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MS013932 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013932
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHigh mobility group B protein
Genome locationscaffold607:1018589..1019799
RNA-Seq ExpressionMS013932
SyntenyMS013932
Gene Ontology termsGO:0006333 - chromatin assembly or disassembly (biological process)
GO:0000785 - chromatin (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003682 - chromatin binding (molecular function)
GO:0030527 - structural constituent of chromatin (molecular function)
InterPro domainsIPR009071 - High mobility group box domain
IPR031061 - High mobility group protein HMGB, plant
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031875.1 high mobility group B protein 1 [Cucumis melo var. makuwa]3.8e-5593.7Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHA
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYDSKK
        EKAPYEAKAAK+KAEYEKLMRAYDSKK
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYDSKK

XP_008449957.1 PREDICTED: high mobility group B protein 1 [Cucumis melo]3.8e-5593.7Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHA
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYDSKK
        EKAPYEAKAAK+KAEYEKLMRAYDSKK
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYDSKK

XP_011653690.1 high mobility group B protein 1 [Cucumis sativus]8.5e-5593.7Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK  KRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHA
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYDSKK
        EKAPYEAKAAK+KAEYEKLMRAYDSKK
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYDSKK

XP_022151579.1 high mobility group B protein 1 [Momordica charantia]9.7e-59100Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYDSKK
        EKAPYEAKAAKKKAEYEKLMRAYDSKK
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYDSKK

XP_038883904.1 high mobility group B protein 1 [Benincasa hispida]5.5e-5492.13Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MKGSKGKGTSRVSKEALKPVDDRKVGKRKAA+KADK   RPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHA
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYDSKK
        EKAPYEA+AAK+KAEYEKLM+AYDSKK
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYDSKK

TrEMBL top hitse value%identityAlignment
A0A0A0L1B2 HMG box domain-containing protein4.1e-5593.7Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK  KRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHA
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYDSKK
        EKAPYEAKAAK+KAEYEKLMRAYDSKK
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYDSKK

A0A1S3BML2 high mobility group B protein 11.8e-5593.7Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHA
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYDSKK
        EKAPYEAKAAK+KAEYEKLMRAYDSKK
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYDSKK

A0A5A7SRU9 High mobility group B protein 11.8e-5593.7Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MKGSKGKGTSRVSKEALKPVDDRKVGKRKA +KADK +KRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKE+KR+NP+VKAVSAVGKAGGEKWKSLSHA
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYDSKK
        EKAPYEAKAAK+KAEYEKLMRAYDSKK
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYDSKK

A0A6J1DBK9 high mobility group B protein 14.7e-59100Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYDSKK
        EKAPYEAKAAKKKAEYEKLMRAYDSKK
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYDSKK

A0A6J1ISM4 high mobility group B protein 1-like3.6e-5188.19Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MKG KGKGTSRVSKEALKPVDDRKVGKRKAAIKADK  KRPTKK+LKA KDPNKPKRPPSAFFVFLEEFR+E+KR+NP+VKAVSAVGKAGG++W+SL+H 
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYDSKK
        EKAPYEAKAAK+KAEYEKLMRAYDSKK
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYDSKK

SwissProt top hitse value%identityAlignment
O49595 High mobility group B protein 12.3e-3973.39Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MK +KGK   + +KEALKPVDDRKVGKRKA   A+K +KR T+K+ KAKKDPNKPKR PSAFFVFLE+FR  FK++NP+VKAVSAVGKAGG+KWKS+S A
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYD
        EKAPYE KAAK+KAEYEK M AY+
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYD

O49596 High mobility group B protein 21.2e-2250.79Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MKG+K K  +R SK ++     +  G+ KA                 A KDPNKPKRP SAFFVF+E+FR+ FK++NP  K+V+ VGKA G+KWKSLS +
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYDSK
        EKAPY AKA K+K EYEK ++AY+ K
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYDSK

P26585 HMG1/2-like protein1.2e-2457.48Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MKG K K  S+ +   L       V K+ AA KA    ++P  K  KA KDPNKPKRPPSAFFVF+EEFRK F +++P  KAVSAVGKA G KWK++S A
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYDSKK
        EKAPY AK+ K+K EYEK MRAY+ K+
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYDSKK

P40620 HMG1/2-like protein6.8e-2353.97Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MKG K KG S+ ++  L       V K+ AA  A K  K+P K   K  KDPNKPKRPPSAFFVF+ +FR+++K+D+P+ K+V+AVGKA GE+WKSLS  
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYDSK
        EKAPY  +A KKK EYE  ++AY+ K
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYDSK

P93047 High mobility group B protein 35.2e-2360.95Show/hide
Query:  KVGKRKAAIKADKNS--KRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLMR
        K  K KA  ++ K S  K+P K    A KDPNKPKRP SAFFVF+E+FR  +K ++P  K+V+AVGKAGGEKWKSLS +EKAPY AKA K+K EYEK M+
Subjt:  KVGKRKAAIKADKNS--KRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLMR

Query:  AYDSK
        AY+ K
Subjt:  AYDSK

Arabidopsis top hitse value%identityAlignment
AT1G20696.1 high mobility group B33.7e-2460.95Show/hide
Query:  KVGKRKAAIKADKNS--KRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLMR
        K  K KA  ++ K S  K+P K    A KDPNKPKRP SAFFVF+E+FR  +K ++P  K+V+AVGKAGGEKWKSLS +EKAPY AKA K+K EYEK M+
Subjt:  KVGKRKAAIKADKNS--KRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAAKKKAEYEKLMR

Query:  AYDSK
        AY+ K
Subjt:  AYDSK

AT3G51880.1 high mobility group B11.7e-4073.39Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MK +KGK   + +KEALKPVDDRKVGKRKA   A+K +KR T+K+ KAKKDPNKPKR PSAFFVFLE+FR  FK++NP+VKAVSAVGKAGG+KWKS+S A
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYD
        EKAPYE KAAK+KAEYEK M AY+
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYD

AT3G51880.2 high mobility group B11.7e-4073.39Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MK +KGK   + +KEALKPVDDRKVGKRKA   A+K +KR T+K+ KAKKDPNKPKR PSAFFVFLE+FR  FK++NP+VKAVSAVGKAGG+KWKS+S A
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYD
        EKAPYE KAAK+KAEYEK M AY+
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYD

AT3G51880.3 high mobility group B11.7e-4073.39Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MK +KGK   + +KEALKPVDDRKVGKRKA   A+K +KR T+K+ KAKKDPNKPKR PSAFFVFLE+FR  FK++NP+VKAVSAVGKAGG+KWKS+S A
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYD
        EKAPYE KAAK+KAEYEK M AY+
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYD

AT3G51880.4 high mobility group B11.7e-4073.39Show/hide
Query:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA
        MK +KGK   + +KEALKPVDDRKVGKRKA   A+K +KR T+K+ KAKKDPNKPKR PSAFFVFLE+FR  FK++NP+VKAVSAVGKAGG+KWKS+S A
Subjt:  MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHA

Query:  EKAPYEAKAAKKKAEYEKLMRAYD
        EKAPYE KAAK+KAEYEK M AY+
Subjt:  EKAPYEAKAAKKKAEYEKLMRAYD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTCTCGAAAGAAGCTTTGAAGCCAGTGGATGATAGAAAGGTTGGGAAGCGAAAGGCTGCCATTAAGGCTGACAAGAA
TAGCAAACGACCAACAAAGAAGGATTTGAAAGCCAAGAAAGATCCCAACAAACCTAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCCTAGAGGAGTTCAGAAAAGAGTTCA
AAAGGGACAATCCTCATGTGAAGGCAGTATCTGCAGTTGGAAAAGCTGGAGGAGAGAAGTGGAAATCCTTGAGTCATGCTGAAAAAGCACCCTACGAAGCCAAGGCGGCT
AAGAAGAAGGCTGAATATGAAAAGCTTATGAGGGCATATGACAGCAAGAAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGGTCCAAGGGTAAGGGAACATCAAGGGTCTCGAAAGAAGCTTTGAAGCCAGTGGATGATAGAAAGGTTGGGAAGCGAAAGGCTGCCATTAAGGCTGACAAGAA
TAGCAAACGACCAACAAAGAAGGATTTGAAAGCCAAGAAAGATCCCAACAAACCTAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCCTAGAGGAGTTCAGAAAAGAGTTCA
AAAGGGACAATCCTCATGTGAAGGCAGTATCTGCAGTTGGAAAAGCTGGAGGAGAGAAGTGGAAATCCTTGAGTCATGCTGAAAAAGCACCCTACGAAGCCAAGGCGGCT
AAGAAGAAGGCTGAATATGAAAAGCTTATGAGGGCATATGACAGCAAGAAG
Protein sequenceShow/hide protein sequence
MKGSKGKGTSRVSKEALKPVDDRKVGKRKAAIKADKNSKRPTKKDLKAKKDPNKPKRPPSAFFVFLEEFRKEFKRDNPHVKAVSAVGKAGGEKWKSLSHAEKAPYEAKAA
KKKAEYEKLMRAYDSKK