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MS014077 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014077
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionF-box/FBD/LRR-repeat protein
Genome locationscaffold5:420393..420640
RNA-Seq ExpressionMS014077
SyntenyMS014077
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054510.1 F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa]1.0e-0542.86Show/hide
Query:  IELSDNIMS--VKRCPLLEEVSFLSCYNVCKLRLNRSIKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV
        I LSD IM   +  CP+LEE+S   C  + KL+L  +IKRL I +GW+ +++   +LEI C  + SLE +G+I LV L  S+ +
Subjt:  IELSDNIMS--VKRCPLLEEVSFLSCYNVCKLRLNRSIKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV

KAA8524482.1 hypothetical protein F0562_010905 [Nyssa sinensis]4.4e-0442.17Show/hide
Query:  LSDNIMS--VKRCPLLEEVSFLSCYNVCKLRL-NRSIKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV
        L+D IM   +  CPLLEE+S   CY + KL + N + K LI+  G+++       LEI CP++ SL+I+GSI  V L ++S V
Subjt:  LSDNIMS--VKRCPLLEEVSFLSCYNVCKLRL-NRSIKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV

XP_004143230.1 putative F-box/LRR-repeat protein At3g18150 [Cucumis sativus]3.6e-0644.71Show/hide
Query:  IELSDNIMS--VKRCPLLEEVSFLSCYNVCKLRLNRS-IKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV
        I LSD IM   +  CP+LEE+S   C  + KL+L  S IKRL I +GW+++ +   +LEI CP + SLE++G+I LV L  S+ +
Subjt:  IELSDNIMS--VKRCPLLEEVSFLSCYNVCKLRLNRS-IKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV

XP_008465581.2 PREDICTED: F-box/FBD/LRR-repeat protein At1g78750-like [Cucumis melo]1.0e-0542.86Show/hide
Query:  IELSDNIMS--VKRCPLLEEVSFLSCYNVCKLRLNRSIKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV
        I LSD IM   +  CP+LEE+S   C  + KL+L  +IKRL I +GW+ +++   +LEI C  + SLE +G+I LV L  S+ +
Subjt:  IELSDNIMS--VKRCPLLEEVSFLSCYNVCKLRLNRSIKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV

XP_022149727.1 LOW QUALITY PROTEIN: putative F-box/LRR-repeat protein At3g18150 [Momordica charantia]8.8e-2171.76Show/hide
Query:  IELSDNIMS--VKRCPLLEEVSFLSCYNVCKLRL-NRSIKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV
        IELSDNIM+  V+ C +LEE+SFLSC  V  LRL N  +KRLIISIGW ++KL+KKKLEIICPHVTSLEISG+IPLVDL +SS V
Subjt:  IELSDNIMS--VKRCPLLEEVSFLSCYNVCKLRL-NRSIKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV

TrEMBL top hitse value%identityAlignment
A0A0A0KDY5 F-box domain-containing protein1.7e-0644.71Show/hide
Query:  IELSDNIMS--VKRCPLLEEVSFLSCYNVCKLRLNRS-IKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV
        I LSD IM   +  CP+LEE+S   C  + KL+L  S IKRL I +GW+++ +   +LEI CP + SLE++G+I LV L  S+ +
Subjt:  IELSDNIMS--VKRCPLLEEVSFLSCYNVCKLRLNRS-IKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV

A0A1S3CPK7 F-box/FBD/LRR-repeat protein At1g78750-like5.1e-0642.86Show/hide
Query:  IELSDNIMS--VKRCPLLEEVSFLSCYNVCKLRLNRSIKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV
        I LSD IM   +  CP+LEE+S   C  + KL+L  +IKRL I +GW+ +++   +LEI C  + SLE +G+I LV L  S+ +
Subjt:  IELSDNIMS--VKRCPLLEEVSFLSCYNVCKLRLNRSIKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV

A0A5A7UGX2 F-box/FBD/LRR-repeat protein5.1e-0642.86Show/hide
Query:  IELSDNIMS--VKRCPLLEEVSFLSCYNVCKLRLNRSIKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV
        I LSD IM   +  CP+LEE+S   C  + KL+L  +IKRL I +GW+ +++   +LEI C  + SLE +G+I LV L  S+ +
Subjt:  IELSDNIMS--VKRCPLLEEVSFLSCYNVCKLRLNRSIKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV

A0A5J5A3U5 FBD domain-containing protein2.1e-0442.17Show/hide
Query:  LSDNIMS--VKRCPLLEEVSFLSCYNVCKLRL-NRSIKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV
        L+D IM   +  CPLLEE+S   CY + KL + N + K LI+  G+++       LEI CP++ SL+I+GSI  V L ++S V
Subjt:  LSDNIMS--VKRCPLLEEVSFLSCYNVCKLRL-NRSIKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV

A0A6J1D8S4 LOW QUALITY PROTEIN: putative F-box/LRR-repeat protein At3g181504.3e-2171.76Show/hide
Query:  IELSDNIMS--VKRCPLLEEVSFLSCYNVCKLRL-NRSIKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV
        IELSDNIM+  V+ C +LEE+SFLSC  V  LRL N  +KRLIISIGW ++KL+KKKLEIICPHVTSLEISG+IPLVDL +SS V
Subjt:  IELSDNIMS--VKRCPLLEEVSFLSCYNVCKLRL-NRSIKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATAGAGTTGAGTGACAATATTATGAGCGTGAAAAGGTGTCCGTTGCTCGAAGAAGTTTCTTTCCTTAGTTGTTATAATGTTTGTAAGCTGAGGTTGAATCGTAGTATTAA
AAGACTGATTATTTCCATTGGATGGAAAGATGACAAGTTGATGAAGAAGAAGTTGGAGATTATCTGTCCTCATGTCACATCATTGGAAATTTCAGGATCGATACCGCTTG
TGGATTTAAATGATTCATCTTTTGTC
mRNA sequenceShow/hide mRNA sequence
ATAGAGTTGAGTGACAATATTATGAGCGTGAAAAGGTGTCCGTTGCTCGAAGAAGTTTCTTTCCTTAGTTGTTATAATGTTTGTAAGCTGAGGTTGAATCGTAGTATTAA
AAGACTGATTATTTCCATTGGATGGAAAGATGACAAGTTGATGAAGAAGAAGTTGGAGATTATCTGTCCTCATGTCACATCATTGGAAATTTCAGGATCGATACCGCTTG
TGGATTTAAATGATTCATCTTTTGTC
Protein sequenceShow/hide protein sequence
IELSDNIMSVKRCPLLEEVSFLSCYNVCKLRLNRSIKRLIISIGWKDDKLMKKKLEIICPHVTSLEISGSIPLVDLNDSSFV