; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS014170 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014170
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionBiogenesis of lysosome-related organelles complex 1 subunit 1
Genome locationscaffold5:1136110..1138190
RNA-Seq ExpressionMS014170
SyntenyMS014170
Gene Ontology termsGO:0051641 - cellular localization (biological process)
GO:0031083 - BLOC-1 complex (cellular component)
InterPro domainsIPR009395 - Biogenesis of lysosome-related organelles complex 1 subunit 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149781.1 biogenesis of lysosome-related organelles complex 1 subunit 1 [Momordica charantia]4.6e-79100Show/hide
Query:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL
        MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL
Subjt:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL

Query:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD
        AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD
Subjt:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD

XP_022948128.1 biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita moschata]3.4e-6684.52Show/hide
Query:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL
        M+SPSG SR HLP  RNRG  QSE ERLS++ GGLEASL QMV+DHQ+ASLKLR++SEKAKKDAIQKAVRVSDLLV AVNGGVQESFVNQKLIELEIRAL
Subjt:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL

Query:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD
        + TI+RFMKQTDQWL  THALNTA+KEIGDFENWIKTIDFDCKSIT AIHNIYQD
Subjt:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD

XP_023007259.1 biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita maxima]8.5e-6583.23Show/hide
Query:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL
        M+SPSG SR H P ARNRG  QSE ERLS++ GGLEASL QMV+DHQ+ASLKLR++SEKAKKDAIQKA+RVSDLLV AVNGGVQ SFVNQKLIELEIRAL
Subjt:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL

Query:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD
        + TI+RFMKQTDQWL  THALNTA+KEIGDFENWIKTIDFDCKSIT AIHNIYQD
Subjt:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD

XP_023534753.1 biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita pepo subsp. pepo]1.7e-6583.87Show/hide
Query:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL
        M+SPSG SR HLP  RNRG  QSE ERLS++ GGLE SL QMV+DHQ+ASLKLR++SEKAKKDAIQKAVRVSDLLV AVNGGVQESFVNQKLIELEIRAL
Subjt:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL

Query:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD
        + TI+RFMKQTDQWL  THALNTA+KEIGDFENWIKTIDFDCKSIT AIHNIYQD
Subjt:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD

XP_038900751.1 biogenesis of lysosome-related organelles complex 1 subunit 1 [Benincasa hispida]1.1e-6483.87Show/hide
Query:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL
        M+S SGPSRP LPVA NRG  QSETE L++E GGLEASLLQMV+DH +ASLKLR++SEKAKKDAIQKAVRVSDLL  AVNGGVQ+SFVNQKLIELEIRAL
Subjt:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL

Query:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD
        A TI+RF KQTDQWL  THALNTA+KEIGDFENWIKTIDFDCKSIT AIHNIYQD
Subjt:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD

TrEMBL top hitse value%identityAlignment
A0A1S3CKJ9 Biogenesis of lysosome-related organelles complex 1 subunit 12.2e-6382.58Show/hide
Query:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL
        M S  G SRP LPV  NRG  QS+TERLS++ GGLE SLLQMV DHQ+ASLKLR++SEKAKKDAIQKAVRVSDLLV  VNGGVQESFVNQKLIELEIRAL
Subjt:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL

Query:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD
        A TI+RF KQTDQWL  THALNTA+KEIGDFENWIKTIDFDCKSIT AIHNIYQD
Subjt:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD

A0A6A6L8U3 Biogenesis of lysosome-related organelles complex 1 subunit 12.3e-5274.48Show/hide
Query:  PHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMK
        P LP+AR R     ETE+   E GGLEASLLQ++HDH   SL+LR+ +EKAKKDAI+KAVRVSDLL+ AVNGGVQESF+N+K IELEIRALAATISRFM+
Subjt:  PHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMK

Query:  QTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQ
        QTDQWLT THA+NTAIKEIGDFENW+KT++FDCKSI AAI NI+Q
Subjt:  QTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQ

A0A6J1D9F5 Biogenesis of lysosome-related organelles complex 1 subunit 12.2e-79100Show/hide
Query:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL
        MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL
Subjt:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL

Query:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD
        AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD
Subjt:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD

A0A6J1G8I4 Biogenesis of lysosome-related organelles complex 1 subunit 11.7e-6684.52Show/hide
Query:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL
        M+SPSG SR HLP  RNRG  QSE ERLS++ GGLEASL QMV+DHQ+ASLKLR++SEKAKKDAIQKAVRVSDLLV AVNGGVQESFVNQKLIELEIRAL
Subjt:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL

Query:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD
        + TI+RFMKQTDQWL  THALNTA+KEIGDFENWIKTIDFDCKSIT AIHNIYQD
Subjt:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD

A0A6J1L4G4 Biogenesis of lysosome-related organelles complex 1 subunit 14.1e-6583.23Show/hide
Query:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL
        M+SPSG SR H P ARNRG  QSE ERLS++ GGLEASL QMV+DHQ+ASLKLR++SEKAKKDAIQKA+RVSDLLV AVNGGVQ SFVNQKLIELEIRAL
Subjt:  MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRAL

Query:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD
        + TI+RFMKQTDQWL  THALNTA+KEIGDFENWIKTIDFDCKSIT AIHNIYQD
Subjt:  AATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD

SwissProt top hitse value%identityAlignment
O22929 Biogenesis of lysosome-related organelles complex 1 subunit 12.3e-4157.64Show/hide
Query:  LPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQT
        L  AR R +   E E+   E+  LE+SLLQ++ D++ +SL+LR+ +E+++K+AI+ A R +DLLV AVNGGV+E FVN+K IE EIR LA T+++F KQT
Subjt:  LPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQT

Query:  DQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD
        DQWL  THA+N+A+KEIGDFENW+KT++FDCK ITAAI NI++D
Subjt:  DQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD

P78537 Biogenesis of lysosome-related organelles complex 1 subunit 14.4e-1632.76Show/hide
Query:  LLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTI
        L +++ +HQ    + ++  EK +++AI  A  +++ LV  +N GV ++++NQ+ ++ E++ L    ++F KQT QW+      N A+KEIGD ENW ++I
Subjt:  LLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTI

Query:  DFDCKSITAAIHNIYQ
        + D ++I  A+  +Y+
Subjt:  DFDCKSITAAIHNIYQ

Q0VFD8 Biogenesis of lysosome-related organelles complex 1 subunit 11.8e-1735.34Show/hide
Query:  LLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTI
        L +++ +HQ    + ++  EK +KDAI  A  +++ LV  +N GV +++VNQ+ ++ E++ L    ++F KQT QW++     N A+KEIGD ENW ++I
Subjt:  LLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTI

Query:  DFDCKSITAAIHNIYQ
        + D + I  A+  +Y+
Subjt:  DFDCKSITAAIHNIYQ

Q2NKW0 Biogenesis of lysosome-related organelles complex 1 subunit 14.4e-1632.76Show/hide
Query:  LLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTI
        L +++ +HQ    + ++  EK +++AI  A  +++ LV  +N GV ++++NQ+ ++ E++ L    ++F KQT QW+      N A+KEIGD ENW ++I
Subjt:  LLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTI

Query:  DFDCKSITAAIHNIYQ
        + D ++I  A+  +Y+
Subjt:  DFDCKSITAAIHNIYQ

Q54VX7 Biogenesis of lysosome-related organelles complex 1 subunit 12.3e-1741.74Show/hide
Query:  LLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTI
        L ++V DHQ    KL++++E  KK+AI     V++ L+ +VN GV   F NQK +E E R L A  ++F KQT+QW+      N ++KEIGD ENW K I
Subjt:  LLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHALNTAIKEIGDFENWIKTI

Query:  DFDCKSITAAIHNIY
        + D  +I+  I  +Y
Subjt:  DFDCKSITAAIHNIY

Arabidopsis top hitse value%identityAlignment
AT2G30330.1 GCN5L1 family protein1.7e-4257.64Show/hide
Query:  LPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQT
        L  AR R +   E E+   E+  LE+SLLQ++ D++ +SL+LR+ +E+++K+AI+ A R +DLLV AVNGGV+E FVN+K IE EIR LA T+++F KQT
Subjt:  LPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQT

Query:  DQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD
        DQWL  THA+N+A+KEIGDFENW+KT++FDCK ITAAI NI++D
Subjt:  DQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTCCGTCAGGGCCATCACGGCCGCACCTCCCCGTAGCGCGTAATCGCGGGATGCTTCAGTCGGAGACTGAGAGATTGAGCAGTGAGGCTGGAGGATTGGAAGC
TTCCTTGCTTCAGATGGTCCACGATCACCAGTTCGCCTCTCTCAAGCTCCGGCAAGACTCCGAGAAGGCGAAGAAGGATGCTATTCAGAAGGCGGTGCGCGTTTCGGATC
TTTTAGTGCATGCTGTGAATGGTGGAGTTCAGGAATCGTTTGTCAACCAGAAGCTGATTGAGCTCGAAATTAGGGCTTTAGCGGCCACGATTTCCCGATTTATGAAGCAG
ACTGATCAATGGCTCACCACTACTCACGCTCTGAATACTGCCATTAAGGAAATTGGAGATTTCGAGAACTGGATAAAGACCATCGATTTTGATTGTAAAAGCATCACTGC
TGCCATCCATAACATTTACCAAGAC
mRNA sequenceShow/hide mRNA sequence
ATGGATTCTCCGTCAGGGCCATCACGGCCGCACCTCCCCGTAGCGCGTAATCGCGGGATGCTTCAGTCGGAGACTGAGAGATTGAGCAGTGAGGCTGGAGGATTGGAAGC
TTCCTTGCTTCAGATGGTCCACGATCACCAGTTCGCCTCTCTCAAGCTCCGGCAAGACTCCGAGAAGGCGAAGAAGGATGCTATTCAGAAGGCGGTGCGCGTTTCGGATC
TTTTAGTGCATGCTGTGAATGGTGGAGTTCAGGAATCGTTTGTCAACCAGAAGCTGATTGAGCTCGAAATTAGGGCTTTAGCGGCCACGATTTCCCGATTTATGAAGCAG
ACTGATCAATGGCTCACCACTACTCACGCTCTGAATACTGCCATTAAGGAAATTGGAGATTTCGAGAACTGGATAAAGACCATCGATTTTGATTGTAAAAGCATCACTGC
TGCCATCCATAACATTTACCAAGAC
Protein sequenceShow/hide protein sequence
MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKAKKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQ
TDQWLTTTHALNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD