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MS014194 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014194
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem II CP43 reaction center protein
Genome locationscaffold5:1322563..1322664
RNA-Seq ExpressionMS014194
SyntenyMS014194
Gene Ontology termsGO:0009772 - photosynthetic electron transport in photosystem II (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016168 - chlorophyll binding (molecular function)
GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000932 - Photosystem antenna protein-like
IPR036001 - Photosystem antenna protein-like superfamily
IPR044900 - Photosystem II CP43 reaction centre protein superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AEX01577.1 photosystem II CP43, partial [Hydrocharis morsus-ranae]2.6e-1194.12Show/hide
Query:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
        GEVIFGGET+RFWDLRAPWLEPL+GPNGLDLSRL
Subjt:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
ANH20866.1 photosystem II CP43 chlorophyll apoprotein [Arabidopsis halleri subsp. gemmifera]2.6e-1194.12Show/hide
Query:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
        GEVIFGGET+RFWDLRAPWLEPL+GPNGLDLSRL
Subjt:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
QUB01664.1 photosystem II CP43 chlorophyll apoprotein [Amischotolype hispida]2.6e-1194.12Show/hide
Query:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
        GEVIFGGET+RFWDLRAPWLEPL+GPNGLDLSRL
Subjt:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
QVD43796.1 photosystem II CP43 chlorophyll apoprotein [Primula obconica subsp. fujianensis]2.6e-1194.12Show/hide
Query:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
        GEVIFGGET+RFWDLRAPWLEPL+GPNGLDLSRL
Subjt:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
TQD83238.1 hypothetical protein C1H46_031201 [Malus baccata]1.2e-1197.06Show/hide
Query:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
        GEVIFGGETIRFWDLRAPWLEPL+GPNGLDLSRL
Subjt:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
TrEMBL top hitse value%identityAlignment
A0A175DA70 Photosystem II CP43 reaction center protein1.3e-1194.12Show/hide
Query:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
        GEVIFGGET+RFWDLRAPWLEPL+GPNGLDLSRL
Subjt:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
A0A287JPY4 Photosystem II D2 protein5.7e-1297.06Show/hide
Query:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
        GEVIFGGETIRFWDLRAPWLEPL+GPNGLDLSRL
Subjt:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
A0A2L0VCR7 Photosystem II CP43 reaction center protein1.3e-1194.12Show/hide
Query:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
        GEVIFGGET+RFWDLRAPWLEPL+GPNGLDLSRL
Subjt:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
A0A411D8D7 Photosystem II CP43 reaction center protein1.3e-1194.12Show/hide
Query:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
        GEVIFGGET+RFWDLRAPWLEPL+GPNGLDLSRL
Subjt:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
A0A540L9S5 Uncharacterized protein5.7e-1297.06Show/hide
Query:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
        GEVIFGGETIRFWDLRAPWLEPL+GPNGLDLSRL
Subjt:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
SwissProt top hitse value%identityAlignment
A1E9Z4 Photosystem II CP43 reaction center protein3.4e-1494.12Show/hide
Query:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
        GEVIFGGET+RFWDLRAPWLEPL+GPNGLDLSRL
Subjt:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
A4QJB1 Photosystem II CP43 reaction center protein3.4e-1494.12Show/hide
Query:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
        GEVIFGGET+RFWDLRAPWLEPL+GPNGLDLSRL
Subjt:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
A4QJJ5 Photosystem II CP43 reaction center protein3.4e-1494.12Show/hide
Query:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
        GEVIFGGET+RFWDLRAPWLEPL+GPNGLDLSRL
Subjt:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
A9LYI1 Photosystem II CP43 reaction center protein3.4e-1494.12Show/hide
Query:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
        GEVIFGGET+RFWDLRAPWLEPL+GPNGLDLSRL
Subjt:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
Q3V538 Photosystem II CP43 reaction center protein3.4e-1494.12Show/hide
Query:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
        GEVIFGGET+RFWDLRAPWLEPL+GPNGLDLSRL
Subjt:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
Arabidopsis top hitse value%identityAlignment
ATCG00280.1 photosystem II reaction center protein C2.5e-1594.12Show/hide
Query:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL
        GEVIFGGET+RFWDLRAPWLEPL+GPNGLDLSRL
Subjt:  GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGAGAAGTTATTTTTGGAGGAGAGACTATACGTTTTTGGGATCTGCGTGCTCCATGGTTAGAACCACTAAAGGGTCCTAATGGTTTGGACTTGAGTAGGCTG
mRNA sequenceShow/hide mRNA sequence
GGAGAAGTTATTTTTGGAGGAGAGACTATACGTTTTTGGGATCTGCGTGCTCCATGGTTAGAACCACTAAAGGGTCCTAATGGTTTGGACTTGAGTAGGCTG
Protein sequenceShow/hide protein sequence
GEVIFGGETIRFWDLRAPWLEPLKGPNGLDLSRL