CuGenDBv2

Gene ID	MS013909
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	kinetochore protein SPC24 homolog
Genome location	scaffold607:779974..780453
RNA-Seq Expression	MS013909
Synteny	MS013909
Gene Ontology terms	GO:0051983 - regulation of chromosome segregation (biological process)
InterPro domains	IPR044951 - Kinetochore protein SPC24-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022144074.1 uncharacterized protein LOC111013852 isoform X1 [Momordica charantia]

1.5e-47

98.15

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Query:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE
        MGDFSGKINIEELLSYGNDL+ALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQ DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE
Subjt:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE

Query:  HLLMEEIR
        HLLMEEIR
Subjt:  HLLMEEIR

XP_022144075.1 uncharacterized protein LOC111013852 isoform X2 [Momordica charantia]

1.5e-44

93.52

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Query:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE
        MGDFSGKINIEELLSYGNDL+ALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVH     +YEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE
Subjt:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE

Query:  HLLMEEIR
        HLLMEEIR
Subjt:  HLLMEEIR

XP_022931907.1 uncharacterized protein LOC111438184 [Cucurbita moschata]

4.4e-36

79.63

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Query:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE
        MGDFSGK+NIE+LLSYG+DL+ALLKDQ DVQTLNQCL+H  ALQS   DD  NVHSSVQ DYEKKIE CR KTEEAKARTVAD EMD+LE+E+EEE+R+E
Subjt:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE

Query:  HLLMEEIR
        HLLMEEIR
Subjt:  HLLMEEIR

XP_022966574.1 uncharacterized protein LOC111466216 [Cucurbita maxima]

4.0e-37

80.56

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Query:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE
        MGDFSGK+NIEELLSYGNDL+ LLKDQ DVQTLNQCL+H  ALQS C DDFSNVH  +  DYEKKIE CR KTEEAKARTVAD EMD+LE+E+EEELR+E
Subjt:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE

Query:  HLLMEEIR
        HLLMEEIR
Subjt:  HLLMEEIR

XP_023518318.1 uncharacterized protein LOC111781837 [Cucurbita pepo subsp. pepo]

2.6e-36

79.63

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Query:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE
        MGDFSGK+NIE+LLSYG+DL+ALLKDQ DVQTLNQCL+   ALQS C DD  NVHSSVQ DYEKKIE CR KTEEAKARTVAD EMD+LE+E+EEE+R+E
Subjt:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE

Query:  HLLMEEIR
        HLLMEEIR
Subjt:  HLLMEEIR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CQL9 uncharacterized protein LOC111013852 isoform X2

7.3e-45

93.52

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Query:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE
        MGDFSGKINIEELLSYGNDL+ALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVH     +YEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE
Subjt:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE

Query:  HLLMEEIR
        HLLMEEIR
Subjt:  HLLMEEIR

A0A6J1CR83 uncharacterized protein LOC111013852 isoform X1

7.1e-48

98.15

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Query:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE
        MGDFSGKINIEELLSYGNDL+ALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQ DYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE
Subjt:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE

Query:  HLLMEEIR
        HLLMEEIR
Subjt:  HLLMEEIR

A0A6J1F034 uncharacterized protein LOC111438184

2.1e-36

79.63

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Query:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE
        MGDFSGK+NIE+LLSYG+DL+ALLKDQ DVQTLNQCL+H  ALQS   DD  NVHSSVQ DYEKKIE CR KTEEAKARTVAD EMD+LE+E+EEE+R+E
Subjt:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE

Query:  HLLMEEIR
        HLLMEEIR
Subjt:  HLLMEEIR

A0A6J1HU69 uncharacterized protein LOC111466216

1.9e-37

80.56

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Query:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE
        MGDFSGK+NIEELLSYGNDL+ LLKDQ DVQTLNQCL+H  ALQS C DDFSNVH  +  DYEKKIE CR KTEEAKARTVAD EMD+LE+E+EEELR+E
Subjt:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE

Query:  HLLMEEIR
        HLLMEEIR
Subjt:  HLLMEEIR

A0A6J1IPN8 uncharacterized protein LOC111478320

9.0e-35

78.7

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Query:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE
        M DF+GK NIEE+LSYG+DL+ALL DQ DVQTLNQCLEH K LQS C DDFSNV SSVQ DYEKKIEACRQKTEEAKA TVAD E+D+LE+EL EEL K 
Subjt:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE

Query:  HLLMEEIR
        +LLMEEIR
Subjt:  HLLMEEIR

SwissProt top hits

e value

%identity

Alignment

Q67XT3 Kinetochore protein SPC24 homolog

3.2e-13

39.81

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Query:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE
        MG+ S   +IE+L+SYG+DLI LL  +     ++Q  E  KAL   C +DF+ +  S++ D + K+ AC++KTEEA +   A+ E++ L++EL+EE+ +E
Subjt:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE

Query:  HLLMEEIR
          L +E+R
Subjt:  HLLMEEIR

Arabidopsis top hits

e value

%identity

Alignment

AT3G08880.1 unknown protein

2.3e-14

39.81

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Query:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE
        MG+ S   +IE+L+SYG+DLI LL  +     ++Q  E  KAL   C +DF+ +  S++ D + K+ AC++KTEEA +   A+ E++ L++EL+EE+ +E
Subjt:  MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKE

Query:  HLLMEEIR
          L +E+R
Subjt:  HLLMEEIR

AT5G01570.1 unknown protein

1.3e-14

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Query:  NIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR
        N E ++S+G++LI +L D+K    L Q LE ++A+   CD+DF  +H S+Q D +KK++ C++KT+EA +    + E++ L++EL+EEL  E  L EE+R
Subjt:  NIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR

Sequences

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CDS sequence

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ATGGGAGATTTCTCAGGAAAGATCAACATTGAGGAGTTGTTATCCTATGGCAATGATCTGATTGCACTCTTGAAGGACCAAAAGGACGTCCAAACCTTGAATCAATGTCT
CGAACATGTCAAGGCTCTTCAATCTTTTTGCGATGATGATTTCAGTAATGTTCACAGTTCAGTTCAAGCAGATTATGAGAAGAAAATCGAGGCATGCCGGCAGAAAACGG
AGGAGGCGAAAGCGAGAACTGTTGCAGATGCTGAAATGGATGTTCTCGAAGAGGAGCTCGAAGAGGAACTTAGGAAAGAACATTTGCTCATGGAGGAGATTAGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MGDFSGKINIEELLSYGNDLIALLKDQKDVQTLNQCLEHVKALQSFCDDDFSNVHSSVQADYEKKIEACRQKTEEAKARTVADAEMDVLEEELEEELRKEHLLMEEIR

MS013909 (gene) of Bitter gourd (TR) v1 genome