; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013875 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013875
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionIBR domain containing protein
Genome locationscaffold607:513833..514330
RNA-Seq ExpressionMS013875
SyntenyMS013875
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603545.1 hypothetical protein SDJN03_04154, partial [Cucurbita argyrosperma subsp. sororia]5.9e-5673.65Show/hide
Query:  SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPK
        +SDYP KSLQ K NDKFFSKLL+RESSRAN SSR +YYGG AGAVPFVWESQPGTP HRFSD LTPPLTPPPS+FS S +KPPKNRSKSL+LFHIFFN K
Subjt:  SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPK

Query:  RKFDLLAPPFSRSATLPSSGSAIDSPARVKFATGRRTAAR-----RCSEEEEEAAATGSVMCFGIRR
        RK DLL PP S+SA+LPSSGS  DS    KFA GRR+A R       S+E E+AAA+GSV+CFGI R
Subjt:  RKFDLLAPPFSRSATLPSSGSAIDSPARVKFATGRRTAAR-----RCSEEEEEAAATGSVMCFGIRR

XP_008464261.1 PREDICTED: uncharacterized protein LOC103502186 [Cucumis melo]2.6e-5676.22Show/hide
Query:  SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPK
        +SDYPQKSLQ KQNDKFFSK+LSRESSRAN SSR +YYGG AGAVPFVWESQPGTP HRFSD LTPPLTPPPS+FSDS KKP K RSKSL+L HIFFN K
Subjt:  SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPK

Query:  RKFDLLA-PPFSRSATLPSSGSAIDSPARVKFATGRRTAARRCSEEEEE-AAATGSVMCFGIRR
        RKFDLL+ PP S+SA+LPS GS  DS A  KF TGRR+A R  +E+EEE AAA+GSV+CFG+ R
Subjt:  RKFDLLA-PPFSRSATLPSSGSAIDSPARVKFATGRRTAARRCSEEEEE-AAATGSVMCFGIRR

XP_011653717.1 uncharacterized protein LOC105435254 [Cucumis sativus]1.2e-5374.39Show/hide
Query:  SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPK
        +S+YPQKSLQ KQNDKF SK+LSRESSRAN SSR +YYGG AGAVPFVWESQPGTP HRFSD LTPPLTPPPS+FSDS KKP K RSKSL+L HIFF+ K
Subjt:  SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPK

Query:  RKFDLLA-PPFSRSATLPSSGSAIDSPARVKFATGRRTAARRCSEEEEE-AAATGSVMCFGIRR
        RKFDLL+ PP S+S +L SSGS  DS A  KF TGRR+A R  +E+EEE AAAT SV+CFGI R
Subjt:  RKFDLLA-PPFSRSATLPSSGSAIDSPARVKFATGRRTAARRCSEEEEE-AAATGSVMCFGIRR

XP_022144087.1 uncharacterized protein LOC111013865, partial [Momordica charantia]1.7e-6699.25Show/hide
Query:  MSSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNP
        MSSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPF WESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNP
Subjt:  MSSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNP

Query:  KRKFDLLAPPFSRSATLPSSGSAIDSPARVKFA
        KRKFDLLAPPFSRSATLPSSGSAIDSPARVKFA
Subjt:  KRKFDLLAPPFSRSATLPSSGSAIDSPARVKFA

XP_038882810.1 uncharacterized protein LOC120073955 [Benincasa hispida]3.4e-5673.65Show/hide
Query:  SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPK
        +SDYPQKSLQ KQNDKFFSK+LSRESSRAN SSR +YYGG AGAVPFVWESQPGTP HRFSD LTP LTPPPS+FSDS KKP K RSKSL+L HI FN K
Subjt:  SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPK

Query:  RKFDLLAPPFSRSATLPSSGSAIDSPARVKFATGRRTAAR-----RCSEEEEEAAATGSVMCFGIRR
        RK DLL+PPFS+SA+LPSSGS  DS    KF TGRR+  R       S+EEE+AAATGS++CFGI R
Subjt:  RKFDLLAPPFSRSATLPSSGSAIDSPARVKFATGRRTAAR-----RCSEEEEEAAATGSVMCFGIRR

TrEMBL top hitse value%identityAlignment
A0A0A0L1H9 Uncharacterized protein5.9e-5474.39Show/hide
Query:  SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPK
        +S+YPQKSLQ KQNDKF SK+LSRESSRAN SSR +YYGG AGAVPFVWESQPGTP HRFSD LTPPLTPPPS+FSDS KKP K RSKSL+L HIFF+ K
Subjt:  SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPK

Query:  RKFDLLA-PPFSRSATLPSSGSAIDSPARVKFATGRRTAARRCSEEEEE-AAATGSVMCFGIRR
        RKFDLL+ PP S+S +L SSGS  DS A  KF TGRR+A R  +E+EEE AAAT SV+CFGI R
Subjt:  RKFDLLA-PPFSRSATLPSSGSAIDSPARVKFATGRRTAARRCSEEEEE-AAATGSVMCFGIRR

A0A1S3CL26 uncharacterized protein LOC1035021861.3e-5676.22Show/hide
Query:  SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPK
        +SDYPQKSLQ KQNDKFFSK+LSRESSRAN SSR +YYGG AGAVPFVWESQPGTP HRFSD LTPPLTPPPS+FSDS KKP K RSKSL+L HIFFN K
Subjt:  SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPK

Query:  RKFDLLA-PPFSRSATLPSSGSAIDSPARVKFATGRRTAARRCSEEEEE-AAATGSVMCFGIRR
        RKFDLL+ PP S+SA+LPS GS  DS A  KF TGRR+A R  +E+EEE AAA+GSV+CFG+ R
Subjt:  RKFDLLA-PPFSRSATLPSSGSAIDSPARVKFATGRRTAARRCSEEEEE-AAATGSVMCFGIRR

A0A6J1CSP7 uncharacterized protein LOC1110138658.0e-6799.25Show/hide
Query:  MSSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNP
        MSSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPF WESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNP
Subjt:  MSSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNP

Query:  KRKFDLLAPPFSRSATLPSSGSAIDSPARVKFA
        KRKFDLLAPPFSRSATLPSSGSAIDSPARVKFA
Subjt:  KRKFDLLAPPFSRSATLPSSGSAIDSPARVKFA

A0A6J1EB06 uncharacterized protein LOC1114324131.8e-5069.94Show/hide
Query:  SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPK
        +SD   +SLQIK NDKFFSKLL+RESSRA+ SSR VYY G AGAVPF WESQPGTP HRFSD LTPPLTPPPS+FSDS KKPPK RSKSL+LFHIFFNPK
Subjt:  SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPK

Query:  RKF-DLLAPPFSRSATLPSSGSAIDSPARVKFATGRRTAARRCSEEEEEAAATGSVMCFGIRR
        RK  DLL+PPFS+SA+LPSSGS  DS A  +F     +      E+   AA TGSV+CFGI R
Subjt:  RKF-DLLAPPFSRSATLPSSGSAIDSPARVKFATGRRTAARRCSEEEEEAAATGSVMCFGIRR

A0A6J1IKR7 uncharacterized protein LOC1114783346.4e-4868.32Show/hide
Query:  SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPK
        +SDYP KSLQ K NDKFFSKLL+RESSRAN SSR +YYGG AGAVPFVWESQPGTP HRFSD LTPPLTPPPS+FS S +KPPKNRSKSL+LFHIFFN K
Subjt:  SSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPK

Query:  RKFDLLAPPFSRSATLPSSGSAIDSPARVKFATGRRTAARRCSEEEEEAAATGSVMCFGIR
        RK DLL PP S+SA+LPSSGS  DS      A G    AR  + E       G   C G+R
Subjt:  RKFDLLAPPFSRSATLPSSGSAIDSPARVKFATGRRTAARRCSEEEEEAAATGSVMCFGIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G06930.1 unknown protein6.4e-0835.65Show/hide
Query:  YYGGFAGAVPFVWESQPGTPKH--------------RFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLN-LFHIFFNPKRKFDLLAPPFSRSATLPSSGS
        YYGG + AVPF WESQPGTP+                F+  ++ PLTPPPS+F  S         K  N LF    +  R      P    S++  SS S
Subjt:  YYGGFAGAVPFVWESQPGTPKH--------------RFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLN-LFHIFFNPKRKFDLLAPPFSRSATLPSSGS

Query:  AIDSPARVKFATGRR
           SP R    + RR
Subjt:  AIDSPARVKFATGRR

AT2G40475.1 unknown protein3.5e-1437.18Show/hide
Query:  NDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHR-FSDHL-TPPLTPPPSFFSDSAKKPPK-NRSKSLNLFHIFFNPKRKFDLLAPPF
        N    SK++ +ESS+ NSSSR  YYGG   +VPF+WE++PGTPKH  FS+ L  PPLTPPPS++S S+    K ++++++     F        +  P F
Subjt:  NDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHR-FSDHL-TPPLTPPPSFFSDSAKKPPK-NRSKSLNLFHIFFNPKRKFDLLAPPF

Query:  SRSATLPSSGSAIDS---PARV-----KFATGRRTAARRCSEEEEEAAATGSVMCF
        S S+   SS S+  S   P++V     K  +  R+  +   EEE  +++  S +C+
Subjt:  SRSATLPSSGSAIDS---PARV-----KFATGRRTAARRCSEEEEEAAATGSVMCF

