; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS014126 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014126
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDEAD-box ATP-dependent RNA helicase 36
Genome locationscaffold5:788345..788731
RNA-Seq ExpressionMS014126
SyntenyMS014126
Gene Ontology termsGO:0006364 - rRNA processing (biological process)
GO:0009561 - megagametogenesis (biological process)
GO:0009791 - post-embryonic development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0090406 - pollen tube (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR011545 - DEAD/DEAH box helicase domain
IPR014001 - Helicase superfamily 1/2, ATP-binding domain
IPR014014 - RNA helicase, DEAD-box type, Q motif
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605347.1 DEAD-box ATP-dependent RNA helicase 36, partial [Cucurbita argyrosperma subsp. sororia]5.6e-6296.12Show/hide
Query:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS
        TFADLGLSEWIV+TCKELAM+KPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQ+LSETPFGVFALVVTPTRELAYQLAEQFRALGSSL+LRCS
Subjt:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS

Query:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV
        VVVGGMDMLNQ QSLLKRPHIVIATPGRV
Subjt:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV

XP_022149766.1 DEAD-box ATP-dependent RNA helicase 36 [Momordica charantia]1.6e-64100Show/hide
Query:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS
        TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS
Subjt:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS

Query:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV
        VVVGGMDMLNQAQSLLKRPHIVIATPGRV
Subjt:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV

XP_022947338.1 DEAD-box ATP-dependent RNA helicase 36 [Cucurbita moschata]5.6e-6296.12Show/hide
Query:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS
        TFADLGLSEWIV+TCKELAM+KPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQ+LSETPFGVFALVVTPTRELAYQLAEQFRALGSSL+LRCS
Subjt:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS

Query:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV
        VVVGGMDMLNQ QSLLKRPHIVIATPGRV
Subjt:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV

XP_023007160.1 DEAD-box ATP-dependent RNA helicase 36 [Cucurbita maxima]5.6e-6296.12Show/hide
Query:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS
        TFADLGLSEWIV+TCKELAM+KPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQ+LSETPFGVFALVVTPTRELAYQLAEQFRALGSSL+LRCS
Subjt:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS

Query:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV
        VVVGGMDMLNQ QSLLKRPHIVIATPGRV
Subjt:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV

XP_023534745.1 DEAD-box ATP-dependent RNA helicase 36 [Cucurbita pepo subsp. pepo]5.6e-6296.12Show/hide
Query:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS
        TFADLGLSEWIV+TCKELAM+KPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQ+LSETPFGVFALVVTPTRELAYQLAEQFRALGSSL+LRCS
Subjt:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS

Query:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV
        VVVGGMDMLNQ QSLLKRPHIVIATPGRV
Subjt:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV

TrEMBL top hitse value%identityAlignment
A0A0A0KD72 Uncharacterized protein3.0e-6193.02Show/hide
Query:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS
        TFADLGLSEWI++TCKEL M+KPTAVQTHCIPKILAGLDVLG+AQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGS L+LRCS
Subjt:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS

Query:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV
        VVVGGMDMLNQ QSLLKRPHIVIATPGR+
Subjt:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV

A0A5D3CBL8 DEAD-box ATP-dependent RNA helicase 361.5e-6093.02Show/hide
Query:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS
        TF+DLGLSEWIV+TCKEL M+KPTAVQTHCIPKILAGLDVLG+AQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGS L+LRCS
Subjt:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS

Query:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV
        VVVGGMDML+Q QSLLKRPHIVIATPGRV
Subjt:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV

A0A6J1D9D5 DEAD-box ATP-dependent RNA helicase 367.6e-65100Show/hide
Query:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS
        TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS
Subjt:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS

Query:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV
        VVVGGMDMLNQAQSLLKRPHIVIATPGRV
Subjt:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV

A0A6J1G6B4 DEAD-box ATP-dependent RNA helicase 362.7e-6296.12Show/hide
Query:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS
        TFADLGLSEWIV+TCKELAM+KPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQ+LSETPFGVFALVVTPTRELAYQLAEQFRALGSSL+LRCS
Subjt:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS

Query:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV
        VVVGGMDMLNQ QSLLKRPHIVIATPGRV
Subjt:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV

A0A6J1L281 DEAD-box ATP-dependent RNA helicase 362.7e-6296.12Show/hide
Query:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS
        TFADLGLSEWIV+TCKELAM+KPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQ+LSETPFGVFALVVTPTRELAYQLAEQFRALGSSL+LRCS
Subjt:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS

Query:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV
        VVVGGMDMLNQ QSLLKRPHIVIATPGRV
Subjt:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV

SwissProt top hitse value%identityAlignment
Q4FZF3 Probable ATP-dependent RNA helicase DDX494.6e-4363.28Show/hide
Query:  FADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCSV
        FA++GLS W+V  C++L +++PT VQ  CIP IL G D LG A+TGSGKTAAF LPILQ+LSE P+G+F LV+TPTRELAYQ+AEQFR LG  L L+  +
Subjt:  FADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCSV

Query:  VVGGMDMLNQAQSLLKRPHIVIATPGRV
        +VGGMDM+ QA  L ++PH+VIATPGR+
Subjt:  VVGGMDMLNQAQSLLKRPHIVIATPGRV

Q55BR9 Probable ATP-dependent RNA helicase ddx492.4e-3955.81Show/hide
Query:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS
        TF +LGL+ W+V  CK+L  + P+ +Q + IP+IL G D++  A+TGSGKTA+FA+PIL +LSE P+GVFA+++TPTRELA Q+ EQF A+G+ +++ CS
Subjt:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS

Query:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV
        VV+GG+D + QA  L KRPHI++ATPGR+
Subjt:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV

Q8L4E9 DEAD-box ATP-dependent RNA helicase 361.4e-4466.67Show/hide
Query:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS
        TFA+LGLS+W+V  C  L MR PTAVQ  CIP+ L G DVLG+A+TGSGKTAAFALPIL RL E P+GV AL + PTRELA QLAEQFRALG+ L LRC 
Subjt:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCS

Query:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV
          +GG D L QA+ L +RPH+V+ATPGR+
Subjt:  VVVGGMDMLNQAQSLLKRPHIVIATPGRV

Q9SA27 DEAD-box ATP-dependent RNA helicase 361.5e-5480.47Show/hide
Query:  FADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCSV
        F  LGL+EW V TCKEL MRKPT VQTHC+PKILAG DVLGLAQTGSGKTAAFALPIL RL+E P+GVFALVVTPTRELA+QLAEQF+ALGS L+LRCSV
Subjt:  FADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCSV

Query:  VVGGMDMLNQAQSLLKRPHIVIATPGRV
        +VGGMDML Q  SL+ RPHIVI TPGR+
Subjt:  VVGGMDMLNQAQSLLKRPHIVIATPGRV

Q9Y6V7 Probable ATP-dependent RNA helicase DDX492.7e-4364.06Show/hide
Query:  FADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCSV
        FA+LGLS W+V  C++L +++PT VQ  CIP IL G D LG A+TGSGKTAAF LPILQ+LSE P+G+F LV+TPTRELAYQ+AEQFR LG  L L+  +
Subjt:  FADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCSV

Query:  VVGGMDMLNQAQSLLKRPHIVIATPGRV
        +VGGMDM+ QA  L ++PH+VIATPGR+
Subjt:  VVGGMDMLNQAQSLLKRPHIVIATPGRV

Arabidopsis top hitse value%identityAlignment
AT1G16280.1 RNA helicase 361.1e-5580.47Show/hide
Query:  FADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCSV
        F  LGL+EW V TCKEL MRKPT VQTHC+PKILAG DVLGLAQTGSGKTAAFALPIL RL+E P+GVFALVVTPTRELA+QLAEQF+ALGS L+LRCSV
Subjt:  FADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCSV

Query:  VVGGMDMLNQAQSLLKRPHIVIATPGRV
        +VGGMDML Q  SL+ RPHIVI TPGR+
Subjt:  VVGGMDMLNQAQSLLKRPHIVIATPGRV

AT1G77030.1 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases1.2e-2242.31Show/hide
Query:  FADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSE--TPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRC
        F  L L   +    K+   + PT +Q   +P IL+G+DV+ +A+TGSGKTAAF +P+L++L +     GV AL+++PTR+LA Q  +  + LG    LR 
Subjt:  FADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSE--TPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRC

