; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013896 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013896
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionmacrophage migration inhibitory factor homolog
Genome locationscaffold607:712009..712424
RNA-Seq ExpressionMS013896
SyntenyMS013896
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
InterPro domainsIPR001398 - Macrophage migration inhibitory factor
IPR014347 - Tautomerase/MIF superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFK37368.1 unknown [Lotus japonicus]6.3e-3269.23Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MPCLN+STNVNLD VD SS+ S+AT+TVA L+ +PEA+VM+VLKGSV ++FGG+  PAA+ EL+S+GG +PDVN++LSAAIA+ILE KLSVPK RF LKF
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YDVK
        YD K
Subjt:  YDVK

XP_014492467.1 macrophage migration inhibitory factor homolog isoform X1 [Vigna radiata var. radiata]6.3e-3269.23Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MPCLN+STNVNLD VD SS+ S+AT+TVA+++ +PEA+VM+VLKGSV I+FGG+  PAA+ EL+S+GG +PDVN++LSAAIAAILE KLSVPK R+ LKF
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YDVK
        YD K
Subjt:  YDVK

XP_014492468.1 macrophage migration inhibitory factor homolog isoform X2 [Vigna radiata var. radiata]6.3e-3269.23Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MPCLN+STNVNLD VD SS+ S+AT+TVA+++ +PEA+VM+VLKGSV I+FGG+  PAA+ EL+S+GG +PDVN++LSAAIAAILE KLSVPK R+ LKF
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YDVK
        YD K
Subjt:  YDVK

XP_022144076.1 macrophage migration inhibitory factor homolog [Momordica charantia]9.1e-4799.04Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MPCLNISTNVNLDAVDISSLHSDATA VAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YDVK
        YDVK
Subjt:  YDVK

XP_028957148.1 macrophage migration inhibitory factor homolog isoform X1 [Malus domestica]8.3e-3270.19Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MPCLNIS NVNLD VD S++ S+AT+TVA ++ +PEA+VM+VLKGSV I+FGG+  PAA+AEL+S+GG +PDVN++LSAAIAAILE KLSVPK RF LKF
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YDVK
        YD K
Subjt:  YDVK

TrEMBL top hitse value%identityAlignment
A0A1S3TFC2 macrophage migration inhibitory factor homolog isoform X23.1e-3269.23Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MPCLN+STNVNLD VD SS+ S+AT+TVA+++ +PEA+VM+VLKGSV I+FGG+  PAA+ EL+S+GG +PDVN++LSAAIAAILE KLSVPK R+ LKF
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YDVK
        YD K
Subjt:  YDVK

A0A1S3TFF2 macrophage migration inhibitory factor homolog isoform X13.1e-3269.23Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MPCLN+STNVNLD VD SS+ S+AT+TVA+++ +PEA+VM+VLKGSV I+FGG+  PAA+ EL+S+GG +PDVN++LSAAIAAILE KLSVPK R+ LKF
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YDVK
        YD K
Subjt:  YDVK

A0A6J1CS88 macrophage migration inhibitory factor homolog4.4e-4799.04Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MPCLNISTNVNLDAVDISSLHSDATA VAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YDVK
        YDVK
Subjt:  YDVK

I3SAS6 Uncharacterized protein3.1e-3269.23Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MPCLN+STNVNLD VD SS+ S+AT+TVA L+ +PEA+VM+VLKGSV ++FGG+  PAA+ EL+S+GG +PDVN++LSAAIA+ILE KLSVPK RF LKF
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YDVK
        YD K
Subjt:  YDVK

V7B5R8 Uncharacterized protein4.0e-3268.27Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MPCLN+STNVNLD VD SS+ ++AT+TVA+++ +PEA+VM+VLKGSV I+FGG+  PAA+ EL+S+GG SPDVN++LSAAIA++LE KLSVPK RF LKF
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YDVK
        YD K
Subjt:  YDVK

SwissProt top hitse value%identityAlignment
O55052 Macrophage migration inhibitory factor5.8e-0428.16Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MP   ++TNV   +V    L S+ T  +A    +P  ++ V +     +TF GS+DP A   L S+G      N+  S  +  +L  +L +   R  + +
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YDV
        YD+
Subjt:  YDV

P81529 Macrophage migration inhibitory factor homolog4.6e-0935.58Show/hide
Query:  MPCLNISTNVNLDAVDI-SSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILK
        MP   ++TN+   A D+ S   S  +A V  +L +P ++V V +     ++FGGS  PAA   LMS+GG  P  N+  SA +   L  KL +PK+R  + 
Subjt:  MPCLNISTNVNLDAVDI-SSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILK

Query:  FYDV
        F ++
Subjt:  FYDV

P81748 Macrophage migration inhibitory factor homolog7.8e-0933.65Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MP    STNV  + + +  L S  +  +A +L +PE++V V + G   ITFGG+  PA   +L+S+GG   + N+  SA +   L   L +P +R  + F
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YDVK
         D++
Subjt:  YDVK

P91850 Macrophage migration inhibitory factor homolog7.8e-0932.69Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MP   I TN+  +++  S+    A+  VA  L +PE++V + + G  ++ FGGS DP A   L S+G   P VN   +  +  +L  +L +PK+R  ++F
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YDVK
         D++
Subjt:  YDVK

Q02960 Macrophage migration inhibitory factor2.0e-0429.13Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MP   I TNV  DAV   SL  + T  +A    +P  ++ V +     ++FGGS DP A   L S+G      N+  +  +  ++   L V   R  + +
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YDV
        +D+
Subjt:  YDV

Arabidopsis top hitse value%identityAlignment
AT3G51660.1 Tautomerase/MIF superfamily protein1.6e-2046.6Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MPCL I+TNVN D V+    +S+ T  VA+++ RP+  VMVVLKGSV I FGG+ + AA+AE++S+GG +  V + L A + +IL    S+   RFI K 
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YDV
        +D+
Subjt:  YDV

AT5G01650.1 Tautomerase/MIF superfamily protein7.2e-3465.38Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MPCLN+STNVNLD VD SS+ S+A++TVA ++ +PE +VM+VLKGSV ++FGG+ DPAA+ EL+S+GG + DVN++LSAA++AILE KLSVPK RF LKF
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YDVK
        YD K
Subjt:  YDVK

AT5G01650.2 Tautomerase/MIF superfamily protein7.2e-3465.38Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MPCLN+STNVNLD VD SS+ S+A++TVA ++ +PE +VM+VLKGSV ++FGG+ DPAA+ EL+S+GG + DVN++LSAA++AILE KLSVPK RF LKF
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YDVK
        YD K
Subjt:  YDVK

AT5G57170.1 Tautomerase/MIF superfamily protein4.8e-2248.04Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MP LN+ TN+ +DAV  S +  DAT  VA ++ +PE++VM++L   V I F G+ +PAA+ EL+S+GG  P VN +LS  I+ IL+ KLS+   RF +KF
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YD
        YD
Subjt:  YD

AT5G57170.2 Tautomerase/MIF superfamily protein4.8e-2248.04Show/hide
Query:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF
        MP LN+ TN+ +DAV  S +  DAT  VA ++ +PE++VM++L   V I F G+ +PAA+ EL+S+GG  P VN +LS  I+ IL+ KLS+   RF +KF
Subjt:  MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKF

Query:  YD
        YD
Subjt:  YD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCTGCTTGAACATCTCAACCAACGTCAATCTCGACGCCGTCGACATCTCCTCCCTACACTCCGACGCCACCGCCACCGTCGCCGCCCTCCTCCGGCGCCCCGAGGC
GCACGTCATGGTTGTTCTCAAGGGATCCGTTTCGATTACATTCGGCGGCAGCGCCGATCCTGCCGCACACGCCGAATTGATGTCCGTCGGCGGTTTTAGTCCCGATGTTA
ACCAACGCCTCTCCGCTGCCATTGCCGCCATTCTTGAAGCCAAGCTTTCCGTTCCTAAACACAGATTCATCCTCAAATTTTACGACGTCAAG
mRNA sequenceShow/hide mRNA sequence
ATGCCCTGCTTGAACATCTCAACCAACGTCAATCTCGACGCCGTCGACATCTCCTCCCTACACTCCGACGCCACCGCCACCGTCGCCGCCCTCCTCCGGCGCCCCGAGGC
GCACGTCATGGTTGTTCTCAAGGGATCCGTTTCGATTACATTCGGCGGCAGCGCCGATCCTGCCGCACACGCCGAATTGATGTCCGTCGGCGGTTTTAGTCCCGATGTTA
ACCAACGCCTCTCCGCTGCCATTGCCGCCATTCTTGAAGCCAAGCTTTCCGTTCCTAAACACAGATTCATCCTCAAATTTTACGACGTCAAG
Protein sequenceShow/hide protein sequence
MPCLNISTNVNLDAVDISSLHSDATATVAALLRRPEAHVMVVLKGSVSITFGGSADPAAHAELMSVGGFSPDVNQRLSAAIAAILEAKLSVPKHRFILKFYDVK