; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS014203 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014203
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionElf4 domain-containing protein
Genome locationscaffold5:1373129..1373373
RNA-Seq ExpressionMS014203
SyntenyMS014203
Gene Ontology termsGO:0009649 - entrainment of circadian clock (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5751375.1 hypothetical protein HS088_TW02G00388 [Tripterygium wilfordii]1.8e-1363.75Show/hide
Query:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA
        LS++FRQVQTVLDHNR LIQQVN+NHQS I     KNV LIREINGNIS+VISIYS+LS +F   +Q       G  D A
Subjt:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA

KAG5253815.1 protein ELF [Salix suchowensis]3.0e-1371.64Show/hide
Query:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQ
        LS +F+QVQ+VLDHNR LIQQVN NH+S I    VKNVSLIREINGNIS+VISIYS+LS NF   +Q
Subjt:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQ

XP_023919389.1 protein EARLY FLOWERING 4-like [Quercus suber]1.8e-1360.98Show/hide
Query:  NMLSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA
        N L++ FRQVQTVLD NR LIQQVN+NHQS I    VKNV+LI+EINGNIS+V+S+YSNLSS+F     H  +  + G DK+
Subjt:  NMLSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA

XP_030932748.1 protein EARLY FLOWERING 4-like [Quercus lobata]4.6e-1460.98Show/hide
Query:  NMLSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA
        N L++ FRQVQTVLD NR LIQQVN+NHQS I    VKNV+LIREINGNIS+V+S+YSNLSS+F        +  + G DK+
Subjt:  NMLSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA

XP_038717251.1 uncharacterized protein LOC120010536 [Tripterygium wilfordii]1.8e-1363.75Show/hide
Query:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA
        LS++FRQVQTVLDHNR LIQQVN+NHQS I     KNV LIREINGNIS+VISIYS+LS +F   +Q       G  D A
Subjt:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA

TrEMBL top hitse value%identityAlignment
A0A3N7EBY2 Elf4 domain-containing protein1.9e-1365.79Show/hide
Query:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGG
        LS +F+QVQ+VLDHNR LIQQVN NHQS I    VKNVSLIREINGNIS+V+SIYS+LS NF   +Q       GG
Subjt:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGG

A0A444X287 Elf4 domain-containing protein1.9e-1357.32Show/hide
Query:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKAGN
        ++ +FRQVQ+VLD NR+LIQQVN+NHQS I    VKNVSLI+E+NGNIS+V+S+YS+L+SNF  A QH  S++   + +  N
Subjt:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKAGN

A0A444X2B5 Elf4 domain-containing protein1.9e-1357.32Show/hide
Query:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKAGN
        ++ +FRQVQ+VLD NR+LIQQVN+NHQS I    VKNVSLI+E+NGNIS+V+S+YS+L+SNF  A QH  S++   + +  N
Subjt:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKAGN

A0A7J7DYC8 Elf4 domain-containing protein8.5e-1463.75Show/hide
Query:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA
        LS++FRQVQTVLDHNR LIQQVN+NHQS I     KNV LIREINGNIS+VISIYS+LS +F   +Q       G  D A
Subjt:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA

A0A7N2MFC5 Elf4 domain-containing protein2.2e-1460.98Show/hide
Query:  NMLSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA
        N L++ FRQVQTVLD NR LIQQVN+NHQS I    VKNV+LIREINGNIS+V+S+YSNLSS+F        +  + G DK+
Subjt:  NMLSNTFRQVQTVLDHNRSLIQQVNQNHQSMI----VKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 43.5e-1261.29Show/hide
Query:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMIV----KNVSLIREINGNISRVISIYSNLSSNF
        L   FRQVQ+VLD NRSLIQQVN NHQS +     KNV+LI+E+NGNIS+V+++YS+L+++F
Subjt:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMIV----KNVSLIREINGNISRVISIYSNLSSNF

O80877 Protein ELF4-LIKE 14.2e-1061.29Show/hide
Query:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMIVKNVS----LIREINGNISRVISIYSNLSSNF
        LSN F++ Q  LD NR LIQ+VN+NH S I  NVS    LI EINGNIS+V+ IYS+LS NF
Subjt:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMIVKNVS----LIREINGNISRVISIYSNLSSNF

Q570U6 Protein ELF4-LIKE 46.7e-0841.56Show/hide
Query:  TFRQVQTVLDHNRSLIQQVNQNHQSM----IVKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA
        +F  VQ +LD NR LI ++NQNH+S     + +NV LI+E+N NI RV S+Y +LS +F  ++  S   ++ G  K+
Subjt:  TFRQVQTVLDHNRSLIQQVNQNHQSM----IVKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA

