; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013911 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013911
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHTH myb-type domain-containing protein
Genome locationscaffold607:794210..795204
RNA-Seq ExpressionMS013911
SyntenyMS013911
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR006447 - Myb domain, plants
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044848 - PHR1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595411.1 putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. sororia]5.1e-5777.99Show/hide
Query:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN
        AA ECSN+SRS+ ++    +Q ELGNEGSSSNSTIEEN   D  QK KP+VRPYVRSKLPRLRWTPDLH RF+HAV+ LGGQ+NATPKLVLQLMNIKGL+
Subjt:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN

Query:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR
        IAHVKSHLQMYRSKK NE   VADQR++M++T DRNIFTVSQIPMFQR+NQTYPSNIFR
Subjt:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR

KAG7027421.1 putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. argyrosperma]5.1e-5777.99Show/hide
Query:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN
        AA ECSN+SRS+ ++    +Q ELGNEGSSSNSTIEEN   D  QK KP+VRPYVRSKLPRLRWTPDLH RF+HAV+ LGGQ+NATPKLVLQLMNIKGL+
Subjt:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN

Query:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR
        IAHVKSHLQMYRSKK NE   VADQR++M++T DRNIFTVSQIPMFQR+NQTYPSNIFR
Subjt:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR

XP_022144064.1 uncharacterized protein LOC111013845 [Momordica charantia]1.2e-82100Show/hide
Query:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN
        AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN
Subjt:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN

Query:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR
        IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR
Subjt:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR

XP_022931927.1 putative Myb family transcription factor At1g14600 [Cucurbita moschata]5.1e-5777.99Show/hide
Query:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN
        AA ECSN+SRS+ ++    +Q ELGNEGSSSNSTIEEN   D  QK KP+VRPYVRSKLPRLRWTPDLH RF+HAV+ LGGQ+NATPKLVLQLMNIKGL+
Subjt:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN

Query:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR
        IAHVKSHLQMYRSKK NE   VADQR++M++T DRNIFTVSQIPMFQR+NQTYPSNIFR
Subjt:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR

XP_023518589.1 putative Myb family transcription factor At1g14600 [Cucurbita pepo subsp. pepo]5.1e-5777.99Show/hide
Query:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN
        AA ECSN+SRS+ ++    +Q ELGNEGSSSNSTIEEN   D  QK KP+VRPYVRSKLPRLRWTPDLH RF+HAV+ LGGQ+NATPKLVLQLMNIKGL+
Subjt:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN

Query:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR
        IAHVKSHLQMYRSKK NE   VADQR++M++T DRNIFTVSQIPMFQR+NQTYPSNIFR
Subjt:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR

TrEMBL top hitse value%identityAlignment
A0A1S3CL07 probable transcription factor KAN4 isoform X26.1e-5675.3Show/hide
Query:  ECSNRSRSEDDEKN------CNNQRELGNEGSSSNSTIEENNTHDHNQ-KNK-PSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMN
        ECSN   S+ D+ N       ++  E GNEGSSSNSTIEENN +DH+Q K K P+VRPYVRSKLPRLRWTPDLH RFVHAVERLGGQENATPKLVLQLMN
Subjt:  ECSNRSRSEDDEKN------CNNQRELGNEGSSSNSTIEENNTHDHNQ-KNK-PSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMN

Query:  IKGLNIAHVKSHLQMYRSKKINEHGQVADQRLVMAET--GDRNIFTVSQIPMFQRYNQTYPSNIFR
        IKGL+IAHVKSHLQMYRSKK NE GQV DQR++MAE+  GDRNIF VSQIPMFQRYN +Y SN+FR
Subjt:  IKGLNIAHVKSHLQMYRSKKINEHGQVADQRLVMAET--GDRNIFTVSQIPMFQRYNQTYPSNIFR

A0A6J1CR72 uncharacterized protein LOC1110138455.8e-83100Show/hide
Query:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN
        AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN
Subjt:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN

Query:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR
        IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR
Subjt:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR

A0A6J1EV69 putative Myb family transcription factor At1g146002.5e-5777.99Show/hide
Query:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN
        AA ECSN+SRS+ ++    +Q ELGNEGSSSNSTIEEN   D  QK KP+VRPYVRSKLPRLRWTPDLH RF+HAV+ LGGQ+NATPKLVLQLMNIKGL+
Subjt:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN

Query:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR
        IAHVKSHLQMYRSKK NE   VADQR++M++T DRNIFTVSQIPMFQR+NQTYPSNIFR
Subjt:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR

A0A6J1HNJ5 putative Myb family transcription factor At1g14600 isoform X22.7e-5675.47Show/hide
Query:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN
        AA  CSN+SRS+ ++    +Q ELGNEGSSSNSTIEEN+     Q+ KP+VRPYVRSKLPRLRWTPDLH RF+HAV+ LGGQ+NATPKLVLQLMNIKGL+
Subjt:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN

Query:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR
        IAHVKSHLQMYRSKK NE   VADQR++M++T D NIFTVSQIPMFQR+NQTYPSNIFR
Subjt:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR

A0A6J1HPW1 putative Myb family transcription factor At1g14600 isoform X12.7e-5675.47Show/hide
Query:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN
        AA  CSN+SRS+ ++    +Q ELGNEGSSSNSTIEEN+     Q+ KP+VRPYVRSKLPRLRWTPDLH RF+HAV+ LGGQ+NATPKLVLQLMNIKGL+
Subjt:  AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLN

Query:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR
        IAHVKSHLQMYRSKK NE   VADQR++M++T D NIFTVSQIPMFQR+NQTYPSNIFR
Subjt:  IAHVKSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR

SwissProt top hitse value%identityAlignment
A0A0P0X0C0 Myb family transcription factor MPH13.0e-2057.5Show/hide
Query:  VRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHGQVADQRLVMA
        VR Y RS++PR+RWT ++H +FV AVE LGGQ+ ATPK +LQLM +KG++I+H+KSHLQMYRS   N +  V+ Q+L  A
Subjt:  VRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHGQVADQRLVMA

A3AWH5 Myb family transcription factor MOF15.5e-2266.2Show/hide
Query:  SVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHG
        +VR Y+RSK+PRLRWT +LH  FV A+E LGGQ+ ATPKL+LQLM +KGL I+HVKSHLQMYR  ++  HG
Subjt:  SVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHG

Q700D9 Putative Myb family transcription factor At1g146002.5e-2269.01Show/hide
Query:  VRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHGQ
        VRPYVRS +PRLRWTP+LH  FVHAV+ LGGQ  ATPKLVL++M++KGL I+HVKSHLQMYR  +I   G+
Subjt:  VRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHGQ

Q93WJ9 Transcription repressor KAN11.2e-1649Show/hide
Query:  NNQRELGNEGSSSNSTIEENNTHDH---NQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKK
        ++  + G  GSS +S+   +N H H     +  P +      + PR+RWT  LH RFVHAVE LGG E ATPK VL+LM++K L +AHVKSHLQMYR+ K
Subjt:  NNQRELGNEGSSSNSTIEENNTHDH---NQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKK

Q9C616 Probable transcription factor KAN23.7e-1846.09Show/hide
Query:  GNEGSSSNSTIEENNTHDHNQKNKPSVR-----PYVRS-KLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINE
        GN  S + S++   N H+H+ +     R     P  RS + PR+RWT  LH RFVHAVE LGG E ATPK VL+LM++K L +AHVKSHLQMYR+ K  +
Subjt:  GNEGSSSNSTIEENNTHDHNQKNKPSVR-----PYVRS-KLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINE

Query:  HGQVADQRLVMAETG
            +  +  + E G
Subjt:  HGQVADQRLVMAETG

Arabidopsis top hitse value%identityAlignment
AT1G14600.1 Homeodomain-like superfamily protein1.8e-2369.01Show/hide
Query:  VRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHGQ
        VRPYVRS +PRLRWTP+LH  FVHAV+ LGGQ  ATPKLVL++M++KGL I+HVKSHLQMYR  +I   G+
Subjt:  VRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKINEHGQ

AT2G02060.1 Homeodomain-like superfamily protein1.5e-2260.92Show/hide
Query:  NEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYR
        + G + N +   N  H         VRPYVRS +PRLRWTPDLH  FVHAVE LGGQ  ATPKLVL++M++KGL I+HVKSHLQMYR
Subjt:  NEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYR

AT2G38300.1 myb-like HTH transcriptional regulator family protein8.7e-3958.55Show/hide
Query:  SNRSRSEDDEKNCNNQRELGNEGS-SSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHV
        +NR   E++E+    + E G E   SSNST+EE++        K  VRPYVRSK+PRLRWTPDLH RFV AVERLGGQE ATPKLV Q+MNIKGL+IAHV
Subjt:  SNRSRSEDDEKNCNNQRELGNEGS-SSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHV

Query:  KSHLQMYRSKKINEHGQ-VADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPS
        KSHLQMYRSKKI++ GQ +A  + +   + DRNI+ +SQ+PMF+ YN  + S
Subjt:  KSHLQMYRSKKINEHGQ-VADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPS

AT2G40260.1 Homeodomain-like superfamily protein1.6e-3252.29Show/hide
Query:  NRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDH--NQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHV
        ++   +D+E   + +   G++  SSNS  EE+ +H H  N+KN  SVRPY RSK PRLRWTP+LH  F+ AVERLGG + ATPKLVLQLMN+KGL+IAHV
Subjt:  NRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDH--NQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHV

Query:  KSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNI
        KSHLQMYRSKK +E  +  DQ     E G    + +SQ+PM Q ++Q   S++
Subjt:  KSHLQMYRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNI

AT2G42660.1 Homeodomain-like superfamily protein1.2e-2457.58Show/hide
Query:  CNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKI
        C+   +L  E +   +  EE++  D +Q    +VR Y+RS +PRLRWTPDLH  FV AV+RLGG + ATPKLVL++MN+KGL+IAHVKSHLQMYRSKK+
Subjt:  CNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQMYRSKKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCAGCAGTAGAATGTTCAAACAGAAGTAGGAGTGAAGATGATGAGAAGAATTGTAATAATCAGAGGGAATTAGGAAACGAAGGGAGCTCCAGCAACAGCACCATTGAAGA
GAATAATACTCACGATCATAATCAGAAGAATAAGCCGAGCGTGCGGCCGTACGTTAGATCCAAACTCCCCCGACTCCGGTGGACGCCTGATCTCCATCACCGTTTCGTTC
ATGCTGTCGAAAGACTAGGCGGTCAAGAAAATGCTACCCCTAAGTTGGTTCTTCAGTTAATGAACATCAAAGGACTGAACATCGCCCATGTAAAGAGCCACCTTCAGATG
TACAGAAGCAAGAAGATCAACGAACATGGCCAAGTGGCGGATCAAAGGCTTGTGATGGCAGAAACTGGCGATCGCAACATATTTACTGTCAGCCAAATCCCTATGTTCCA
ACGCTATAACCAAACCTACCCCTCCAATATTTTCCGG
mRNA sequenceShow/hide mRNA sequence
GCAGCAGTAGAATGTTCAAACAGAAGTAGGAGTGAAGATGATGAGAAGAATTGTAATAATCAGAGGGAATTAGGAAACGAAGGGAGCTCCAGCAACAGCACCATTGAAGA
GAATAATACTCACGATCATAATCAGAAGAATAAGCCGAGCGTGCGGCCGTACGTTAGATCCAAACTCCCCCGACTCCGGTGGACGCCTGATCTCCATCACCGTTTCGTTC
ATGCTGTCGAAAGACTAGGCGGTCAAGAAAATGCTACCCCTAAGTTGGTTCTTCAGTTAATGAACATCAAAGGACTGAACATCGCCCATGTAAAGAGCCACCTTCAGATG
TACAGAAGCAAGAAGATCAACGAACATGGCCAAGTGGCGGATCAAAGGCTTGTGATGGCAGAAACTGGCGATCGCAACATATTTACTGTCAGCCAAATCCCTATGTTCCA
ACGCTATAACCAAACCTACCCCTCCAATATTTTCCGG
Protein sequenceShow/hide protein sequence
AAVECSNRSRSEDDEKNCNNQRELGNEGSSSNSTIEENNTHDHNQKNKPSVRPYVRSKLPRLRWTPDLHHRFVHAVERLGGQENATPKLVLQLMNIKGLNIAHVKSHLQM
YRSKKINEHGQVADQRLVMAETGDRNIFTVSQIPMFQRYNQTYPSNIFR