESLQPIPY--PTKMLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFA

Query:  GAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSL
        G    +IRGTECAICLGEFE G+ LRI+P C+HGFHV+CID WLVSHSSCPNCRHSL
Subjt:  GAAEGRIRGTECAICLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSL

A0A1S3CKD5 RING-H2 finger protein ATL743.3e-3863.38Show/hide
Query:  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAIC
        M +I R F A PP  P+ T   NL  N+VI LAALL AL+GALVVNSI+RC+ RR W   +R          R ELE IPVAVF G    R+RGTECAIC
Subjt:  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAIC

Query:  LGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSL
        LGEFE G+DLRILP C+HGFHV+CID WLVSHSSCPNCRHS+
Subjt:  LGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSL

A0A5A7SL64 RING-H2 finger protein ATL741.1e-3864.08Show/hide
Query:  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAIC
        M +I R F A PP  P+ T   NL  N+VI LAALL AL+GALVVNSI+RC+ RR W   +R          R ELEEIPVAVF G    R+RGTECAIC
Subjt:  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAIC

Query:  LGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSL
        LGEFE G+DLRILP C+HGFHV+CID WLVSHSSCPNCRHS+
Subjt:  LGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSL

A0A5D3CEJ5 RING-H2 finger protein ATL743.3e-3863.38Show/hide
Query:  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAIC
        M +I R F A PP  P+ T   NL  N+VI LAALL AL+GALVVNSI+RC+ RR W   +R          R ELE IPVAVF G    R+RGTECAIC
Subjt:  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAIC

Query:  LGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSL
        LGEFE G+DLRILP C+HGFHV+CID WLVSHSSCPNCRHS+
Subjt:  LGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSL

A0A6J1CR99 RING-H2 finger protein ATL74-like4.6e-7296.5Show/hide
Query:  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAIC
        M QISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGAL VNSILRC+ARRRWG LSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAIC
Subjt:  MLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAIC

Query:  LGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL
        LGEFEIGDDLRILPNCSHGFHVNCIDHW VSHSSCPNCRHSLL
Subjt:  LGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL

SwissProt top hitse value%identityAlignment
Q6NQG7 RING-H2 finger protein ATL785.5e-2243.48Show/hide
Query:  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR-------RRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFE
        P+P     + N D NVV+VL+ LLCALV +L +NSI+RC  R          G          GVKR+  L+      ++         TECAICL EF 
Subjt:  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR-------RRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFE

Query:  IGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL
          + +++LP C HGFHV CID WL SHSSCP CRH L+
Subjt:  IGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL

Q9FLC6 RING-H2 finger protein ATL733.7e-2647.48Show/hide
Query:  LPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR--RRW----GGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEF
        L  S  +N +  ++D ++VI+LAALLCAL+ AL +NS+LRC+ R  RR+      +   +    G+K+R  L+ IPV  +  + E +++ TEC ICLG+F
Subjt:  LPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR--RRW----GGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEF

Query:  EIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL
          G+ +R+LP C+HGFHV CID WL+SHSSCP CR SLL
Subjt:  EIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL

Q9LM69 RING-H2 finger protein ATL802.9e-2342.36Show/hide
Query:  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRE-------------SAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAI
        PSP  + S   L+ ++V++LAALLCAL+  L + ++ RC+  RR    +R              +AA  G+K++  L+ +P   F+  +    +  ECAI
Subjt:  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRE-------------SAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAI

Query:  CLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL
        CL EF  GD+LR+LP C HGFHV CID WL SHSSCP+CR  L+
Subjt:  CLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL

Q9LZV8 RING-H2 finger protein ATL742.0e-3259.23Show/hide
Query:  TSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAA-----LAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRIL
        T + N D N+VI+LAALLCAL+ AL +NSILRC A R   GLS  +AA      AG+K+R EL++ PVA + G+ E +I  TECAICLGEF  G+ +R+L
Subjt:  TSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAA-----LAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRIL

Query:  PNCSHGFHVNCIDHWLVSHSSCPNCRHSLL
        P C+H FH++CID WLVSHSSCPNCRHSL+
Subjt:  PNCSHGFHVNCIDHWLVSHSSCPNCRHSLL

Q9SG96 RING-H2 finger protein ATL721.3e-2646.9Show/hide
Query:  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR--RRWGGLSRES------------AALAGVKRRGELEEIPVAVFAGAAEGRIRGTECA
        P P    ++   D N+VI+LAALLCAL+ AL +NS LRC+ R  RR+    + S            AA  G+K++  L++IPV ++ G+    ++ TEC 
Subjt:  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR--RRWGGLSRES------------AALAGVKRRGELEEIPVAVFAGAAEGRIRGTECA

Query:  ICLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL
        ICLG+FE G+ +R+LP C+HGFHV CID WL+S SSCP CR SLL
Subjt:  ICLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL

Arabidopsis top hitse value%identityAlignment
AT1G20823.1 RING/U-box superfamily protein2.1e-2442.36Show/hide
Query:  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRE-------------SAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAI
        PSP  + S   L+ ++V++LAALLCAL+  L + ++ RC+  RR    +R              +AA  G+K++  L+ +P   F+  +    +  ECAI
Subjt:  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRE-------------SAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAI

Query:  CLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL
        CL EF  GD+LR+LP C HGFHV CID WL SHSSCP+CR  L+
Subjt:  CLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL

AT1G49230.1 RING/U-box superfamily protein3.9e-2343.48Show/hide
Query:  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR-------RRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFE
        P+P     + N D NVV+VL+ LLCALV +L +NSI+RC  R          G          GVKR+  L+      ++         TECAICL EF 
Subjt:  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR-------RRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFE

Query:  IGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL
          + +++LP C HGFHV CID WL SHSSCP CRH L+
Subjt:  IGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL

AT3G10910.1 RING/U-box superfamily protein8.9e-2846.9Show/hide
Query:  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR--RRWGGLSRES------------AALAGVKRRGELEEIPVAVFAGAAEGRIRGTECA
        P P    ++   D N+VI+LAALLCAL+ AL +NS LRC+ R  RR+    + S            AA  G+K++  L++IPV ++ G+    ++ TEC 
Subjt:  PSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR--RRWGGLSRES------------AALAGVKRRGELEEIPVAVFAGAAEGRIRGTECA

Query:  ICLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL
        ICLG+FE G+ +R+LP C+HGFHV CID WL+S SSCP CR SLL
Subjt:  ICLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL

AT5G01880.1 RING/U-box superfamily protein1.4e-3359.23Show/hide
Query:  TSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAA-----LAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRIL
        T + N D N+VI+LAALLCAL+ AL +NSILRC A R   GLS  +AA      AG+K+R EL++ PVA + G+ E +I  TECAICLGEF  G+ +R+L
Subjt:  TSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAA-----LAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEFEIGDDLRIL

Query:  PNCSHGFHVNCIDHWLVSHSSCPNCRHSLL
        P C+H FH++CID WLVSHSSCPNCRHSL+
Subjt:  PNCSHGFHVNCIDHWLVSHSSCPNCRHSLL

AT5G05280.1 RING/U-box superfamily protein2.6e-2747.48Show/hide
Query:  LPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR--RRW----GGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEF
        L  S  +N +  ++D ++VI+LAALLCAL+ AL +NS+LRC+ R  RR+      +   +    G+K+R  L+ IPV  +  + E +++ TEC ICLG+F
Subjt:  LPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLAR--RRW----GGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTECAICLGEF

Query:  EIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL
          G+ +R+LP C+HGFHV CID WL+SHSSCP CR SLL
Subjt:  EIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTCTCGTCGGAATCTCTGCAGCCAATTCCATACCCAACCAAAATGCTCCAGATCAGCCGCCGCTTCCCGGCGCTGCCGCCCTCGCCGCCGTCGAACACGAGCGAGAAGAA
TCTCGACTTCAACGTGGTGATAGTTCTGGCGGCTCTGCTCTGCGCTCTCGTCGGCGCACTCGTCGTCAACTCCATTCTCCGGTGCTTGGCGCGGCGGCGATGGGGCGGAC
TCAGCCGGGAGTCGGCCGCTCTGGCGGGGGTTAAGAGAAGAGGCGAATTGGAGGAGATTCCGGTGGCGGTGTTTGCGGGGGCGGCGGAAGGGAGAATCAGAGGTACGGAA
TGCGCGATTTGTTTGGGGGAATTTGAAATTGGCGACGATTTGAGGATTTTGCCCAATTGCAGCCATGGATTCCATGTGAATTGTATCGATCATTGGCTCGTCTCCCACTC
TTCGTGCCCTAATTGCCGGCATTCTCTGCTG
mRNA sequenceShow/hide mRNA sequence
TTCTCGTCGGAATCTCTGCAGCCAATTCCATACCCAACCAAAATGCTCCAGATCAGCCGCCGCTTCCCGGCGCTGCCGCCCTCGCCGCCGTCGAACACGAGCGAGAAGAA
TCTCGACTTCAACGTGGTGATAGTTCTGGCGGCTCTGCTCTGCGCTCTCGTCGGCGCACTCGTCGTCAACTCCATTCTCCGGTGCTTGGCGCGGCGGCGATGGGGCGGAC
TCAGCCGGGAGTCGGCCGCTCTGGCGGGGGTTAAGAGAAGAGGCGAATTGGAGGAGATTCCGGTGGCGGTGTTTGCGGGGGCGGCGGAAGGGAGAATCAGAGGTACGGAA
TGCGCGATTTGTTTGGGGGAATTTGAAATTGGCGACGATTTGAGGATTTTGCCCAATTGCAGCCATGGATTCCATGTGAATTGTATCGATCATTGGCTCGTCTCCCACTC
TTCGTGCCCTAATTGCCGGCATTCTCTGCTG
Protein sequenceShow/hide protein sequence
FSSESLQPIPYPTKMLQISRRFPALPPSPPSNTSEKNLDFNVVIVLAALLCALVGALVVNSILRCLARRRWGGLSRESAALAGVKRRGELEEIPVAVFAGAAEGRIRGTE
CAICLGEFEIGDDLRILPNCSHGFHVNCIDHWLVSHSSCPNCRHSLL