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MS013935 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013935
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description30S ribosomal protein S31, chloroplastic
Genome locationscaffold607:1061352..1061929
RNA-Seq ExpressionMS013935
SyntenyMS013935
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR030826 - 30S ribosomal protein
IPR044695 - 30S ribosomal protein S31, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008449316.1 PREDICTED: 30S ribosomal protein S31, chloroplastic [Cucumis melo]1.1e-4888.43Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPP
        M SLPFGLLQA SQSP+L+P +FSFSKSETLGTSLRA STASLA S  SSPSS+PAVYCGRGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVPTPP+PP
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPP

Query:  RKDKFEDDEKIKIEIDESLFA
        RKDKF+DDEKIKIEIDESLFA
Subjt:  RKDKFEDDEKIKIEIDESLFA

XP_022151467.1 30S ribosomal protein S31, chloroplastic [Momordica charantia]1.6e-5599.17Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPR
        MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPR
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPR

Query:  KDKFEDDEKIKIEIDESLFA
        KDKFEDDEKIKIEID+SLFA
Subjt:  KDKFEDDEKIKIEIDESLFA

XP_022931892.1 30S ribosomal protein S31, chloroplastic-like [Cucurbita moschata]9.5e-4888.33Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPR
        MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST    TSATSSPSS+PAVYCGRGDKKTEKGKRF HS+GNARPRDKTKGRGTPRVPTPP+PPR
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPR

Query:  KDKFEDDEKIKIEIDESLFA
        KDKF+DDEKIKIEIDESLF+
Subjt:  KDKFEDDEKIKIEIDESLFA

XP_023517799.1 30S ribosomal protein S31, chloroplastic [Cucurbita pepo subsp. pepo]4.7e-4787.5Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPR
        MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST     SATSSPSS+PAVYCGRGDKKTEKGKRF HS+GNARPRDKTKGRGTPRVPTPP+PPR
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPR

Query:  KDKFEDDEKIKIEIDESLFA
        KDKF+DDEKIKIEIDESLF+
Subjt:  KDKFEDDEKIKIEIDESLFA

XP_038882305.1 30S ribosomal protein S31, chloroplastic [Benincasa hispida]4.9e-5295.04Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPP
        MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA STASLATS TSSPSS+PAVYCGRGDKKTEKGKRFN SYGNARPR+KTKGRGTPRVPTPP+PP
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPP

Query:  RKDKFEDDEKIKIEIDESLFA
        RKDKFEDDEKIKIEIDESLFA
Subjt:  RKDKFEDDEKIKIEIDESLFA

TrEMBL top hitse value%identityAlignment
A0A1S3BL51 30S ribosomal protein S31, chloroplastic5.4e-4988.43Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPP
        M SLPFGLLQA SQSP+L+P +FSFSKSETLGTSLRA STASLA S  SSPSS+PAVYCGRGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVPTPP+PP
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPP

Query:  RKDKFEDDEKIKIEIDESLFA
        RKDKF+DDEKIKIEIDESLFA
Subjt:  RKDKFEDDEKIKIEIDESLFA

A0A5A7TU27 30S ribosomal protein S315.4e-4988.43Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPP
        M SLPFGLLQA SQSP+L+P +FSFSKSETLGTSLRA STASLA S  SSPSS+PAVYCGRGDKKTE+GKRFNHSYGNARPRDKTKGRGTPRVPTPP+PP
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRA-STASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPP

Query:  RKDKFEDDEKIKIEIDESLFA
        RKDKF+DDEKIKIEIDESLFA
Subjt:  RKDKFEDDEKIKIEIDESLFA

A0A6J1DDL3 30S ribosomal protein S31, chloroplastic7.8e-5699.17Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPR
        MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPR
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPR

Query:  KDKFEDDEKIKIEIDESLFA
        KDKFEDDEKIKIEID+SLFA
Subjt:  KDKFEDDEKIKIEIDESLFA

A0A6J1EV33 30S ribosomal protein S31, chloroplastic-like4.6e-4888.33Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPR
        MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST    TSATSSPSS+PAVYCGRGDKKTEKGKRF HS+GNARPRDKTKGRGTPRVPTPP+PPR
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPR

Query:  KDKFEDDEKIKIEIDESLFA
        KDKF+DDEKIKIEIDESLF+
Subjt:  KDKFEDDEKIKIEIDESLFA

A0A6J1HRX4 30S ribosomal protein S31, chloroplastic4.6e-4888.33Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPR
        MASLPFGLLQA  QSPTLSPR FSFSKSETLGTSLR ST    TSATSSPSS+PAVYCGRGDKKTEKGKRF HS+GNARPRDKTKGRGTPRVPTPP+PPR
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPR

Query:  KDKFEDDEKIKIEIDESLFA
        KDKF+DDEKIKIEIDESLF+
Subjt:  KDKFEDDEKIKIEIDESLFA

SwissProt top hitse value%identityAlignment
O80439 30S ribosomal protein S31, chloroplastic2.7e-2972.16Show/hide
Query:  SFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDESLFA
        S S SET G SL   T   + S TSS SS+P VYCGRGD+KT KGKRFNHS+GNARPR+K+KGRG  RVP PPAPPRKDKFE+DEKIKI+IDESLF+
Subjt:  SFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDESLFA

P47909 30S ribosomal protein S31, mitochondrial1.0e-0460.87Show/hide
Query:  AVYCGRGDKKTEKGKRFNHSYGNARP-RDKTKGRGTPRVPTPPAPP
        AV CGRGDKKT++GKRF  SYGNARP R+K   R   RV  P + P
Subjt:  AVYCGRGDKKTEKGKRFNHSYGNARP-RDKTKGRGTPRVPTPPAPP

P47910 30S ribosomal protein S31, chloroplastic4.2e-1452.04Show/hide
Query:  MASLPFGLLQAASQSPTLSPRFFSFSKSETL-GTSLRA-STASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPP
        MASL  G    A  S +     FSFS S+++ G SL +  T SL++S ++SP ++P +YCGRGD+KT KGKRFNHS+GNARP++K KGRG P+ P  P
Subjt:  MASLPFGLLQAASQSPTLSPRFFSFSKSETL-GTSLRA-STASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPP

Arabidopsis top hitse value%identityAlignment
AT2G21290.1 unknown protein6.9e-0451.92Show/hide
Query:  SETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNAR
        S  L  S R S+ S A +A   P+      CGRGDKKT+KGKRF  SYGN+R
Subjt:  SETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNAR

AT2G38140.1 plastid-specific ribosomal protein 41.9e-3072.16Show/hide
Query:  SFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDESLFA
        S S SET G SL   T   + S TSS SS+P VYCGRGD+KT KGKRFNHS+GNARPR+K+KGRG  RVP PPAPPRKDKFE+DEKIKI+IDESLF+
Subjt:  SFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKIKIEIDESLFA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCACTTCCTTTCGGGCTTCTTCAAGCCGCTTCTCAATCTCCAACTCTTTCTCCTCGATTTTTCTCTTTCTCCAAATCCGAAACCCTAGGAACTTCTCTGCGTGC
TTCTACTGCTTCTCTTGCGACCTCTGCAACTTCGTCTCCTTCTTCGGTTCCTGCTGTGTATTGTGGCAGAGGCGATAAGAAAACGGAGAAAGGAAAGCGGTTCAATCACT
CTTACGGAAATGCAAGGCCTCGGGATAAGACGAAAGGGAGAGGGACTCCGAGAGTACCTACTCCGCCTGCTCCGCCTAGGAAAGATAAATTTGAGGATGATGAGAAAATT
AAGATCGAGATTGACGAGTCTCTGTTCGCT
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCACTTCCTTTCGGGCTTCTTCAAGCCGCTTCTCAATCTCCAACTCTTTCTCCTCGATTTTTCTCTTTCTCCAAATCCGAAACCCTAGGAACTTCTCTGCGTGC
TTCTACTGCTTCTCTTGCGACCTCTGCAACTTCGTCTCCTTCTTCGGTTCCTGCTGTGTATTGTGGCAGAGGCGATAAGAAAACGGAGAAAGGAAAGCGGTTCAATCACT
CTTACGGAAATGCAAGGCCTCGGGATAAGACGAAAGGGAGAGGGACTCCGAGAGTACCTACTCCGCCTGCTCCGCCTAGGAAAGATAAATTTGAGGATGATGAGAAAATT
AAGATCGAGATTGACGAGTCTCTGTTCGCT
Protein sequenceShow/hide protein sequence
MASLPFGLLQAASQSPTLSPRFFSFSKSETLGTSLRASTASLATSATSSPSSVPAVYCGRGDKKTEKGKRFNHSYGNARPRDKTKGRGTPRVPTPPAPPRKDKFEDDEKI
KIEIDESLFA