CuGenDBv2

Gene ID	MS014131
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L20
Genome location	scaffold5:816807..818878
RNA-Seq Expression	MS014131
Synteny	MS014131
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR005813 - Ribosomal protein L20 IPR035566 - Ribosomal protein L20, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004139908.1 uncharacterized protein LOC101216644 [Cucumis sativus]

4.6e-61

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVLPPKKDGISIVV
        ISRNAFPGNKNVV PPKKD  S++V
Subjt:  ISRNAFPGNKNVVLPPKKDGISIVV

XP_022149620.1 uncharacterized protein LOC111018005 [Momordica charantia]

2.9e-63

100

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVLPPKKDGISIVV
        ISRNAFPGNKNVVLPPKKDGISIVV
Subjt:  ISRNAFPGNKNVVLPPKKDGISIVV

XP_022943497.1 uncharacterized protein LOC111448251 [Cucurbita moschata]

2.7e-61

95.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVLPPKKDGISIVV
        ISRNAFPGNKNVV PPKKD +S++V
Subjt:  ISRNAFPGNKNVVLPPKKDGISIVV

XP_022985864.1 uncharacterized protein LOC111483787 [Cucurbita maxima]

2.1e-61

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVLPPKKDGISIVV
        ISRNAFPGNKNVV PPKKD +S+VV
Subjt:  ISRNAFPGNKNVVLPPKKDGISIVV

XP_023007267.1 uncharacterized protein LOC111499805 [Cucurbita maxima]

1.2e-61

95.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVLPPKKDGISIVV
        ISRNAFPGNKNVV PPKKDGIS+V+
Subjt:  ISRNAFPGNKNVVLPPKKDGISIVV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KD68 50S ribosomal protein L20

2.2e-61

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVLPPKKDGISIVV
        ISRNAFPGNKNVV PPKKD  S++V
Subjt:  ISRNAFPGNKNVVLPPKKDGISIVV

A0A6J1D684 50S ribosomal protein L20

1.4e-63

100

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVLPPKKDGISIVV
        ISRNAFPGNKNVVLPPKKDGISIVV
Subjt:  ISRNAFPGNKNVVLPPKKDGISIVV

A0A6J1FUI3 50S ribosomal protein L20

1.3e-61

95.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVLPPKKDGISIVV
        ISRNAFPGNKNVV PPKKD +S++V
Subjt:  ISRNAFPGNKNVVLPPKKDGISIVV

A0A6J1JCG1 50S ribosomal protein L20

9.9e-62

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVLPPKKDGISIVV
        ISRNAFPGNKNVV PPKKD +S+VV
Subjt:  ISRNAFPGNKNVVLPPKKDGISIVV

A0A6J1KY75 50S ribosomal protein L20

5.8e-62

95.2

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKEN+QLNRKVLSE+SMHEPYSFK+LVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVLPPKKDGISIVV
        ISRNAFPGNKNVV PPKKDGIS+V+
Subjt:  ISRNAFPGNKNVVLPPKKDGISIVV

SwissProt top hits

e value

%identity

Alignment

B6IPJ8 50S ribosomal protein L20

4.6e-32

64.36

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN
        K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RLHG+ Y  FMHGL +  ++++RKVLS+I+  EP SFKALV+ ++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Q11KK1 50S ribosomal protein L20

2.4e-28

56.07

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN
        K+ K AKGF GR KN IRIA++ VEK+LQY+YRDR+N+KR+ R+LWIQRINA TR HG+ YG F+ GL K  ++++RKVL+++++HEP +F ALV  S+ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN

Query:  AFPGNKN
        +    KN
Subjt:  AFPGNKN

Q2GHR2 50S ribosomal protein L20

1.4e-28

60.4

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL   NV LNRKVL++++++    FK +VD+ + 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Q3YSX0 50S ribosomal protein L20

2.8e-29

60.4

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN
        K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL   N+ LNRKVL++++++   +FK +VDI++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Q5FH69 50S ribosomal protein L20

3.1e-28

56.44

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Query:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN
        K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ Y +F++GL   N+ LNRK+L+++++H   +FK +VD+++ 
Subjt:  KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRN

Query:  A
        A
Subjt:  A

Arabidopsis top hits

e value

%identity

Alignment

AT1G16740.1 Ribosomal protein L20

1.4e-55

83.06

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Query:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD
        MNK +IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R HGVNYGNF+HGLMKEN+QLNRKVLSE+SMHEPYSFKALVD
Subjt:  MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVD

Query:  ISRNAFPGNKNVVLPPKKDGISIV
        +SR +FPGNKNVV   +K  IS +
Subjt:  ISRNAFPGNKNVVLPPKKDGISIV

ATCG00660.1 ribosomal protein L20

5.1e-10

39.33

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Query:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLMKENVQLNRKVLSEISM
        + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     GV  +Y  F+H L K+ + LNRK+L++I++
Subjt:  KDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLMKENVQLNRKVLSEISM

Sequences

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CDS sequence

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ATGAACAAGGACAAGATATTTAAGCTAGCCAAGGGTTTCAGAGGAAGGGCCAAGAATTGCATAAGGATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCCTACAG
GGACCGTCGCAATAAGAAGCGCGACATGCGCTCCCTTTGGATACAACGCATCAATGCTGGTACACGCCTTCATGGGGTAAATTATGGCAATTTTATGCATGGGCTGATGA
AGGAGAACGTTCAACTAAACAGAAAAGTATTATCAGAGATCTCAATGCACGAACCTTATAGTTTCAAGGCCCTGGTAGACATCTCTCGTAATGCATTTCCTGGAAACAAG
AATGTAGTGCTTCCCCCCAAGAAGGATGGCATTTCCATAGTTGTT

mRNA sequence

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Protein sequence

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MNKDKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLMKENVQLNRKVLSEISMHEPYSFKALVDISRNAFPGNK
NVVLPPKKDGISIVV

MS014131 (gene) of Bitter gourd (TR) v1 genome