Query:  SVVVGGMDMLNQAQSLLKRPHIVIATPGRV
        S++VGG  M +Q + L K P ++IATPGR+
Subjt:  SVVVGGMDMLNQAQSLLKRPHIVIATPGRV

AT2G47330.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein4.2e-2341.79Show/hide
Query:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETP-----FGVFALVVTPTRELAYQLAEQFRALGSSL
        TF D G S  I+   K+ A  KPTA+Q   +P +L+G DV+G+A+TGSGKTAAF LP++  + + P      G   ++  PTRELA+Q+  + +    + 
Subjt:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETP-----FGVFALVVTPTRELAYQLAEQFRALGSSL

Query:  HLRCSVVVGGMDMLNQAQSLLKRPHIVIATPGRV
         LR S V GGM    Q + L     IV+ATPGR+
Subjt:  HLRCSVVVGGMDMLNQAQSLLKRPHIVIATPGRV

AT4G16630.1 DEA(D/H)-box RNA helicase family protein8.1e-2746.97Show/hide
Query:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFA---LVVTPTRELAYQLAEQFRALGSSLHL
        TF +L LS  ++R C+ L  +KPT +Q  CIP  L G D+   A TGSGKTAAFALP L+RL   P  VFA   L++TPTRELA Q+    + L     +
Subjt:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFA---LVVTPTRELAYQLAEQFRALGSSLHL

Query:  RCSVVVGGMDMLNQAQSLLKRPHIVIATPGRV
        +C ++VGG+ +  Q   L   P IV+ATPGR+
Subjt:  RCSVVVGGMDMLNQAQSLLKRPHIVIATPGRV

AT5G60990.1 DEA(D/H)-box RNA helicase family protein1.1e-3450.35Show/hide
Query:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPF------------GVFALVVTPTRELAYQLAEQF
        TFA+LG+ E +V+ C+ L  + P+ +Q   +P  L G DV+GLAQTGSGKT AFA+PILQ L E  +              FA V++PTRELA Q+AEQF
Subjt:  TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPF------------GVFALVVTPTRELAYQLAEQF

Query:  RALGSSLHLRCSVVVGGMDMLNQAQSLLKRPHIVIATPGRV
         ALG+ + LRC+V+VGG+D + Q  +L KRPH+++ATPGR+
Subjt:  RALGSSLHLRCSVVVGGMDMLNQAQSLLKRPHIVIATPGRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACATTCGCCGACCTCGGCTTGTCGGAATGGATCGTCCGCACCTGCAAAGAACTGGCTATGCGGAAGCCCACGGCGGTTCAAACCCACTGCATCCCGAAGATTCTGGCTGG
CCTTGACGTACTTGGTCTTGCCCAGACCGGGAGTGGCAAGACTGCTGCGTTTGCATTGCCAATTCTTCAACGCCTTTCGGAGACCCCTTTTGGCGTCTTCGCGTTGGTGG
TCACTCCTACTAGAGAATTGGCCTATCAATTGGCGGAGCAGTTTAGGGCTCTCGGTTCCTCCTTGCATTTGCGATGCTCTGTGGTTGTTGGAGGAATGGATATGTTGAAC
CAGGCGCAGAGTTTGTTGAAGAGGCCTCACATTGTAATTGCAACACCGGGGAGGGTT
mRNA sequenceShow/hide mRNA sequence
ACATTCGCCGACCTCGGCTTGTCGGAATGGATCGTCCGCACCTGCAAAGAACTGGCTATGCGGAAGCCCACGGCGGTTCAAACCCACTGCATCCCGAAGATTCTGGCTGG
CCTTGACGTACTTGGTCTTGCCCAGACCGGGAGTGGCAAGACTGCTGCGTTTGCATTGCCAATTCTTCAACGCCTTTCGGAGACCCCTTTTGGCGTCTTCGCGTTGGTGG
TCACTCCTACTAGAGAATTGGCCTATCAATTGGCGGAGCAGTTTAGGGCTCTCGGTTCCTCCTTGCATTTGCGATGCTCTGTGGTTGTTGGAGGAATGGATATGTTGAAC
CAGGCGCAGAGTTTGTTGAAGAGGCCTCACATTGTAATTGCAACACCGGGGAGGGTT
Protein sequenceShow/hide protein sequence
TFADLGLSEWIVRTCKELAMRKPTAVQTHCIPKILAGLDVLGLAQTGSGKTAAFALPILQRLSETPFGVFALVVTPTRELAYQLAEQFRALGSSLHLRCSVVVGGMDMLN
QAQSLLKRPHIVIATPGRV