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MS014024 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014024
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationscaffold5:68443..68784
RNA-Seq ExpressionMS014024
SyntenyMS014024
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_010098649.1 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Morus notabilis]5.3e-2458.62Show/hide
Query:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMK-ECLWPEKSAGYMFLEEC-KKLYPPDIVA
        R GM+ E A +LF  +R  GST S P+AKTY  MIVALV+NGR EECFKFLE + SSGC+PDVS YKEL++  CL  +    Y FL+E   K +PPDIV 
Subjt:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMK-ECLWPEKSAGYMFLEEC-KKLYPPDIVA

Query:  YKCFLKVLSGNKRKIE
        Y CFLKVL  NK++ E
Subjt:  YKCFLKVLSGNKRKIE

XP_011649074.1 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X2 [Cucumis sativus]6.9e-2460.71Show/hide
Query:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKE-CLWPEKSAGYMFLEEC-KKLYPPDIVA
        + GML+E A +LF  +R  GS  S P+AKTY  MIVALV NGR EECFKFLE +  SGCLPDVS YKE+++  C+  +    YMFLEE  KK YPPDIV 
Subjt:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKE-CLWPEKSAGYMFLEEC-KKLYPPDIVA

Query:  YKCFLKVLSGNK
        Y CFLKVL  NK
Subjt:  YKCFLKVLSGNK

XP_022138561.1 pentatricopeptide repeat-containing protein At1g73400, mitochondrial [Momordica charantia]1.1e-2665.18Show/hide
Query:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMK-ECLWPEKSAGYMFLEEC-KKLYPPDIVA
        + GML E AGKLF  +R  GST S P+AKTY  MIVALVKNGR EECFKFLE + +SGCLPDVS YKEL++  CL  +    Y+FLEE  KK YPPDIV 
Subjt:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMK-ECLWPEKSAGYMFLEEC-KKLYPPDIVA

Query:  YKCFLKVLSGNK
        Y CFLKVL  NK
Subjt:  YKCFLKVLSGNK

XP_024022899.1 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X2 [Morus notabilis]5.3e-2458.62Show/hide
Query:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMK-ECLWPEKSAGYMFLEEC-KKLYPPDIVA
        R GM+ E A +LF  +R  GST S P+AKTY  MIVALV+NGR EECFKFLE + SSGC+PDVS YKEL++  CL  +    Y FL+E   K +PPDIV 
Subjt:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMK-ECLWPEKSAGYMFLEEC-KKLYPPDIVA

Query:  YKCFLKVLSGNKRKIE
        Y CFLKVL  NK++ E
Subjt:  YKCFLKVLSGNKRKIE

XP_031737290.1 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X1 [Cucumis sativus]6.9e-2460.71Show/hide
Query:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKE-CLWPEKSAGYMFLEEC-KKLYPPDIVA
        + GML+E A +LF  +R  GS  S P+AKTY  MIVALV NGR EECFKFLE +  SGCLPDVS YKE+++  C+  +    YMFLEE  KK YPPDIV 
Subjt:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKE-CLWPEKSAGYMFLEEC-KKLYPPDIVA

Query:  YKCFLKVLSGNK
        Y CFLKVL  NK
Subjt:  YKCFLKVLSGNK

TrEMBL top hitse value%identityAlignment
A0A0A0LI23 Uncharacterized protein3.3e-2460.71Show/hide
Query:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKE-CLWPEKSAGYMFLEEC-KKLYPPDIVA
        + GML+E A +LF  +R  GS  S P+AKTY  MIVALV NGR EECFKFLE +  SGCLPDVS YKE+++  C+  +    YMFLEE  KK YPPDIV 
Subjt:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKE-CLWPEKSAGYMFLEEC-KKLYPPDIVA

Query:  YKCFLKVLSGNK
        Y CFLKVL  NK
Subjt:  YKCFLKVLSGNK

A0A1S3C5I6 pentatricopeptide repeat-containing protein At1g73400, mitochondrial isoform X15.7e-2459.82Show/hide
Query:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKE-CLWPEKSAGYMFLEEC-KKLYPPDIVA
        + GML+E A + F  +R  GST S P+AKTY  MIVALV NGR EECFK+L+ +  SGCLPDVS YKEL++  C+  +    YMFLEE  KK YPPDIV 
Subjt:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKE-CLWPEKSAGYMFLEEC-KKLYPPDIVA

