; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013942 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013942
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionChlorophyll a-b binding protein, chloroplastic
Genome locationscaffold607:1100140..1101726
RNA-Seq ExpressionMS013942
SyntenyMS013942
Gene Ontology termsGO:0009416 - response to light stimulus (biological process)
GO:0009768 - photosynthesis, light harvesting in photosystem I (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009522 - photosystem I (cellular component)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
InterPro domainsIPR001344 - Chlorophyll A-B binding protein, plant and chromista
IPR022796 - Chlorophyll A-B binding protein
IPR023329 - Chlorophyll a/b binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147887.1 chlorophyll a-b binding protein CP29.1, chloroplastic [Cucumis sativus]2.8e-15194.7Show/hide
Query:  ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA
        ATAAATSSF+GTRL ++ PSSGRVQARF FGKKK+ PKK  SSK ISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA
Subjt:  ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA

Query:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR
        GDIIGTRFE+++VKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR
Subjt:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR

Query:  NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
        NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID+FSS
Subjt:  NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS

XP_008449241.1 PREDICTED: chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucumis melo]2.8e-15194.7Show/hide
Query:  ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA
        ATAAATSSFIGTRL ++ PSSGRVQARF FGKKK+ PKK  SSK ISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA
Subjt:  ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA

Query:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR
        GDIIGTRFE+++VKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLVIGYIEFQR
Subjt:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR

Query:  NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
        NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID+FSS
Subjt:  NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS

XP_022151483.1 chlorophyll a-b binding protein CP29.1, chloroplastic [Momordica charantia]5.7e-160100Show/hide
Query:  TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAG
        TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAG
Subjt:  TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAG

Query:  DIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRN
        DIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRN
Subjt:  DIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRN

Query:  AELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
        AELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
Subjt:  AELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS

XP_022978220.1 chlorophyll a-b binding protein CP29.1, chloroplastic-like [Cucurbita maxima]8.2e-15194.72Show/hide
Query:  TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNV
        TATAAATSSFIGTRL DVRPSSGRVQARF FGKKK   KK  SSK ISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNV
Subjt:  TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNV

Query:  AGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQ
        AGDIIGTRFEN+DVKSTPFQPY+EVFGLQRFRECELIHGRWAMLATLGAL+VE LTG+TWQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLVIGYIEFQ
Subjt:  AGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQ

Query:  RNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
        RNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID+FSS
Subjt:  RNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS

XP_038882769.1 chlorophyll a-b binding protein CP29.1, chloroplastic-like [Benincasa hispida]2.8e-15194.7Show/hide
Query:  ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA
        ATAAATSSFIGTRL ++RP SGRVQARF FGKKK+ PKK  SSK ISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA
Subjt:  ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA

Query:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR
        GDIIGTRFE+++VKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR
Subjt:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR

Query:  NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
        NAELDPEKRLYPGGKFFDPLGLAEDPEKK VLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID+FSS
Subjt:  NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS

TrEMBL top hitse value%identityAlignment
A0A0A0KXI3 Chlorophyll a-b binding protein, chloroplastic1.4e-15194.7Show/hide
Query:  ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA
        ATAAATSSF+GTRL ++ PSSGRVQARF FGKKK+ PKK  SSK ISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA
Subjt:  ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA

Query:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR
        GDIIGTRFE+++VKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR
Subjt:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR

Query:  NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
        NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID+FSS
Subjt:  NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS

A0A1S3BMH8 Chlorophyll a-b binding protein, chloroplastic1.4e-15194.7Show/hide
Query:  ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA
        ATAAATSSFIGTRL ++ PSSGRVQARF FGKKK+ PKK  SSK ISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA
Subjt:  ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA

Query:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR
        GDIIGTRFE+++VKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLVIGYIEFQR
Subjt:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR

Query:  NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
        NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID+FSS
Subjt:  NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS

A0A5D3BBB3 Chlorophyll a-b binding protein, chloroplastic1.4e-15194.7Show/hide
Query:  ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA
        ATAAATSSFIGTRL ++ PSSGRVQARF FGKKK+ PKK  SSK ISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA
Subjt:  ATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA

Query:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR
        GDIIGTRFE+++VKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLVIGYIEFQR
Subjt:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR

Query:  NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
        NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID+FSS
Subjt:  NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS

A0A6J1DCA5 Chlorophyll a-b binding protein, chloroplastic2.8e-160100Show/hide
Query:  TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAG
        TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAG
Subjt:  TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAG

Query:  DIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRN
        DIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRN
Subjt:  DIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRN

Query:  AELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
        AELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
Subjt:  AELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS

A0A6J1IPG0 Chlorophyll a-b binding protein, chloroplastic4.0e-15194.72Show/hide
Query:  TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNV
        TATAAATSSFIGTRL DVRPSSGRVQARF FGKKK   KK  SSK ISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNV
Subjt:  TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKK--SSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNV

Query:  AGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQ
        AGDIIGTRFEN+DVKSTPFQPY+EVFGLQRFRECELIHGRWAMLATLGAL+VE LTG+TWQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLVIGYIEFQ
Subjt:  AGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQ

Query:  RNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
        RNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIID+FSS
Subjt:  RNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS

SwissProt top hitse value%identityAlignment
Q01667 Chlorophyll a-b binding protein 6, chloroplastic1.2e-3841.63Show/hide
Query:  WFPGAKAPEWLDGSLVGDYGFDPFGLGK-PAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALS
        W PG   P +LDGS  GD+GFDP GLG+ PA                                             L+R++E ELIH RWAMLA  G L 
Subjt:  WFPGAKAPEWLDGSLVGDYGFDPFGLGK-PAEYLQYDLDSLDQNLAKNVAGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALS

Query:  VEWLTGVTWQDAGKVELVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAF
         E L    W  A +   + G  ++YLG P+P+ ++ T++ IE L I ++E QR+ E DPEK+ YPGG  FDPLG ++DP+K   L++ EIK+ RLA++AF
Subjt:  VEWLTGVTWQDAGKVELVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAF

Query:  LGFAV-QAAVTGKGPLNNWATHLSDPLHTTIID
        +GF V Q+A  G GPL N ATHL+DP H  I D
Subjt:  LGFAV-QAAVTGKGPLNNWATHLSDPLHTTIID

Q07473 Chlorophyll a-b binding protein CP29.1, chloroplastic7.5e-13984.56Show/hide
Query:  TATAAATSSFIGTRL-PDVRPSSGRVQARFSFGKKKTAPKKSSKQ--ISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKN
        +A AAA SS +GTR+ P + P SGR  A F FGKKK APKKS+K+   +DRPLW+PGA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D+DSLDQNLAKN
Subjt:  TATAAATSSFIGTRL-PDVRPSSGRVQARFSFGKKKTAPKKSSKQ--ISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKN

Query:  VAGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEF
        +AGD+IGTR E +D KSTPFQPY+EVFG+QRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEF
Subjt:  VAGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEF

Query:  QRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
        QRNAELD EKRLYPGGKFFDPLGLA DPEK A LQLAEIKHARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHTTIID+FSS
Subjt:  QRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS

Q93WD2 Chlorophyll a-b binding protein CP299.4e-6551.7Show/hide
Query:  PSSGRVQARFSFGKKKTAPKKSSKQISDR----------------PLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDII
        P+    Q +      K APK ++K+++                   LW P    PEWLDGSL GD GFDP GL KP+E++   +D  DQN AKN  G + 
Subjt:  PSSGRVQARFSFGKKKTAPKKSSKQISDR----------------PLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDII

Query:  GTRFENSDVKSTP--FQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNA
               D  S+     PY+EVFGL RFRECELIHGRWAMLA LGAL  E  TGV+W +AGKVEL +G+SY G  LPFSIT LIWIEV+++G  EF RN+
Subjt:  GTRFENSDVKSTP--FQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNA

Query:  ELDPEKRLYPGGKFFDPLGLAEDPEKKAV-LQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWA
        E +PEKR YPGG  FDPL LA + E++A  L+ AEIKHARLAMV+F G+ VQA  TG+G L + A
Subjt:  ELDPEKRLYPGGKFFDPLGLAEDPEKKAV-LQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWA

Q9S7W1 Chlorophyll a-b binding protein CP29.3, chloroplastic1.3e-11476.1Show/hide
Query:  TATAAATSSFIGTRLPDVRPSSGRVQAR--FSFGKKKTA-PKKSSKQI---SDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNL
        T TAAA S   G R+ D RP +GRVQAR  FSFGKKK A P K S+Q+    DR +WFPGA  PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNL
Subjt:  TATAAATSSFIGTRLPDVRPSSGRVQAR--FSFGKKKTA-PKKSSKQI---SDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNL

Query:  AKNVAGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGY
        AKNVAGDIIG   E+S++K TPFQPYTEVFG+QRFRECELIHGRWAML TLGA++VE LTG+ WQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLV+GY
Subjt:  AKNVAGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGY

Query:  IEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWAT
        IEFQRN+ELDPEKR+YPGG +FDPLGLA DPEK   L+LAEIKH+RLAMVAFL FA+QAA TGKGP++  AT
Subjt:  IEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWAT

Q9XF88 Chlorophyll a-b binding protein CP29.2, chloroplastic7.0e-13784.1Show/hide
Query:  TATAAATSSFIGTR-LPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA
        T+TAAA SS +GTR + D+  +S R  ARF FG KK +PKK+   ISDRPLWFPGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ 
Subjt:  TATAAATSSFIGTR-LPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA

Query:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR
        G++IGTR E  D KSTPFQPY+EVFGLQRFRECELIHGRWAMLATLGA++VEWLTGVTWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQR
Subjt:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR

Query:  NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
        NAELD EKRLYPGGKFFDPLGLA DP KKA LQLAEIKHARLAMV FLGFAVQAA TGKGPLNNWATHLSDPLHTTIID+FSS
Subjt:  NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS

Arabidopsis top hitse value%identityAlignment
AT2G40100.1 light harvesting complex photosystem II9.2e-11676.1Show/hide
Query:  TATAAATSSFIGTRLPDVRPSSGRVQAR--FSFGKKKTA-PKKSSKQI---SDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNL
        T TAAA S   G R+ D RP +GRVQAR  FSFGKKK A P K S+Q+    DR +WFPGA  PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNL
Subjt:  TATAAATSSFIGTRLPDVRPSSGRVQAR--FSFGKKKTA-PKKSSKQI---SDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNL

Query:  AKNVAGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGY
        AKNVAGDIIG   E+S++K TPFQPYTEVFG+QRFRECELIHGRWAML TLGA++VE LTG+ WQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLV+GY
Subjt:  AKNVAGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGY

Query:  IEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWAT
        IEFQRN+ELDPEKR+YPGG +FDPLGLA DPEK   L+LAEIKH+RLAMVAFL FA+QAA TGKGP++  AT
Subjt:  IEFQRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWAT

AT2G40100.2 light harvesting complex photosystem II2.1e-6773.1Show/hide
Query:  TATAAATSSFIGTRLPDVRPSSGRVQAR--FSFGKKKTA-PKKSSKQI---SDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNL
        T TAAA S   G R+ D RP +GRVQAR  FSFGKKK A P K S+Q+    DR +WFPGA  PEWLDGS++GD GFDPFGLGKPAEYLQYD D LDQNL
Subjt:  TATAAATSSFIGTRLPDVRPSSGRVQAR--FSFGKKKTA-PKKSSKQI---SDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNL

Query:  AKNVAGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVE
        AKNVAGDIIG   E+S++K TPFQPYTEVFG+QRFRECELIHGRWAML TLGA++VE LTG+ WQDAGKVE
Subjt:  AKNVAGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVE

AT3G08940.1 light harvesting complex photosystem II5.6e-7374.44Show/hide
Query:  TATAAATSSFIGTR-LPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA
        T+TAAA SS +GTR + D+  +S R  ARF FG KK +PKK+   ISDRPLWFPGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ 
Subjt:  TATAAATSSFIGTR-LPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA

Query:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF
        G++IGTR E  D KSTPFQPY+EVFGLQRFRECELIHGRWAMLATLGA++VEWLTGVTWQDAGKV  +  SS L   L F
Subjt:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPF

AT3G08940.2 light harvesting complex photosystem II5.0e-13884.1Show/hide
Query:  TATAAATSSFIGTR-LPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA
        T+TAAA SS +GTR + D+  +S R  ARF FG KK +PKK+   ISDRPLWFPGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+DLDSLDQNLAKN+ 
Subjt:  TATAAATSSFIGTR-LPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVA

Query:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR
        G++IGTR E  D KSTPFQPY+EVFGLQRFRECELIHGRWAMLATLGA++VEWLTGVTWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQR
Subjt:  GDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR

Query:  NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
        NAELD EKRLYPGGKFFDPLGLA DP KKA LQLAEIKHARLAMV FLGFAVQAA TGKGPLNNWATHLSDPLHTTIID+FSS
Subjt:  NAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS

AT5G01530.1 light harvesting complex photosystem II5.3e-14084.56Show/hide
Query:  TATAAATSSFIGTRL-PDVRPSSGRVQARFSFGKKKTAPKKSSKQ--ISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKN
        +A AAA SS +GTR+ P + P SGR  A F FGKKK APKKS+K+   +DRPLW+PGA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D+DSLDQNLAKN
Subjt:  TATAAATSSFIGTRL-PDVRPSSGRVQARFSFGKKKTAPKKSSKQ--ISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKN

Query:  VAGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEF
        +AGD+IGTR E +D KSTPFQPY+EVFG+QRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEF
Subjt:  VAGDIIGTRFENSDVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEF

Query:  QRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS
        QRNAELD EKRLYPGGKFFDPLGLA DPEK A LQLAEIKHARLAMVAFLGFAVQAA TGKGPLNNWATHLSDPLHTTIID+FSS
Subjt:  QRNAELDPEKRLYPGGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACCGCCACCGCCGCCGCAACCTCCTCCTTCATCGGAACGCGCCTCCCCGACGTGCGGCCGAGCTCCGGCCGAGTCCAAGCCCGATTCTCGTTCGGGAAAAAGAAAACCGC
GCCAAAGAAATCGTCGAAGCAGATTTCCGATCGGCCGCTGTGGTTCCCCGGCGCCAAGGCGCCGGAGTGGCTGGACGGAAGCTTAGTCGGCGACTACGGCTTCGATCCGT
TCGGATTGGGGAAACCGGCGGAGTATCTGCAGTACGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCCGGAGATATAATCGGAACGCGATTCGAGAACTCT
GATGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTTTTCGGATTGCAGAGGTTCCGTGAGTGCGAACTGATCCATGGAAGGTGGGCCATGCTGGCCACGCTCGGCGC
TCTCTCTGTTGAGTGGCTCACTGGCGTCACCTGGCAAGACGCCGGAAAGGTGGAATTGGTGGAAGGTTCGTCGTACTTGGGGCAGCCACTTCCATTCTCGATCACGACGC
TGATCTGGATCGAAGTTCTAGTGATCGGGTACATCGAGTTCCAGAGGAACGCGGAGCTTGACCCGGAGAAGAGGCTGTACCCGGGAGGCAAGTTTTTCGACCCGCTGGGG
CTGGCGGAGGACCCGGAGAAGAAGGCCGTCCTCCAACTGGCGGAGATCAAGCACGCCCGCCTCGCCATGGTCGCATTCCTCGGCTTCGCCGTCCAAGCCGCCGTTACCGG
CAAAGGCCCGCTCAACAACTGGGCGACCCATCTCAGCGACCCGCTCCACACCACCATTATCGATTCCTTTTCTTCT
mRNA sequenceShow/hide mRNA sequence
ACCGCCACCGCCGCCGCAACCTCCTCCTTCATCGGAACGCGCCTCCCCGACGTGCGGCCGAGCTCCGGCCGAGTCCAAGCCCGATTCTCGTTCGGGAAAAAGAAAACCGC
GCCAAAGAAATCGTCGAAGCAGATTTCCGATCGGCCGCTGTGGTTCCCCGGCGCCAAGGCGCCGGAGTGGCTGGACGGAAGCTTAGTCGGCGACTACGGCTTCGATCCGT
TCGGATTGGGGAAACCGGCGGAGTATCTGCAGTACGATTTGGACTCGTTGGACCAGAACTTGGCGAAGAATGTGGCCGGAGATATAATCGGAACGCGATTCGAGAACTCT
GATGTGAAATCGACGCCGTTTCAGCCGTACACGGAGGTTTTCGGATTGCAGAGGTTCCGTGAGTGCGAACTGATCCATGGAAGGTGGGCCATGCTGGCCACGCTCGGCGC
TCTCTCTGTTGAGTGGCTCACTGGCGTCACCTGGCAAGACGCCGGAAAGGTGGAATTGGTGGAAGGTTCGTCGTACTTGGGGCAGCCACTTCCATTCTCGATCACGACGC
TGATCTGGATCGAAGTTCTAGTGATCGGGTACATCGAGTTCCAGAGGAACGCGGAGCTTGACCCGGAGAAGAGGCTGTACCCGGGAGGCAAGTTTTTCGACCCGCTGGGG
CTGGCGGAGGACCCGGAGAAGAAGGCCGTCCTCCAACTGGCGGAGATCAAGCACGCCCGCCTCGCCATGGTCGCATTCCTCGGCTTCGCCGTCCAAGCCGCCGTTACCGG
CAAAGGCCCGCTCAACAACTGGGCGACCCATCTCAGCGACCCGCTCCACACCACCATTATCGATTCCTTTTCTTCT
Protein sequenceShow/hide protein sequence
TATAAATSSFIGTRLPDVRPSSGRVQARFSFGKKKTAPKKSSKQISDRPLWFPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFENS
DVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLG
LAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDSFSS