; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS014178 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014178
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSWR1 complex subunit 6
Genome locationscaffold5:1191746..1195404
RNA-Seq ExpressionMS014178
SyntenyMS014178
Gene Ontology termsGO:0043486 - histone exchange (biological process)
GO:0000812 - Swr1 complex (cellular component)
GO:0031491 - nucleosome binding (molecular function)
InterPro domainsIPR007529 - Zinc finger, HIT-type
IPR039723 - Vps71/ZNHIT1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010486.1 SWR1 complex subunit 6, partial [Cucurbita argyrosperma subsp. argyrosperma]4.5e-8394.19Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+EL+ENIDDEDASLDDD+ AYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA
        ELLHEA+LESLPP+VPSYLKAAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCSCRCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA

XP_022148456.1 SWR1 complex subunit 6 isoform X1 [Momordica charantia]1.3e-87100Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA
        ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA

XP_022943643.1 SWR1 complex subunit 6 [Cucurbita moschata]4.5e-8394.19Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+EL+ENIDDEDASLDDD+ AYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA
        ELLHEA+LESLPP+VPSYLKAAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCSCRCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA

XP_022986949.1 SWR1 complex subunit 6 [Cucurbita maxima]7.6e-8393.6Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+EL+ENIDDEDASLDDD+ AYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA
        ELLHEA+LESLPP+VPSY+KAAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCSCRCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA

XP_023512985.1 SWR1 complex subunit 6 isoform X1 [Cucurbita pepo subsp. pepo]4.5e-8394.19Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+EL+ENIDDEDASLDDD+ AYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA
        ELLHEA+LESLPP+VPSYLKAAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCSCRCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA

TrEMBL top hitse value%identityAlignment
A0A0A0KH15 HIT-type domain-containing protein1.3e-8093.6Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDD+TN FRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAG+E+VENIDDEDASLDDDD AYI KRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA
        ELLHEANLESLPP+VPSYLKAAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA

A0A1S3CKL9 SWR1 complex subunit 61.3e-8093.6Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDD+TN FRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGME+VENIDDEDASLDDDD AYI KRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA
        ELLHEANLESLPP+VPSY KAAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCS RCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA

A0A6J1D2Z0 SWR1 complex subunit 6 isoform X16.5e-88100Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA
        ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA

A0A6J1FTL5 SWR1 complex subunit 62.2e-8394.19Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+EL+ENIDDEDASLDDD+ AYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA
        ELLHEA+LESLPP+VPSYLKAAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCSCRCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA

A0A6J1JHH9 SWR1 complex subunit 63.7e-8393.6Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
        MDDDATNSFRRMSSRTRKVAPKMVAALASSDNR+QAALARLEALENDNAG+EL+ENIDDEDASLDDD+ AYIQKRQSKGTKRKTRQAKALEAKKAPKTFM
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFM

Query:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA
        ELLHEA+LESLPP+VPSY+KAAVGPPSS+SRRHFCTVCGFAA+YTCIRCG+RFCSCRCQNIHNDTRCLKFVA
Subjt:  ELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA

SwissProt top hitse value%identityAlignment
O43257 Zinc finger HIT domain-containing protein 19.6e-1235.8Show/hide
Query:  RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAK-KAPKTFMELLHEANL
        ++ S R++    + V   A+   R      +LEALENDN         DD  A L        Q      T +K ++ +    K +  K F  LL E NL
Subjt:  RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAK-KAPKTFMELLHEANL

Query:  ESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKF
               P+YL A  GPP S  +R FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Subjt:  ESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKF

Q24JY4 Zinc finger HIT domain-containing protein 19.6e-1235.8Show/hide
Query:  RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAK-KAPKTFMELLHEANL
        ++ S R++    + V   A+   R      +LEALENDN         DD  A L        Q      T +K ++ +    K +  K F  LL E NL
Subjt:  RRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAK-KAPKTFMELLHEANL

Query:  ESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKF
               P+YL A  GPP S  +R FC VCGF + YTC+ CG R+C+ RC   H +TRCLK+
Subjt:  ESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKF

Q54NW0 Zinc finger HIT domain-containing protein 1 homolog3.5e-1432.7Show/hide
Query:  SSRTRKVAPKMVAALASSDNRT---QAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQ-SKGTKRKTRQAKALEAKKAPKTFMELLHEANL
        SS+ +    K     +  D R    +   ARLE+L++DN    +    D+ED   +DD+   +     +K      R+ K  E K     F ++L ++ L
Subjt:  SSRTRKVAPKMVAALASSDNRT---QAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQ-SKGTKRKTRQAKALEAKKAPKTFMELLHEANL

Query:  ESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRC
        E+ P +VP+Y+ +    PS    RHFC++CG+   YTC +C  R+CS +C N HN+TRC
Subjt:  ESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRC

Q8R331 Zinc finger HIT domain-containing protein 18.7e-1340.15Show/hide
Query:  RLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAK-KAPKTFMELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVC
        +LEALENDN         DD  A L        Q      T +K ++ +    K +  K F  LL E NL +     P+YL A  GPP S  +R FC VC
Subjt:  RLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAK-KAPKTFMELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVC

Query:  GFAATYTCIRCGMRFCSCRCQNIHNDTRCLKF
        GF + YTC+ CG R+C+ RC   H +TRCLK+
Subjt:  GFAATYTCIRCGMRFCSCRCQNIHNDTRCLKF

Q9FHW2 SWR1 complex subunit 61.6e-6272.83Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLD-DDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTF
        M+++ +N  RR+S+RTRKVA KM AAL S+DNRTQAA+ARLEALENDN  +E+++  DDE+ASLD DDDL Y+QK+Q KG+KRKTRQAKALEA+KAPK+F
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLD-DDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTF

Query:  MELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA
        +ELL EANLESLP +VP+YLKAAVGPPSSSSRR+FC+VCG+ A Y C  CGMRFCS RCQNIH DTRC KFVA
Subjt:  MELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA

Arabidopsis top hitse value%identityAlignment
AT5G37055.1 HIT-type Zinc finger family protein1.1e-6372.83Show/hide
Query:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLD-DDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTF
        M+++ +N  RR+S+RTRKVA KM AAL S+DNRTQAA+ARLEALENDN  +E+++  DDE+ASLD DDDL Y+QK+Q KG+KRKTRQAKALEA+KAPK+F
Subjt:  MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLD-DDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTF

Query:  MELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA
        +ELL EANLESLP +VP+YLKAAVGPPSSSSRR+FC+VCG+ A Y C  CGMRFCS RCQNIH DTRC KFVA
Subjt:  MELLHEANLESLPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGACGACGCTACGAATTCATTTCGACGCATGTCCAGCCGCACTCGGAAGGTTGCTCCTAAGATGGTGGCTGCCCTAGCAAGCAGTGACAACCGCACTCAGGCAGC
TCTTGCTCGTCTCGAGGCATTGGAAAATGACAATGCGGGAATGGAATTGGTAGAAAATATTGACGACGAGGATGCCTCTCTCGATGATGACGATCTAGCATACATACAGA
AGCGGCAATCGAAGGGCACTAAGCGCAAAACTAGACAGGCAAAAGCACTTGAAGCTAAGAAGGCTCCTAAAACTTTCATGGAGCTTTTGCACGAGGCAAATTTGGAGTCT
CTGCCTCCTTATGTTCCATCATACTTAAAGGCAGCTGTTGGACCTCCAAGCTCGTCATCCCGCCGCCATTTTTGCACCGTCTGTGGATTTGCTGCTACATATACCTGCAT
AAGGTGTGGAATGCGCTTTTGTTCATGTCGTTGCCAGAATATACACAATGATACTCGTTGTTTGAAATTTGTTGCC
mRNA sequenceShow/hide mRNA sequence
ATGGATGACGACGCTACGAATTCATTTCGACGCATGTCCAGCCGCACTCGGAAGGTTGCTCCTAAGATGGTGGCTGCCCTAGCAAGCAGTGACAACCGCACTCAGGCAGC
TCTTGCTCGTCTCGAGGCATTGGAAAATGACAATGCGGGAATGGAATTGGTAGAAAATATTGACGACGAGGATGCCTCTCTCGATGATGACGATCTAGCATACATACAGA
AGCGGCAATCGAAGGGCACTAAGCGCAAAACTAGACAGGCAAAAGCACTTGAAGCTAAGAAGGCTCCTAAAACTTTCATGGAGCTTTTGCACGAGGCAAATTTGGAGTCT
CTGCCTCCTTATGTTCCATCATACTTAAAGGCAGCTGTTGGACCTCCAAGCTCGTCATCCCGCCGCCATTTTTGCACCGTCTGTGGATTTGCTGCTACATATACCTGCAT
AAGGTGTGGAATGCGCTTTTGTTCATGTCGTTGCCAGAATATACACAATGATACTCGTTGTTTGAAATTTGTTGCC
Protein sequenceShow/hide protein sequence
MDDDATNSFRRMSSRTRKVAPKMVAALASSDNRTQAALARLEALENDNAGMELVENIDDEDASLDDDDLAYIQKRQSKGTKRKTRQAKALEAKKAPKTFMELLHEANLES
LPPYVPSYLKAAVGPPSSSSRRHFCTVCGFAATYTCIRCGMRFCSCRCQNIHNDTRCLKFVA