Query:  YKCFLKVLSGNK
        Y CFLKVL  NK
Subjt:  YKCFLKVLSGNK

A0A5D3BPV0 Pentatricopeptide repeat-containing protein5.7e-2459.82Show/hide
Query:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKE-CLWPEKSAGYMFLEEC-KKLYPPDIVA
        + GML+E A + F  +R  GST S P+AKTY  MIVALV NGR EECFK+L+ +  SGCLPDVS YKEL++  C+  +    YMFLEE  KK YPPDIV 
Subjt:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKE-CLWPEKSAGYMFLEEC-KKLYPPDIVA

Query:  YKCFLKVLSGNK
        Y CFLKVL  NK
Subjt:  YKCFLKVLSGNK

A0A6J1CA28 pentatricopeptide repeat-containing protein At1g73400, mitochondrial5.5e-2765.18Show/hide
Query:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMK-ECLWPEKSAGYMFLEEC-KKLYPPDIVA
        + GML E AGKLF  +R  GST S P+AKTY  MIVALVKNGR EECFKFLE + +SGCLPDVS YKEL++  CL  +    Y+FLEE  KK YPPDIV 
Subjt:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMK-ECLWPEKSAGYMFLEEC-KKLYPPDIVA

Query:  YKCFLKVLSGNK
        Y CFLKVL  NK
Subjt:  YKCFLKVLSGNK

W9R7Y9 Uncharacterized protein2.6e-2458.62Show/hide
Query:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMK-ECLWPEKSAGYMFLEEC-KKLYPPDIVA
        R GM+ E A +LF  +R  GST S P+AKTY  MIVALV+NGR EECFKFLE + SSGC+PDVS YKEL++  CL  +    Y FL+E   K +PPDIV 
Subjt:  RTGMLREDAGKLFSCIRI-GSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMK-ECLWPEKSAGYMFLEEC-KKLYPPDIVA

Query:  YKCFLKVLSGNKRKIE
        Y CFLKVL  NK++ E
Subjt:  YKCFLKVLSGNKRKIE

SwissProt top hitse value%identityAlignment
Q3EDF8 Pentatricopeptide repeat-containing protein At1g099002.8e-0426.51Show/hide
Query:  PSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKECLWPEK--SAGYMFLEECKKLYPPDIVAYKCFLKVL
        P   TY  ++  + K GR +E  KFL D+ SSGC P+V  +  +++      +   A  +  +  +K + P +V +   +  L
Subjt:  PSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKECLWPEK--SAGYMFLEECKKLYPPDIVAYKCFLKVL

Q9FX35 Pentatricopeptide repeat-containing protein At1g73400, mitochondrial1.3e-2046.09Show/hide
Query:  RTGMLREDAGKLFSCIRIGSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMK-ECLWPEKSAGYMFLEE-CKKLYPPDIVAY
        + GM+ E A      I  GS  S P+AKT+  MIVAL KN + EECF+ +  + S+GCLPDVS YK++++  C+  +    Y FL+E   K YPPDIV Y
Subjt:  RTGMLREDAGKLFSCIRIGSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMK-ECLWPEKSAGYMFLEE-CKKLYPPDIVAY

Query:  KCFLKVLSGNKRKIE
         CFL+VL  N++  E
Subjt:  KCFLKVLSGNKRKIE

Q9MAG8 Putative pentatricopeptide repeat-containing protein At1g533309.7e-0532.5Show/hide
Query:  AKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKE-CLWPEKSAGYMFLEE-CKKLYPPDIVAYKCFLKV
        A  Y+T+I +L+K GR+ E    LE+++  GC PD   Y  L+   C+  +  +    L+E  +K   PD+++Y   L V
Subjt:  AKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKE-CLWPEKSAGYMFLEE-CKKLYPPDIVAYKCFLKV

Q9SR00 Pentatricopeptide repeat-containing protein At3g04760, chloroplastic6.3e-0431.03Show/hide
Query:  PSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKECL----WP--EKSAGYMFLEECKKLYPPDIVAYKCFLKVL
        P   TY T+I  + K G  +  F+ + ++   GC PDV  Y  L++  L    W   EK    MF E+C     P++V Y   +  L
Subjt:  PSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKECL----WP--EKSAGYMFLEECKKLYPPDIVAYKCFLKVL

Arabidopsis top hitse value%identityAlignment
AT1G09900.1 Pentatricopeptide repeat (PPR-like) superfamily protein2.0e-0526.51Show/hide
Query:  PSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKECLWPEK--SAGYMFLEECKKLYPPDIVAYKCFLKVL
        P   TY  ++  + K GR +E  KFL D+ SSGC P+V  +  +++      +   A  +  +  +K + P +V +   +  L
Subjt:  PSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKECLWPEK--SAGYMFLEECKKLYPPDIVAYKCFLKVL

AT1G53330.1 Pentatricopeptide repeat (PPR) superfamily protein6.9e-0632.5Show/hide
Query:  AKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKE-CLWPEKSAGYMFLEE-CKKLYPPDIVAYKCFLKV
        A  Y+T+I +L+K GR+ E    LE+++  GC PD   Y  L+   C+  +  +    L+E  +K   PD+++Y   L V
Subjt:  AKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKE-CLWPEKSAGYMFLEE-CKKLYPPDIVAYKCFLKV

AT1G73400.1 Pentatricopeptide repeat (PPR) superfamily protein9.0e-2246.09Show/hide
Query:  RTGMLREDAGKLFSCIRIGSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMK-ECLWPEKSAGYMFLEE-CKKLYPPDIVAY
        + GM+ E A      I  GS  S P+AKT+  MIVAL KN + EECF+ +  + S+GCLPDVS YK++++  C+  +    Y FL+E   K YPPDIV Y
Subjt:  RTGMLREDAGKLFSCIRIGSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMK-ECLWPEKSAGYMFLEE-CKKLYPPDIVAY

Query:  KCFLKVLSGNKRKIE
         CFL+VL  N++  E
Subjt:  KCFLKVLSGNKRKIE

AT2G17525.1 Pentatricopeptide repeat (PPR) superfamily protein2.9e-0427.38Show/hide
Query:  PSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKE-CLWPE-KSAGYMFLEECKKLYPPDIVAYKCFLKVLS
        P + T+  +I+   K  +     KF+ED+   GC+PD   Y  L++E C+  + + A  +F    +K   PD   +   +  LS
Subjt:  PSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKE-CLWPE-KSAGYMFLEECKKLYPPDIVAYKCFLKVLS

AT3G04760.1 Pentatricopeptide repeat (PPR-like) superfamily protein4.5e-0531.03Show/hide
Query:  PSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKECL----WP--EKSAGYMFLEECKKLYPPDIVAYKCFLKVL
        P   TY T+I  + K G  +  F+ + ++   GC PDV  Y  L++  L    W   EK    MF E+C     P++V Y   +  L
Subjt:  PSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKECL----WP--EKSAGYMFLEECKKLYPPDIVAYKCFLKVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGAACAGGAATGCTGAGAGAAGACGCAGGAAAACTCTTCAGCTGCATAAGAATTGGTTCTACTCCGTCTTTTCCCTCTGCAAAGACTTACACAACCATGATTGTGGCTCT
TGTTAAGAATGGTAGAACAGAAGAATGCTTCAAGTTTCTGGAAGACATCACAAGCAGTGGTTGCCTTCCTGATGTTTCTATGTACAAGGAACTAATGAAGGAATGTCTGT
GGCCGGAAAAGTCTGCTGGTTACATGTTTCTGGAAGAATGTAAGAAACTTTATCCTCCTGATATAGTTGCTTATAAATGTTTCCTCAAGGTTCTCAGTGGTAATAAAAGA
AAGATTGAA
mRNA sequenceShow/hide mRNA sequence
CGAACAGGAATGCTGAGAGAAGACGCAGGAAAACTCTTCAGCTGCATAAGAATTGGTTCTACTCCGTCTTTTCCCTCTGCAAAGACTTACACAACCATGATTGTGGCTCT
TGTTAAGAATGGTAGAACAGAAGAATGCTTCAAGTTTCTGGAAGACATCACAAGCAGTGGTTGCCTTCCTGATGTTTCTATGTACAAGGAACTAATGAAGGAATGTCTGT
GGCCGGAAAAGTCTGCTGGTTACATGTTTCTGGAAGAATGTAAGAAACTTTATCCTCCTGATATAGTTGCTTATAAATGTTTCCTCAAGGTTCTCAGTGGTAATAAAAGA
AAGATTGAA
Protein sequenceShow/hide protein sequence
RTGMLREDAGKLFSCIRIGSTPSFPSAKTYTTMIVALVKNGRTEECFKFLEDITSSGCLPDVSMYKELMKECLWPEKSAGYMFLEECKKLYPPDIVAYKCFLKVLSGNKR
KIE