AT3G56260.2 unknown protein7.5e-0932.89Show/hide
Query:  ESSRANSSSRSVYYGGFAGAVPFVWESQPGTPK-HRFSDHLTP-PLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDL----------LAPPFSR
        E   A    RS YYGG   ++PF+WES+PGTPK H  SD   P PLTPPPS++S      P+ +SK  +    F +     DL           +  FS 
Subjt:  ESSRANSSSRSVYYGGFAGAVPFVWESQPGTPK-HRFSDHLTP-PLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDL----------LAPPFSR

Query:  SATLPSSGSAIDSPARVK--FATGRRTAARRCSEEEEE--AAATGSVMC
        S+T  SS  +   P  +K   +  +++     + EE+E  ++ T ++ C
Subjt:  SATLPSSGSAIDSPARVK--FATGRRTAARRCSEEEEE--AAATGSVMC

AT4G25845.1 BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2)1.1e-0440.91Show/hide
Query:  SSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKP------PKN
        SS + +SS   Y       VPF WE QPGTP +     + PPL+PPP+  S    KP      PKN
Subjt:  SSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKP------PKN

AT5G01790.1 unknown protein1.6e-1139.55Show/hide
Query:  SLQIKQND--KFFSKLLSRES-----SRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLT-PPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNP
        SL +K+ D   F  KL S +      S A  S R  YY G AGAVPF WES PGTPKH  S+  T PPLTPPPS FS S  +  + RSK      +   P
Subjt:  SLQIKQND--KFFSKLLSRES-----SRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLT-PPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNP

Query:  KRKFDLLAPPFSRSATLPSSGSAIDSPARV----------KFATGRRTAARRCSEEEEEA----AATGSVMCFGIRR
         R F L      ++  L S+ S      RV          KF T  R   RR S  +  A      + S  CFGIRR
Subjt:  KRKFDLLAPPFSRSATLPSSGSAIDSPARV----------KFATGRRTAARRCSEEEEEA----AATGSVMCFGIRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGCGAAATATGAGCTCCGATTATCCCCAAAAATCGCTCCAAATCAAGCAGAACGACAAATTCTTCTCCAAGCTTCTAAGCAGAGAAAGCTCCAGAGCCAATTCCTCTTC
CAGATCGGTCTACTATGGCGGATTCGCCGGCGCCGTCCCCTTCGTTTGGGAATCTCAGCCAGGTACGCCCAAACACCGATTCTCCGACCACCTTACGCCTCCTCTCACTC
CTCCTCCCTCTTTCTTCTCCGATTCCGCTAAAAAACCGCCCAAAAACCGCTCCAAATCCCTCAATCTCTTCCACATCTTCTTCAATCCCAAGCGGAAATTCGATCTGTTG
GCGCCGCCGTTTTCCAGATCCGCGACATTGCCGTCTTCCGGATCGGCGATCGACTCGCCTGCCAGAGTGAAGTTCGCCACCGGGCGCCGTACGGCGGCGCGGCGGTGTTC
GGAGGAGGAAGAGGAAGCGGCGGCCACCGGTTCGGTTATGTGTTTCGGAATCCGCAGG
mRNA sequenceShow/hide mRNA sequence
CTGCGAAATATGAGCTCCGATTATCCCCAAAAATCGCTCCAAATCAAGCAGAACGACAAATTCTTCTCCAAGCTTCTAAGCAGAGAAAGCTCCAGAGCCAATTCCTCTTC
CAGATCGGTCTACTATGGCGGATTCGCCGGCGCCGTCCCCTTCGTTTGGGAATCTCAGCCAGGTACGCCCAAACACCGATTCTCCGACCACCTTACGCCTCCTCTCACTC
CTCCTCCCTCTTTCTTCTCCGATTCCGCTAAAAAACCGCCCAAAAACCGCTCCAAATCCCTCAATCTCTTCCACATCTTCTTCAATCCCAAGCGGAAATTCGATCTGTTG
GCGCCGCCGTTTTCCAGATCCGCGACATTGCCGTCTTCCGGATCGGCGATCGACTCGCCTGCCAGAGTGAAGTTCGCCACCGGGCGCCGTACGGCGGCGCGGCGGTGTTC
GGAGGAGGAAGAGGAAGCGGCGGCCACCGGTTCGGTTATGTGTTTCGGAATCCGCAGG
Protein sequenceShow/hide protein sequence
LRNMSSDYPQKSLQIKQNDKFFSKLLSRESSRANSSSRSVYYGGFAGAVPFVWESQPGTPKHRFSDHLTPPLTPPPSFFSDSAKKPPKNRSKSLNLFHIFFNPKRKFDLL
APPFSRSATLPSSGSAIDSPARVKFATGRRTAARRCSEEEEEAAATGSVMCFGIRR