; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS013964 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013964
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-CH-type domain-containing protein
Genome locationscaffold607:1284243..1285586
RNA-Seq ExpressionMS013964
SyntenyMS013964
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR011016 - Zinc finger, RING-CH-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595366.1 hypothetical protein SDJN03_11919, partial [Cucurbita argyrosperma subsp. sororia]2.1e-5872.12Show/hide
Query:  IAAVDTPGSADLEQGRCSSGGERRREA------AERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAH
        +AA++T G  DLE+G     G RR EA      +ERDCRICHLGLES+S ECG  IELGCSCKNDL AAHKHCAEAWFKIRGNKTCEICHS+V NV G H
Subjt:  IAAVDTPGSADLEQGRCSSGGERRREA------AERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAH

Query:  EVEPVEQLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS
        E+E +EQL E NN T+STTTVA SV   P+GGR FWQVHRVLNFLLAC+VFAFVISWLFHFN+ S
Subjt:  EVEPVEQLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS

KAG7027374.1 hypothetical protein SDJN02_11386 [Cucurbita argyrosperma subsp. argyrosperma]1.3e-5771.52Show/hide
Query:  IAAVDTPGSADLEQGRCSSGGERRREA------AERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAH
        +AA++T G  DLE+G     G R  EA      +ERDCRICHLGLES+S ECG  IELGCSCKNDL AAHKHCAEAWFKIRGNKTCEICHS+V NV G H
Subjt:  IAAVDTPGSADLEQGRCSSGGERRREA------AERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAH

Query:  EVEPVEQLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS
        E+E +EQL E NN T+STTTVA SV   P+GGR FWQVHRVLNFLLAC+VFAFVISWLFHFN+ S
Subjt:  EVEPVEQLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS

XP_022151515.1 uncharacterized protein LOC111019441, partial [Momordica charantia]5.2e-86100Show/hide
Query:  IAAVDTPGSADLEQGRCSSGGERRREAAERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVE
        IAAVDTPGSADLEQGRCSSGGERRREAAERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVE
Subjt:  IAAVDTPGSADLEQGRCSSGGERRREAAERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVE

Query:  QLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS
        QLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS
Subjt:  QLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS

XP_023517920.1 uncharacterized protein LOC111781512 isoform X1 [Cucurbita pepo subsp. pepo]7.9e-5872.12Show/hide
Query:  IAAVDTPGSADLEQGRCSSGGERRREA------AERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAH
        +AA++T G  DLE+G     G RR EA      +ERDCRICHLGLES+S ECG  IELGCSCKNDL AAHKHCAEAWFKIRGNKTCEICHS+V NV G H
Subjt:  IAAVDTPGSADLEQGRCSSGGERRREA------AERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAH

Query:  EVEPVEQLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS
        E+E +EQL E NN T+STTTVA SV   P+GGR FWQVHRVLNFLLAC+VFAFVISWLFHFN+ S
Subjt:  EVEPVEQLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS

XP_038883458.1 uncharacterized protein LOC120074413 [Benincasa hispida]7.4e-5669.46Show/hide
Query:  IAAVDTPGSADLEQGRCSSGGER--------RREAAERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIG
        +AA++T G ADLE+G   +  ER        +    ERDCRICHLGL S+S+E G+GIELGC CKNDL  AHKHCAEAWFKIRGNKTCEICHS+V NV+ 
Subjt:  IAAVDTPGSADLEQGRCSSGGER--------RREAAERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIG

Query:  AHEVEPVEQLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS
          E E  EQL ESNN TVST TVA SV   P+GGRSFW VHRVLNFLLACMVFAFVISWLFHFNVPS
Subjt:  AHEVEPVEQLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS

TrEMBL top hitse value%identityAlignment
A0A0A0LAC9 RING-CH-type domain-containing protein1.8e-4774.05Show/hide
Query:  ERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTTVATSVTGGPNGGRS
        ERDCRICHLGLES+S E GI IELGCSCK+DL AAHKHCAE WFKI+GNKTCEICHS+  N++G +EVE  EQ +ESNNA+ STTTVA S+    +  +S
Subjt:  ERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTTVATSVTGGPNGGRS

Query:  FWQVHRVLNFLLACMVFAFVISWLFHFNVPS
        FW  HR LNFLLACMVFAFVISWLFHFNVPS
Subjt:  FWQVHRVLNFLLACMVFAFVISWLFHFNVPS

A0A1S3B5A7 uncharacterized protein LOC1034863398.0e-4874.05Show/hide
Query:  ERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTTVATSVTGGPNGGRS
        ERDCRICHLGLES+S E GI IELGCSCK+DL AAHKHCAE WFKI+GNKTCEICHS+  N++G +EVE  EQ +ESNNA+ STTTVA S+    +   S
Subjt:  ERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTTVATSVTGGPNGGRS

Query:  FWQVHRVLNFLLACMVFAFVISWLFHFNVPS
        FW+ HR LNFLLACMVFAFVISWLFHFNVPS
Subjt:  FWQVHRVLNFLLACMVFAFVISWLFHFNVPS

A0A6J1CWG7 uncharacterized protein LOC111015024 isoform X26.1e-4874.05Show/hide
Query:  ERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTTVATSVTGGPNGGRS
        ERDCRICHLGLES+S E GI IELGCSCK+DL AAHKHCAE WFKIRGNKTCEICHS+  N++G HEVE  EQ +ESNNA+ ST  VA S+    +  +S
Subjt:  ERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTTVATSVTGGPNGGRS

Query:  FWQVHRVLNFLLACMVFAFVISWLFHFNVPS
        FW+ HR LNFLLACMVFAFVISWLFHFNVPS
Subjt:  FWQVHRVLNFLLACMVFAFVISWLFHFNVPS

A0A6J1DBE4 uncharacterized protein LOC1110194412.5e-86100Show/hide
Query:  IAAVDTPGSADLEQGRCSSGGERRREAAERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVE
        IAAVDTPGSADLEQGRCSSGGERRREAAERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVE
Subjt:  IAAVDTPGSADLEQGRCSSGGERRREAAERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVE

Query:  QLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS
        QLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS
Subjt:  QLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS

A0A6J1I5G1 uncharacterized protein LOC1114700882.3e-4774.05Show/hide
Query:  ERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTTVATSVTGGPNGGRS
        ERDCRICHLGLES+S E GI IELGCSCK+DL AAHKHCAE WFKI+GNKTCEICHSV  N++G +EVE  EQ +ESNNA+ STT VA S+    +   S
Subjt:  ERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTTVATSVTGGPNGGRS

Query:  FWQVHRVLNFLLACMVFAFVISWLFHFNVPS
        FW+ HR LNFLLACMVFAFVISWLFHFNVPS
Subjt:  FWQVHRVLNFLLACMVFAFVISWLFHFNVPS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G37950.1 RING/FYVE/PHD zinc finger superfamily protein6.0e-3246.54Show/hide
Query:  IAAVDTPGSADLEQGRCSSGGERRREAAERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVE
        +++V +P S++++    ++         E+DCRICHLG+E+S    G  IELGCSCK+DL  AH+ CAE WFKI+G+KTCEIC SV  NV GA+E+  V 
Subjt:  IAAVDTPGSADLEQGRCSSGGERRREAAERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVE

Query:  QLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS
           E         T A    GG     + WQ  RV+N +LACMVF F ISW+FHF+V S
Subjt:  QLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS

AT5G01070.1 RING/FYVE/PHD zinc finger superfamily protein1.1e-1768.52Show/hide
Query:  REAAERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNK
        R + E+DCRICHLGLESS  ECG  + LGCSCK+DLG  HK CA+ WFKI+GNK
Subjt:  REAAERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNK

AT5G01070.2 RING/FYVE/PHD zinc finger superfamily protein4.9e-3453.33Show/hide
Query:  REAAERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTTVATSVTGGPN
        R + E+DCRICHLGLESS  ECG  + LGCSCK+DLG  HK CA+ WFKI+GNKTCEIC S+  N     + E  +   E+N   V      T V    +
Subjt:  REAAERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTTVATSVTGGPN

Query:  GGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS
          R   + +R LNFLL CMV AFVISW FHFN+PS
Subjt:  GGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS

AT5G05830.1 RING/FYVE/PHD zinc finger superfamily protein2.4e-4464.93Show/hide
Query:  AERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTTVATSVTGGPN--G
        +ERDCRICH+ L++++ E G+ IELGCSCK DL AAHKHCAE WFKI+GNK CE+C S+  NV+G+ EVE  E  +E+N   V   T+ TS   GP    
Subjt:  AERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTTVATSVTGGPN--G

Query:  GRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS
        GRSFWQ HR LNFLLACMVFAFVISWLFHFNVPS
Subjt:  GRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS

AT5G59000.1 RING/FYVE/PHD zinc finger superfamily protein6.5e-2638.92Show/hide
Query:  DTPGSADLEQG-------RCSSGGERRR------------EAAERDCRICHLGLE---------------SSSDE----------------CGIGIELGC
        D+    DLE G       +  SGG++RR            +   RDCRICHL LE               S  DE                 G+ ++LGC
Subjt:  DTPGSADLEQG-------RCSSGGERRR------------EAAERDCRICHLGLE---------------SSSDE----------------CGIGIELGC

Query:  SCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFH
        SCK DLG AH  CAE WFKI+GN TCEIC ++  NV G       +   ES  +T S      S+T      R  W    V+NFLLA MVFAFV+SWLFH
Subjt:  SCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATVSTTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFH

Query:  FNV
        F V
Subjt:  FNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATAGCGGCTGTGGACACTCCCGGATCAGCCGATTTGGAGCAGGGCCGCTGCTCCTCCGGCGGCGAGCGGCGGCGGGAGGCGGCGGAGAGAGACTGCAGGATTTGCCATTT
GGGTTTGGAGAGCAGTAGCGATGAGTGTGGAATTGGAATTGAATTGGGATGTTCTTGTAAGAACGATTTGGGTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAA
TCAGAGGAAACAAGACGTGTGAGATATGTCATTCAGTGGTAAGCAATGTCATCGGAGCACATGAAGTTGAACCAGTAGAGCAACTCAGTGAGTCGAACAACGCAACGGTA
TCGACAACCACCGTTGCGACGTCGGTGACCGGTGGTCCCAATGGTGGCCGGAGCTTTTGGCAAGTCCACCGTGTGCTGAATTTTCTTCTGGCTTGTATGGTATTTGCTTT
TGTCATATCTTGGCTCTTCCATTTCAATGTGCCATCA
mRNA sequenceShow/hide mRNA sequence
ATAGCGGCTGTGGACACTCCCGGATCAGCCGATTTGGAGCAGGGCCGCTGCTCCTCCGGCGGCGAGCGGCGGCGGGAGGCGGCGGAGAGAGACTGCAGGATTTGCCATTT
GGGTTTGGAGAGCAGTAGCGATGAGTGTGGAATTGGAATTGAATTGGGATGTTCTTGTAAGAACGATTTGGGTGCTGCCCACAAGCATTGTGCTGAGGCTTGGTTCAAAA
TCAGAGGAAACAAGACGTGTGAGATATGTCATTCAGTGGTAAGCAATGTCATCGGAGCACATGAAGTTGAACCAGTAGAGCAACTCAGTGAGTCGAACAACGCAACGGTA
TCGACAACCACCGTTGCGACGTCGGTGACCGGTGGTCCCAATGGTGGCCGGAGCTTTTGGCAAGTCCACCGTGTGCTGAATTTTCTTCTGGCTTGTATGGTATTTGCTTT
TGTCATATCTTGGCTCTTCCATTTCAATGTGCCATCA
Protein sequenceShow/hide protein sequence
IAAVDTPGSADLEQGRCSSGGERRREAAERDCRICHLGLESSSDECGIGIELGCSCKNDLGAAHKHCAEAWFKIRGNKTCEICHSVVSNVIGAHEVEPVEQLSESNNATV
STTTVATSVTGGPNGGRSFWQVHRVLNFLLACMVFAFVISWLFHFNVPS