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MS014005 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014005
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description30S ribosomal protein S12, chloroplastic
Genome locationscaffold607:1562774..1562902
RNA-Seq ExpressionMS014005
SyntenyMS014005
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AKJ77720.1 ribosomal protein S12 [Perilla frutescens]7.9e-1393.02Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
EYU43439.1 hypothetical protein MIMGU_mgv11b016653mg, partial [Erythranthe guttata]7.9e-1393.02Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
QDB64107.1 ribosomal protein S12 [Elsholtzia splendens]7.9e-1393.02Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
YP_007379186.1 ribosomal protein S12 [Tectona grandis]7.9e-1393.02Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
YP_010027249.1 ribosomal protein S12 [Oreocharis cotinifolia]7.9e-1393.02Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
TrEMBL top hitse value%identityAlignment
A0A2H4NSD4 30S ribosomal protein S12, chloroplastic3.8e-1393.02Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
A0A6M5U745 30S ribosomal protein S12, chloroplastic3.8e-1393.02Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
A0A6M8PPW2 30S ribosomal protein S12, chloroplastic3.8e-1393.02Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
A0A7L7TCK2 Ribosomal protein S123.8e-1393.02Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
A0A7S6U9G2 Ribosomal protein S123.8e-1393.02Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
SwissProt top hitse value%identityAlignment
A4QJV5 30S ribosomal protein S12-A, chloroplastic4.4e-1492.5Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
P30060 Plastid 30S ribosomal protein S123.3e-1490Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        ++S VLVRGGRVKDLPGVRYHI+RGTLDAVGVKDRQQGRS
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Q0G9J5 30S ribosomal protein S12, chloroplastic1.8e-1593.02Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Q1KXY0 30S ribosomal protein S12, chloroplastic1.8e-1593.02Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Q332V3 30S ribosomal protein S12, chloroplastic1.8e-1593.02Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
        ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Arabidopsis top hitse value%identityAlignment
AT2G07675.1 Ribosomal protein S12/S23 family protein1.1e-0755Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        ++S VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
ATCG00065.1 ribosomal protein S12A3.1e-1592.5Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
ATCG00905.1 ribosomal protein S12C3.1e-1592.5Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
ATCG01230.1 ribosomal protein S12B3.1e-1592.5Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        ++S VLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
ATMG00980.1 Ribosomal protein S12/S23 family protein1.1e-0755Show/hide
Query:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
        ++S VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Subjt:  KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGAACTCCAAAGTTTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACA
AGGGCGTTCTAGTGCGTTG
mRNA sequenceShow/hide mRNA sequence
AAGAACTCCAAAGTTTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACA
AGGGCGTTCTAGTGCGTTG
Protein sequenceShow/hide protein sequence
KNSKVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL