; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS014085 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014085
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNA-directed RNA polymerase III subunit rpc6
Genome locationscaffold5:476719..477432
RNA-Seq ExpressionMS014085
SyntenyMS014085
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR007832 - RNA polymerase Rpc34
IPR016049 - RNA polymerase Rpc34-like
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604735.1 DNA-directed RNA polymerase III subunit rpc6, partial [Cucurbita argyrosperma subsp. sororia]5.7e-12190Show/hide
Query:  MSRSQGPSSLKRKRPDSS--SGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MSRSQGPSSLKRKRP+ +   GGALIEHEKVLYDLICSKQSMGIWIGD+KRETKY D++VTKSLKALQ +G+IKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSRSQGPSSLKRKRPDSS--SGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGE
        GNWYS+GKLDREYI+TLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQI+EIVNALVLDNEVMEVKSTG+GEFDFIP+GKICYK YAK GVKGE
Subjt:  GNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGE

Query:  PKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        PKTGAMAS PCGVCPRI+HCTPNG+ISPRTCVYYTKWL+F
Subjt:  PKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

XP_022149571.1 DNA-directed RNA polymerase III subunit rpc6 isoform X1 [Momordica charantia]6.5e-13399.58Show/hide
Query:  MSRSQGPSSLKRKRPDSSSGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGN
        MSRSQGPSSLKRKRPDSSSGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGN
Subjt:  MSRSQGPSSLKRKRPDSSSGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGN

Query:  WYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGEPK
        WYSEGKLDREYINTLKGFC RMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGEPK
Subjt:  WYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGEPK

Query:  TGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        TGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
Subjt:  TGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

XP_022149573.1 DNA-directed RNA polymerase III subunit rpc6 isoform X2 [Momordica charantia]2.0e-11099.5Show/hide
Query:  MGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFK
        MGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLDREYINTLKGFC RMIQKMKVATIEGIVDSFK
Subjt:  MGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFK

Query:  KSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        KSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
Subjt:  KSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

XP_022946967.1 DNA-directed RNA polymerase III subunit rpc6 [Cucurbita moschata]5.7e-12190Show/hide
Query:  MSRSQGPSSLKRKRPDSS--SGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MSRSQGPSSLKRKRP+ +   GGALIEHEKVLYDLICSKQSMGIWIGD+KRETKY D++VTKSLKALQ +G+IKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSRSQGPSSLKRKRPDSS--SGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGE
        GNWYS+GKLDREYI+TLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQI+EIVNALVLDNEVMEVKSTG+GEFDFIP+GKICYK YAK GVKGE
Subjt:  GNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGE

Query:  PKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        PKTGAMAS PCGVCPRI+HCTPNG+ISPRTCVYYTKWL+F
Subjt:  PKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

XP_022970903.1 DNA-directed RNA polymerase III subunit rpc6 [Cucurbita maxima]4.4e-12190Show/hide
Query:  MSRSQGPSSLKRKRPDSS--SGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MSRSQGPSSLKRKRP+ +   GGALIEHEKVLYDLICSKQSMGIWIGD+KRETKY D++VTKSLKALQA+G+IKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSRSQGPSSLKRKRPDSS--SGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGE
        GNWYS+GKLDREYI+TLKGFCARMIQKMKVATIEGIVD+FKKSGASKVDLSREQI+EIVNALVLDNEVMEVKSTG+GEFDFIP+GKICYK YAK GVKGE
Subjt:  GNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGE

Query:  PKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        PKTGAMAS PCGVCPRI+HCTPNG+ISPRTCVYYTKWL+F
Subjt:  PKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

TrEMBL top hitse value%identityAlignment
A0A1S3BL06 DNA-directed RNA polymerase III subunit rpc6-like2.1e-10578.6Show/hide
Query:  MSRSQGPSSLKRKRPD----SSSGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKEL
        MS+SQGPSSLKRKRPD    +SSGGALI  EKVLYDLICSKQSMGI   D+KRETK+A+S+VTKSLK+LQ KG+IK+V+HYQNKGKKFYLS DFEP+KEL
Subjt:  MSRSQGPSSLKRKRPD----SSSGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKEL

Query:  TGGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYK-CYAKGGV
        TGGNWY +G+LD++YINTLK  CARMIQ+ K+ TIEGIV+SFK+SGA KV+LSREQI+EIVNALVLDN+VMEVKS+G GEF+FIPIGKICYK C   GG+
Subjt:  TGGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYK-CYAKGGV

Query:  KGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        KGEPK GAMASIPCGVCPRI++CTPNG+ISP TCVYYTKWLDF
Subjt:  KGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

A0A6J1D758 DNA-directed RNA polymerase III subunit rpc6 isoform X29.9e-11199.5Show/hide
Query:  MGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFK
        MGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLDREYINTLKGFC RMIQKMKVATIEGIVDSFK
Subjt:  MGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFK

Query:  KSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        KSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
Subjt:  KSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

A0A6J1D8D1 DNA-directed RNA polymerase III subunit rpc6 isoform X13.2e-13399.58Show/hide
Query:  MSRSQGPSSLKRKRPDSSSGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGN
        MSRSQGPSSLKRKRPDSSSGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGN
Subjt:  MSRSQGPSSLKRKRPDSSSGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGN

Query:  WYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGEPK
        WYSEGKLDREYINTLKGFC RMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGEPK
Subjt:  WYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGEPK

Query:  TGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        TGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
Subjt:  TGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

A0A6J1G553 DNA-directed RNA polymerase III subunit rpc62.8e-12190Show/hide
Query:  MSRSQGPSSLKRKRPDSS--SGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MSRSQGPSSLKRKRP+ +   GGALIEHEKVLYDLICSKQSMGIWIGD+KRETKY D++VTKSLKALQ +G+IKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSRSQGPSSLKRKRPDSS--SGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGE
        GNWYS+GKLDREYI+TLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQI+EIVNALVLDNEVMEVKSTG+GEFDFIP+GKICYK YAK GVKGE
Subjt:  GNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGE

Query:  PKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        PKTGAMAS PCGVCPRI+HCTPNG+ISPRTCVYYTKWL+F
Subjt:  PKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

A0A6J1I599 DNA-directed RNA polymerase III subunit rpc62.1e-12190Show/hide
Query:  MSRSQGPSSLKRKRPDSS--SGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MSRSQGPSSLKRKRP+ +   GGALIEHEKVLYDLICSKQSMGIWIGD+KRETKY D++VTKSLKALQA+G+IKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSRSQGPSSLKRKRPDSS--SGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGE
        GNWYS+GKLDREYI+TLKGFCARMIQKMKVATIEGIVD+FKKSGASKVDLSREQI+EIVNALVLDNEVMEVKSTG+GEFDFIP+GKICYK YAK GVKGE
Subjt:  GNWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGE

Query:  PKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        PKTGAMAS PCGVCPRI+HCTPNG+ISPRTCVYYTKWL+F
Subjt:  PKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

SwissProt top hitse value%identityAlignment
P91529 Probable DNA-directed RNA polymerase III subunit RPC62.9e-1928.33Show/hide
Query:  QGPSSLKRKRPDSSSGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSE
        Q P  + R + ++S   A  E E+V+Y LI   ++ GIWI +++  +      + K+LK+L+ K +IK ++      +K Y+    EP   LTGG +YS+
Subjt:  QGPSSLKRKRPDSSSGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSE

Query:  GKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLD--------NEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVK
         +LD E INTL   C       +   I+   ++ +    +     +E  Q I    VL+          ++EV +   G  +    GKI   C  +  + 
Subjt:  GKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLD--------NEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVK

Query:  GEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWL
               + S+PC +CP +  C P  VISP++C Y   WL
Subjt:  GEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWL

Q2T9S3 DNA-directed RNA polymerase III subunit RPC61.5e-2329.92Show/hide
Query:  DSSSGGAL---IEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLDREYI
        DS + G +      EK++Y +I    + GIW  DI+ ++    + + K LK L++K +IK V+      KK Y+  + +P + +TGG WYS+   + E++
Subjt:  DSSSGGAL---IEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLDREYI

Query:  NTLKGFCARMIQKMKVATIEGIVD-------SFKKS----------GASKVDLSREQIQEIVNALVLDNEV-MEVKSTGSGEFDFIPIGKICYKCYAKGG
          L   C + +Q       E   +       SF  S          G SKV+LS E I+ I+N L+ D +V M + +   G    +      Y+  +   
Subjt:  NTLKGFCARMIQKMKVATIEGIVD-------SFKKS----------GASKVDLSREQIQEIVNALVLDNEV-MEVKSTGSGEFDFIPIGKICYKCYAKGG

Query:  VKGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
            P TG +   PCG+CP    C   G ISP  C+Y T+WL+F
Subjt:  VKGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

Q86JM3 DNA-directed RNA polymerase III subunit rpc61.0e-2428.81Show/hide
Query:  MSRSQGPSSLKRKRP-DSSSGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGG
        +  S   +S K   P D +    L   + ++Y LI +  + G W  ++K  + Y    +TK LK L+++ +IK V+  Q+  KK Y+  + EPS+E+TGG
Subjt:  MSRSQGPSSLKRKRP-DSSSGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGG

Query:  NWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKK--SGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGK---ICYKCYAKGG
          YS+   D +YI  +K      +       +  I+   +K    A+   L  E IQ +VN ++ D ++ E++ T  G      +G+   I YK      
Subjt:  NWYSEGKLDREYINTLKGFCARMIQKMKVATIEGIVDSFKK--SGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGK---ICYKCYAKGG

Query:  VKGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLD
         K         ++PCG CP    C+ NG++SP+ CVY+ ++L+
Subjt:  VKGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLD

Q921X6 DNA-directed RNA polymerase III subunit RPC63.4e-2330.33Show/hide
Query:  DSSSGGAL---IEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLDREYI
        DS + G +      EK++Y +I    + GIW  DI+ ++    + + K LK L++K +IK V+      KK Y+  + +P + +TGG WYS+   + E++
Subjt:  DSSSGGAL---IEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLDREYI

Query:  NTLKGFCARMIQKMKVATIEGIVD-------SFKKS----------GASKVDLSREQIQEIVNALVLDNEV-MEVKSTGSGEFDFIPIGKICYKCYAKGG
          L   C + +Q       E   +       SF  S          G SKV+LS E I+ I+N L+ D +V M + +   G    +      Y+  A   
Subjt:  NTLKGFCARMIQKMKVATIEGIVD-------SFKKS----------GASKVDLSREQIQEIVNALVLDNEV-MEVKSTGSGEFDFIPIGKICYKCYAKGG

Query:  VKGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        +   P TG + + PCG+CP    C   G ISP  C+Y T+WL+F
Subjt:  VKGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

Q9H1D9 DNA-directed RNA polymerase III subunit RPC63.4e-2329.92Show/hide
Query:  DSSSGGAL---IEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLDREYI
        DS + G +      EK++Y +I    + GIW  DI+ ++    + + K LK L++K +IK V+      KK Y+  + +P + +TGG WYS+   + E++
Subjt:  DSSSGGAL---IEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLDREYI

Query:  NTLKGFCARMIQKMKVATIEGIVD-------SFKKS----------GASKVDLSREQIQEIVNALVLDNEV-MEVKSTGSGEFDFIPIGKICYKCYAKGG
          L   C + +Q       E   +       SF  S          G SKV+LS E I+ I+N L+ D +V M + +   G    +      Y+      
Subjt:  NTLKGFCARMIQKMKVATIEGIVD-------SFKKS----------GASKVDLSREQIQEIVNALVLDNEV-MEVKSTGSGEFDFIPIGKICYKCYAKGG

Query:  VKGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
            P TG +   PCG+CP    C   G ISP  C+Y T+WL+F
Subjt:  VKGEPKTGAMASIPCGVCPRISHCTPNGVISPRTCVYYTKWLDF

Arabidopsis top hitse value%identityAlignment
AT5G23710.1 DNA binding;DNA-directed RNA polymerases1.4e-5348.71Show/hide
Query:  KRKRPD-SSSGGALIE-HEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLD
        KRKRPD  SSGG L E HEK L DLI   Q  G  + ++KRE     +IVT+ + +L+ K +IK V +  NKG K YL+ +FEP  ELTGG WY++G LD
Subjt:  KRKRPD-SSSGGALIE-HEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLD

Query:  REYINTLKGFCARMIQ--KMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGEPKTGAMAS
           I  LK  C  +++  + +V T+E +   F K    +  LS +Q +EI+  L+LDN +MEVKS G  EF    IG++CY+   K    GEP+ GA AS
Subjt:  REYINTLKGFCARMIQ--KMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGEPKTGAMAS

Query:  IPCGVCPRISHCTPNGVISPRTCVYYTKWLDF
        IPCGVCP I+ C+P+GVISP TCVY+ KWLDF
Subjt:  IPCGVCPRISHCTPNGVISPRTCVYYTKWLDF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGATCACAAGGACCTTCATCACTTAAAAGAAAAAGGCCAGACTCAAGCTCTGGAGGAGCTCTGATCGAGCATGAAAAAGTGCTCTATGATCTGATTTGCAGCAA
ACAAAGCATGGGGATTTGGATTGGAGACATTAAAAGAGAAACAAAGTATGCTGACAGTATAGTAACTAAATCACTCAAAGCCCTCCAAGCCAAAGGCATGATAAAACTGG
TTGAACATTATCAGAACAAAGGGAAGAAATTCTACCTGTCGAAAGATTTCGAGCCATCGAAAGAACTAACGGGCGGTAATTGGTATAGCGAGGGGAAGCTCGACAGGGAA
TACATCAATACTCTTAAAGGATTCTGTGCAAGAATGATACAAAAGATGAAGGTGGCTACAATTGAAGGGATTGTGGACTCTTTCAAAAAGAGTGGAGCGTCCAAGGTGGA
CTTGTCTAGAGAGCAAATTCAGGAGATTGTAAATGCTCTGGTTTTGGACAATGAAGTCATGGAGGTGAAGAGCACTGGATCAGGGGAATTTGATTTTATCCCTATTGGGA
AGATCTGTTATAAGTGCTATGCCAAAGGAGGTGTCAAAGGGGAGCCAAAAACGGGGGCCATGGCTTCCATTCCTTGTGGAGTCTGTCCTCGGATTAGTCATTGTACGCCA
AACGGCGTCATTTCGCCTAGAACATGCGTGTACTACACCAAGTGGTTAGATTTT
mRNA sequenceShow/hide mRNA sequence
ATGAGCAGATCACAAGGACCTTCATCACTTAAAAGAAAAAGGCCAGACTCAAGCTCTGGAGGAGCTCTGATCGAGCATGAAAAAGTGCTCTATGATCTGATTTGCAGCAA
ACAAAGCATGGGGATTTGGATTGGAGACATTAAAAGAGAAACAAAGTATGCTGACAGTATAGTAACTAAATCACTCAAAGCCCTCCAAGCCAAAGGCATGATAAAACTGG
TTGAACATTATCAGAACAAAGGGAAGAAATTCTACCTGTCGAAAGATTTCGAGCCATCGAAAGAACTAACGGGCGGTAATTGGTATAGCGAGGGGAAGCTCGACAGGGAA
TACATCAATACTCTTAAAGGATTCTGTGCAAGAATGATACAAAAGATGAAGGTGGCTACAATTGAAGGGATTGTGGACTCTTTCAAAAAGAGTGGAGCGTCCAAGGTGGA
CTTGTCTAGAGAGCAAATTCAGGAGATTGTAAATGCTCTGGTTTTGGACAATGAAGTCATGGAGGTGAAGAGCACTGGATCAGGGGAATTTGATTTTATCCCTATTGGGA
AGATCTGTTATAAGTGCTATGCCAAAGGAGGTGTCAAAGGGGAGCCAAAAACGGGGGCCATGGCTTCCATTCCTTGTGGAGTCTGTCCTCGGATTAGTCATTGTACGCCA
AACGGCGTCATTTCGCCTAGAACATGCGTGTACTACACCAAGTGGTTAGATTTT
Protein sequenceShow/hide protein sequence
MSRSQGPSSLKRKRPDSSSGGALIEHEKVLYDLICSKQSMGIWIGDIKRETKYADSIVTKSLKALQAKGMIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSEGKLDRE
YINTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIQEIVNALVLDNEVMEVKSTGSGEFDFIPIGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTP
NGVISPRTCVYYTKWLDF