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MS013977 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS013977
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein FAR1-RELATED SEQUENCE 4-like
Genome locationscaffold607:1381460..1381809
RNA-Seq ExpressionMS013977
SyntenyMS013977
Gene Ontology termsGO:0006313 - transposition, DNA-mediated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0004803 - transposase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022131652.1 protein FAR1-RELATED SEQUENCE 4-like [Momordica charantia]4.6e-3968.7Show/hide
Query:  SSFHCFCTHHINMNLMTKFKNEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTA
        ++FHCFC HH+ MNL+ KFK  A+E LF+KA KA  ESYFN  W +L A+ GVREYL+ IGKE WARCFQ  LRY+QMTTNIA+S++ LF+HARKLS+TA
Subjt:  SSFHCFCTHHINMNLMTKFKNEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTA

Query:  LLDHIRGVLQERFYE
        LLDHIRGVLQ  FYE
Subjt:  LLDHIRGVLQERFYE

XP_022151004.1 uncharacterized protein LOC111019024 [Momordica charantia]7.0e-4070.34Show/hide
Query:  SSFHCFCTHHINMNLMTKFKNE--AIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSM
        ++FHCFC  HI +NL+ KFKN+  A+E LF KA KA  ESYFN IWA+L AY GVREYLDDIGKE WARCFQ  LRYTQMTTNIA+S++ LF+HARKL +
Subjt:  SSFHCFCTHHINMNLMTKFKNE--AIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSM

Query:  TALLDHIRGVLQERFYER
        TALLDHIRG LQ  FY+R
Subjt:  TALLDHIRGVLQERFYER

XP_022153146.1 uncharacterized protein LOC111020715 [Momordica charantia]2.1e-3969.49Show/hide
Query:  SSFHCFCTHHINMNLMTKFK--NEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSM
        ++FHCFC  HI MNL+ KFK   +A+E LF KA KA  ESYFN IWA+LGAY GVREYLDDIGKE WARCFQ +LRYTQMT+N A+S++ LF+HARKL +
Subjt:  SSFHCFCTHHINMNLMTKFK--NEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSM

Query:  TALLDHIRGVLQERFYER
        TALLDHIRG+LQ  FY+R
Subjt:  TALLDHIRGVLQERFYER

XP_022154610.1 uncharacterized protein LOC111021833 [Momordica charantia]2.1e-3969.49Show/hide
Query:  SSFHCFCTHHINMNLMTKFKNE--AIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSM
        ++FHCFC  HI +NL+ KFKN+  A+E LF KATKA  ESYFN IWA+L AY GVREYLDDIGKE WARCFQ  LRYTQMTTNIA+S++  F+HARKL +
Subjt:  SSFHCFCTHHINMNLMTKFKNE--AIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSM

Query:  TALLDHIRGVLQERFYER
        TALLDHIRG L   FY+R
Subjt:  TALLDHIRGVLQERFYER

XP_022154964.1 protein FAR1-RELATED SEQUENCE 4-like [Momordica charantia]2.7e-3967.24Show/hide
Query:  SSFHCFCTHHINMNLMTKFKNEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTA
        ++FHCFC HH+ MNL+ KFK   +E LF+KA KAC ESYFN  W +L A+ GVREY++ IGKE WARCFQ  LRY QMTTNIA+S++ LF+HARKL +TA
Subjt:  SSFHCFCTHHINMNLMTKFKNEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTA

Query:  LLDHIRGVLQERFYER
        LLDHIRGVLQ  FYER
Subjt:  LLDHIRGVLQERFYER

TrEMBL top hitse value%identityAlignment
A0A6J1BRM2 protein FAR1-RELATED SEQUENCE 4-like2.2e-3968.7Show/hide
Query:  SSFHCFCTHHINMNLMTKFKNEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTA
        ++FHCFC HH+ MNL+ KFK  A+E LF+KA KA  ESYFN  W +L A+ GVREYL+ IGKE WARCFQ  LRY+QMTTNIA+S++ LF+HARKLS+TA
Subjt:  SSFHCFCTHHINMNLMTKFKNEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTA

Query:  LLDHIRGVLQERFYE
        LLDHIRGVLQ  FYE
Subjt:  LLDHIRGVLQERFYE

A0A6J1DBQ5 uncharacterized protein LOC1110190243.4e-4070.34Show/hide
Query:  SSFHCFCTHHINMNLMTKFKNE--AIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSM
        ++FHCFC  HI +NL+ KFKN+  A+E LF KA KA  ESYFN IWA+L AY GVREYLDDIGKE WARCFQ  LRYTQMTTNIA+S++ LF+HARKL +
Subjt:  SSFHCFCTHHINMNLMTKFKNE--AIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSM

Query:  TALLDHIRGVLQERFYER
        TALLDHIRG LQ  FY+R
Subjt:  TALLDHIRGVLQERFYER

A0A6J1DJT1 uncharacterized protein LOC1110207159.9e-4069.49Show/hide
Query:  SSFHCFCTHHINMNLMTKFK--NEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSM
        ++FHCFC  HI MNL+ KFK   +A+E LF KA KA  ESYFN IWA+LGAY GVREYLDDIGKE WARCFQ +LRYTQMT+N A+S++ LF+HARKL +
Subjt:  SSFHCFCTHHINMNLMTKFK--NEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSM

Query:  TALLDHIRGVLQERFYER
        TALLDHIRG+LQ  FY+R
Subjt:  TALLDHIRGVLQERFYER

A0A6J1DK35 uncharacterized protein LOC1110218339.9e-4069.49Show/hide
Query:  SSFHCFCTHHINMNLMTKFKNE--AIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSM
        ++FHCFC  HI +NL+ KFKN+  A+E LF KATKA  ESYFN IWA+L AY GVREYLDDIGKE WARCFQ  LRYTQMTTNIA+S++  F+HARKL +
Subjt:  SSFHCFCTHHINMNLMTKFKNE--AIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSM

Query:  TALLDHIRGVLQERFYER
        TALLDHIRG L   FY+R
Subjt:  TALLDHIRGVLQERFYER

A0A6J1DNT3 protein FAR1-RELATED SEQUENCE 4-like1.3e-3967.24Show/hide
Query:  SSFHCFCTHHINMNLMTKFKNEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTA
        ++FHCFC HH+ MNL+ KFK   +E LF+KA KAC ESYFN  W +L A+ GVREY++ IGKE WARCFQ  LRY QMTTNIA+S++ LF+HARKL +TA
Subjt:  SSFHCFCTHHINMNLMTKFKNEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTA

Query:  LLDHIRGVLQERFYER
        LLDHIRGVLQ  FYER
Subjt:  LLDHIRGVLQERFYER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCTCTTTTCATTGCTTCTGTACACATCATATTAATATGAACTTGATGACAAAATTTAAAAACGAAGCGATTGAGCCACTATTTTATAAGGCCACGAAGGCATGTGGGGA
GTCTTATTTCAACATCATATGGGCCGAACTTGGTGCATATACCGGTGTGAGGGAATATCTGGACGACATTGGCAAGGAACATTGGGCTCGTTGTTTCCAAATTGACTTGA
GATACACACAGATGACCACTAATATCGCTAAGTCCATGAGTGTCCTATTCAAGCACGCGCGTAAGTTGTCAATGACTGCTTTACTTGACCATATCAGAGGTGTGTTACAG
GAACGGTTCTACGAACGG
mRNA sequenceShow/hide mRNA sequence
TCCTCTTTTCATTGCTTCTGTACACATCATATTAATATGAACTTGATGACAAAATTTAAAAACGAAGCGATTGAGCCACTATTTTATAAGGCCACGAAGGCATGTGGGGA
GTCTTATTTCAACATCATATGGGCCGAACTTGGTGCATATACCGGTGTGAGGGAATATCTGGACGACATTGGCAAGGAACATTGGGCTCGTTGTTTCCAAATTGACTTGA
GATACACACAGATGACCACTAATATCGCTAAGTCCATGAGTGTCCTATTCAAGCACGCGCGTAAGTTGTCAATGACTGCTTTACTTGACCATATCAGAGGTGTGTTACAG
GAACGGTTCTACGAACGG
Protein sequenceShow/hide protein sequence
SSFHCFCTHHINMNLMTKFKNEAIEPLFYKATKACGESYFNIIWAELGAYTGVREYLDDIGKEHWARCFQIDLRYTQMTTNIAKSMSVLFKHARKLSMTALLDHIRGVLQ
ERFYER