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MS013879 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013879
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionACT domain-containing protein
Genome locationscaffold607:524572..526393
RNA-Seq ExpressionMS013879
SyntenyMS013879
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008464258.1 PREDICTED: uncharacterized protein LOC103502184 [Cucumis melo]4.2e-4083.47Show/hide
Query:  MGSRERKK--AAASSQNHKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQV
        MGSRERKK  AAA+S +H SKEFRASTSSSA VNVESVERGF+INV+LERNSPGLLVRILE FEKLGL VLDA +SCSD FQLQAVGEENEG KIIK QV
Subjt:  MGSRERKK--AAASSQNHKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQV

Query:  VKKAVKQAIKEWSESESNGQA
        VK AVKQAIKEWSES+  GQA
Subjt:  VKKAVKQAIKEWSESESNGQA

XP_022144010.1 uncharacterized protein LOC111013797 [Momordica charantia]3.3e-53100Show/hide
Query:  MGSRERKKAAASSQNHKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVVK
        MGSRERKKAAASSQNHKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVVK
Subjt:  MGSRERKKAAASSQNHKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVVK

Query:  KAVKQAIKEWSESESNGQA
        KAVKQAIKEWSESESNGQA
Subjt:  KAVKQAIKEWSESESNGQA

XP_022950375.1 uncharacterized protein LOC111453491 [Cucurbita moschata]7.7e-4286.67Show/hide
Query:  MGSRERKKAAASSQN-HKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVV
        MGSRERKKAAASS N HKSKEFRASTSSSA VNVE++ERGF+INV+ ERNSPGLLV+ILE FEKLGLEVLDA VSCSD FQLQAVGEENEGTKIIK QVV
Subjt:  MGSRERKKAAASSQN-HKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVV

Query:  KKAVKQAIKEWSESESNGQA
        K AVKQAIKEW  SESNGQA
Subjt:  KKAVKQAIKEWSESESNGQA

XP_022977370.1 uncharacterized protein LOC111477723 [Cucurbita maxima]3.5e-4287.5Show/hide
Query:  MGSRERKKAAASSQN-HKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVV
        MGSRERKKAAASS N HKSKEFRASTSSSA VNVE +ERGF+INV+ ERNSPGLLVRILE FEKLGLEVLDA VSCSD FQLQAVGEENEGTKIIK QVV
Subjt:  MGSRERKKAAASSQN-HKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVV

Query:  KKAVKQAIKEWSESESNGQA
        K AVKQAIKEW  SESNGQA
Subjt:  KKAVKQAIKEWSESESNGQA

XP_038882922.1 uncharacterized protein LOC120074022 [Benincasa hispida]3.1e-4389.08Show/hide
Query:  MGSRERKKAAASSQNHKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVVK
        MGSRERKKAAASS +HKSKEFRASTSSSA VNVES+ERGF+INV+LERNSPGLLVRILE FEKLGLEVLDA VSCSD FQLQAVGEENEGTKIIK QVVK
Subjt:  MGSRERKKAAASSQNHKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVVK

Query:  KAVKQAIKEWSESESNGQA
         AVKQAIKEW  SESNGQA
Subjt:  KAVKQAIKEWSESESNGQA

TrEMBL top hitse value%identityAlignment
A0A0A0L039 Uncharacterized protein2.3e-3982.05Show/hide
Query:  MGSRERKKAAASSQN---HKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQ
        MGSRERKKAAA++ N   H SKEFRASTSS+A VNVESVERGF+INV+LERNSPGLLVRILE FEKLGL VLDA +SCSD FQLQA GEENEG KIIK Q
Subjt:  MGSRERKKAAASSQN---HKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQ

Query:  VVKKAVKQAIKEWSESE
        VVK AVKQAIKEWSES+
Subjt:  VVKKAVKQAIKEWSESE

A0A1S3CLI8 uncharacterized protein LOC1035021842.1e-4083.47Show/hide
Query:  MGSRERKK--AAASSQNHKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQV
        MGSRERKK  AAA+S +H SKEFRASTSSSA VNVESVERGF+INV+LERNSPGLLVRILE FEKLGL VLDA +SCSD FQLQAVGEENEG KIIK QV
Subjt:  MGSRERKK--AAASSQNHKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQV

Query:  VKKAVKQAIKEWSESESNGQA
        VK AVKQAIKEWSES+  GQA
Subjt:  VKKAVKQAIKEWSESESNGQA

A0A6J1CQF9 uncharacterized protein LOC1110137971.6e-53100Show/hide
Query:  MGSRERKKAAASSQNHKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVVK
        MGSRERKKAAASSQNHKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVVK
Subjt:  MGSRERKKAAASSQNHKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVVK

Query:  KAVKQAIKEWSESESNGQA
        KAVKQAIKEWSESESNGQA
Subjt:  KAVKQAIKEWSESESNGQA

A0A6J1GFJ5 uncharacterized protein LOC1114534913.7e-4286.67Show/hide
Query:  MGSRERKKAAASSQN-HKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVV
        MGSRERKKAAASS N HKSKEFRASTSSSA VNVE++ERGF+INV+ ERNSPGLLV+ILE FEKLGLEVLDA VSCSD FQLQAVGEENEGTKIIK QVV
Subjt:  MGSRERKKAAASSQN-HKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVV

Query:  KKAVKQAIKEWSESESNGQA
        K AVKQAIKEW  SESNGQA
Subjt:  KKAVKQAIKEWSESESNGQA

A0A6J1IM47 uncharacterized protein LOC1114777231.7e-4287.5Show/hide
Query:  MGSRERKKAAASSQN-HKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVV
        MGSRERKKAAASS N HKSKEFRASTSSSA VNVE +ERGF+INV+ ERNSPGLLVRILE FEKLGLEVLDA VSCSD FQLQAVGEENEGTKIIK QVV
Subjt:  MGSRERKKAAASSQN-HKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVV

Query:  KKAVKQAIKEWSESESNGQA
        K AVKQAIKEW  SESNGQA
Subjt:  KKAVKQAIKEWSESESNGQA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G29270.1 unknown protein3.1e-0433.73Show/hide
Query:  EVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKI-----IKPQVVKKAVKQAI
        EV VE +   F + +   R     LV ILE FE++GL V  A  SC DSF ++A+       K+     +   +VK  VK ++
Subjt:  EVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKI-----IKPQVVKKAVKQAI

AT2G40435.1 BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1)1.4e-1750Show/hide
Query:  VNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVVKKAVKQAIKEWSE
        V VE++++GF+INV+  +N PG+LV +LE FE +GL VL+A  SC+DSF L A+G ENE  + +  + VK+AV  AI+ W E
Subjt:  VNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVVKKAVKQAIKEWSE

AT3G56220.1 transcription regulators5.0e-1539.29Show/hide
Query:  ERKKAAASSQNHKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVG-EENEGTKIIKPQVVKKAV
        ++K    ++     + FR S+  +  V VE++E+GF+I V   +N  G+LV +LE FE LGL+V++A VSC+D+F L A+G   N+    I  + VK+AV
Subjt:  ERKKAAASSQNHKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVG-EENEGTKIIKPQVVKKAV

Query:  KQAIKEWSESES
         +AI+ WS+S +
Subjt:  KQAIKEWSESES


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCGAGGGAGCGAAAGAAAGCAGCAGCTTCTTCTCAGAATCATAAGTCCAAAGAATTTCGTGCATCCACAAGCTCTAGTGCTGAGGTGAATGTGGAGAGCGTAGA
GAGGGGTTTTGTGATAAATGTGTATTTGGAGAGGAATTCACCGGGATTGCTGGTTCGGATTCTAGAAGTTTTTGAGAAATTGGGCCTCGAAGTCCTCGACGCCACCGTGT
CGTGCTCCGATTCGTTTCAACTCCAAGCTGTTGGGGAAGAGAACGAAGGCACCAAAATCATAAAGCCCCAAGTGGTGAAAAAGGCAGTAAAACAAGCAATCAAGGAATGG
AGTGAAAGTGAAAGTAATGGGCAGGCA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTCGAGGGAGCGAAAGAAAGCAGCAGCTTCTTCTCAGAATCATAAGTCCAAAGAATTTCGTGCATCCACAAGCTCTAGTGCTGAGGTGAATGTGGAGAGCGTAGA
GAGGGGTTTTGTGATAAATGTGTATTTGGAGAGGAATTCACCGGGATTGCTGGTTCGGATTCTAGAAGTTTTTGAGAAATTGGGCCTCGAAGTCCTCGACGCCACCGTGT
CGTGCTCCGATTCGTTTCAACTCCAAGCTGTTGGGGAAGAGAACGAAGGCACCAAAATCATAAAGCCCCAAGTGGTGAAAAAGGCAGTAAAACAAGCAATCAAGGAATGG
AGTGAAAGTGAAAGTAATGGGCAGGCA
Protein sequenceShow/hide protein sequence
MGSRERKKAAASSQNHKSKEFRASTSSSAEVNVESVERGFVINVYLERNSPGLLVRILEVFEKLGLEVLDATVSCSDSFQLQAVGEENEGTKIIKPQVVKKAVKQAIKEW
SESESNGQA