Q8S8F5 Protein ELF4-LIKE 31.2e-0947.89Show/hide
Query:  TFRQVQTVLDHNRSLIQQVNQNHQSMIV----KNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDA
        +F QVQ +LDHNR LI ++NQNH+S I     +NV LIRE+N N+ RV  +Y +LS+NF  +++ S   D+
Subjt:  TFRQVQTVLDHNRSLIQQVNQNHQSMIV----KNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDA

Q94BS8 Protein ELF4-LIKE 26.7e-0842.86Show/hide
Query:  TFRQVQTVLDHNRSLIQQVNQNHQSM----IVKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA
        +F QVQ +LD NR LI ++NQNH+S     + +NV LIRE+N NI  V S+Y +LS +F  ++  S   ++ G  K+
Subjt:  TFRQVQTVLDHNRSLIQQVNQNHQSM----IVKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 44.8e-0941.56Show/hide
Query:  TFRQVQTVLDHNRSLIQQVNQNHQSM----IVKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA
        +F  VQ +LD NR LI ++NQNH+S     + +NV LI+E+N NI RV S+Y +LS +F  ++  S   ++ G  K+
Subjt:  TFRQVQTVLDHNRSLIQQVNQNHQSM----IVKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA

AT1G72630.1 ELF4-like 24.8e-0942.86Show/hide
Query:  TFRQVQTVLDHNRSLIQQVNQNHQSM----IVKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA
        +F QVQ +LD NR LI ++NQNH+S     + +NV LIRE+N NI  V S+Y +LS +F  ++  S   ++ G  K+
Subjt:  TFRQVQTVLDHNRSLIQQVNQNHQSM----IVKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKA

AT2G06255.1 ELF4-like 38.7e-1147.89Show/hide
Query:  TFRQVQTVLDHNRSLIQQVNQNHQSMIV----KNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDA
        +F QVQ +LDHNR LI ++NQNH+S I     +NV LIRE+N N+ RV  +Y +LS+NF  +++ S   D+
Subjt:  TFRQVQTVLDHNRSLIQQVNQNHQSMIV----KNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDA

AT2G29950.1 ELF4-like 13.0e-1161.29Show/hide
Query:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMIVKNVS----LIREINGNISRVISIYSNLSSNF
        LSN F++ Q  LD NR LIQ+VN+NH S I  NVS    LI EINGNIS+V+ IYS+LS NF
Subjt:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMIVKNVS----LIREINGNISRVISIYSNLSSNF

AT2G40080.1 Protein of unknown function (DUF1313)2.5e-1361.29Show/hide
Query:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMIV----KNVSLIREINGNISRVISIYSNLSSNF
        L   FRQVQ+VLD NRSLIQQVN NHQS +     KNV+LI+E+NGNIS+V+++YS+L+++F
Subjt:  LSNTFRQVQTVLDHNRSLIQQVNQNHQSMIV----KNVSLIREINGNISRVISIYSNLSSNF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AATATGCTTAGCAACACCTTCCGTCAGGTACAAACCGTATTGGATCATAATCGTTCCTTAATCCAACAGGTGAACCAGAATCACCAGTCGATGATCGTCAAGAACGTTTC
GTTGATCCGTGAGATTAATGGTAATATCTCTCGCGTCATCTCGATTTACTCCAATTTGTCGTCCAATTTCTGCTACGCAATCCAACACAGTTGTAGTCGTGACGCTGGAG
GAATTGACAAGGCAGGGAACGCA
mRNA sequenceShow/hide mRNA sequence
AATATGCTTAGCAACACCTTCCGTCAGGTACAAACCGTATTGGATCATAATCGTTCCTTAATCCAACAGGTGAACCAGAATCACCAGTCGATGATCGTCAAGAACGTTTC
GTTGATCCGTGAGATTAATGGTAATATCTCTCGCGTCATCTCGATTTACTCCAATTTGTCGTCCAATTTCTGCTACGCAATCCAACACAGTTGTAGTCGTGACGCTGGAG
GAATTGACAAGGCAGGGAACGCA
Protein sequenceShow/hide protein sequence
NMLSNTFRQVQTVLDHNRSLIQQVNQNHQSMIVKNVSLIREINGNISRVISIYSNLSSNFCYAIQHSCSRDAGGIDKAGNA