; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS014210 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014210
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzinc finger CCCH domain-containing protein 25
Genome locationscaffold5:1423017..1425345
RNA-Seq ExpressionMS014210
SyntenyMS014210
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005686 - U2 snRNP (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003723 - RNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR000571 - Zinc finger, CCCH-type
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily
IPR036855 - Zinc finger, CCCH-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570659.1 Zinc finger CCCH domain-containing protein 42, partial [Cucurbita argyrosperma subsp. sororia]3.4e-14677.97Show/hide
Query:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
        MNPLTLVKRIQKINSQEASLGISE+ASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGE+VDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
Subjt:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA

Query:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDD-
        QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDA++KWGHDKFDD KDRDRE+RAKGRKNSDD 
Subjt:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDD-

Query:  ----KEIS--RRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNH-----------------------------
            +EIS   RQE+K KGWDD K+SELKLRE+HGRKDEKR+ RH+ D +R+ KS DD YKREEK+SRRNH                             
Subjt:  ----KEIS--RRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNH-----------------------------

Query:  ---------DEELPQHSRRDYNWREEDKSKRHGGEEYQPKSRE-DDDRRER----RHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERNEDRHR
                 D+ELP HSRRDYN REED+SKRHG EEYQ K RE DDDRRER    RHRSESHRREN DEKRD RSSHGRD   HSHRERNEDR R
Subjt:  ---------DEELPQHSRRDYNWREEDKSKRHGGEEYQPKSRE-DDDRRER----RHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERNEDRHR

KAG7010507.1 Zinc finger CCCH domain-containing protein 42, partial [Cucurbita argyrosperma subsp. argyrosperma]4.8e-14577.86Show/hide
Query:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
        MNPLTLVKRIQKINSQEASLGISE+ASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGE+VDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
Subjt:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA

Query:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDD-
        QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDA++KWGHDKFDD KDRDRE+RAKGRKNSDD 
Subjt:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDD-

Query:  ----KEIS--RRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNH-----------------------------
            +EIS   RQE+K KGWDD KESELK RE+HGRKDEKR+ RH+ D +R+ K  DD YKREEK+SRRNH                             
Subjt:  ----KEIS--RRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNH-----------------------------

Query:  ---------DEELPQHSRRDYNWREEDKSKRHGGEEYQPKSRED-DDRRER----RHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERNEDR
                 D+ELP HSRRDYN REED+SKRHG EEYQ K RED DDRRER    RHRSESHRREN DEKRD RSSHGRD   HSHRERNEDR
Subjt:  ---------DEELPQHSRRDYNWREEDKSKRHGGEEYQPKSRED-DDRRER----RHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERNEDR

XP_022148365.1 LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 25 [Momordica charantia]4.7e-15698.31Show/hide
Query:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
        MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
Subjt:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA

Query:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDDK
        QILGR+IRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWG  EDANAKWGHDKFDDPKD DREVRAKGRKNSDD+
Subjt:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDDK

Query:  EISRRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNHDEELPQHSRRDYNWREEDKSKRHGGEEYQPK
        EISRRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNHDEELPQHSRRDYNWREEDKSKRHGGEEYQPK
Subjt:  EISRRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNHDEELPQHSRRDYNWREEDKSKRHGGEEYQPK

XP_022944591.1 zinc finger CCCH domain-containing protein 25 [Cucurbita moschata]2.8e-14577.72Show/hide
Query:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
        MNPLTLVKRIQKINSQEASLGISE+ASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGE+VDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
Subjt:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA

Query:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDD-
        QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDA++KWGHDKFDD KDRDRE+RAKGRKNSDD 
Subjt:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDD-

Query:  ----KEIS--RRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNH-----------------------------
            +EIS   RQE+K KGWDD KESELK RE+HGRKDEKR+ RH+ D +R+ KS DD YKREEK+SRRNH                             
Subjt:  ----KEIS--RRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNH-----------------------------

Query:  ---------DEELPQHSRRDYNWREEDKSKRHGGEEYQPKSRED-DDRRER----RHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERNEDRHR
                 D+ELP HSRRDYN REED+SKRHG EEYQ K RED DDRRER    RHRSESHRREN DEKRD RSSHGRD   HSHRERNED  R
Subjt:  ---------DEELPQHSRRDYNWREEDKSKRHGGEEYQPKSRED-DDRRER----RHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERNEDRHR

XP_022986885.1 zinc finger CCCH domain-containing protein 25 [Cucurbita maxima]1.8e-14778.68Show/hide
Query:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
        MNPLTLVKRIQKINSQEASLGISE+ASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGE+VDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
Subjt:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA

Query:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDD-
        QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDA++KWGHDKFDD KDRDRE+RAKGRKNSDD 
Subjt:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDD-

Query:  ----KEIS--RRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNH-----------------------------
            +EIS   RQE+K KGWDD KESELK RE+HGRKDEKRL RH+ D++R+ KS DDHYKREEK+SRRNH                             
Subjt:  ----KEIS--RRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNH-----------------------------

Query:  --------DEELPQHSRRDYNWREEDKSKRHGGEEYQPKSRED-DDRRER----RHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERNEDRHR
                D+ELP HSRRDYN REEDKSKRHG EE+Q K RED DDRRER    RHRSESHRREN DEKRD RSS+GRD   HSHRERNEDRHR
Subjt:  --------DEELPQHSRRDYNWREEDKSKRHGGEEYQPKSRED-DDRRER----RHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERNEDRHR

TrEMBL top hitse value%identityAlignment
A0A0A0KZW7 Uncharacterized protein1.1e-13773.42Show/hide
Query:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
        MNPLTLVKRIQKINSQEA+LGISE+ASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGE+VDVNL+RDKGTGKSKG+AFVAYEDQRST LAVDNLNGA
Subjt:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA

Query:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSD--
        QILGRI+RVDHV+KYKKKEEEDEE EQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAA+TGWGAAEDA++KWGHDKFD  K+ D+E+ AKGRK SD  
Subjt:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSD--

Query:  -----DKEISRRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNHDE---------------------------
             +   S RQEN+ +GWDDSKESELK REDHG KDEKR RR+++D + DPKS DD YK EEK+S RNHD+                           
Subjt:  -----DKEISRRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNHDE---------------------------

Query:  ----------ELPQHSRRDYNWREEDK-SKRHGGEEYQPKSREDDDRRER----RHRSESHRRENQDEKRDFRSSH-GRDSSSHSHRERNEDRHR
                  ELPQHSRRDY  REED+ SKRHG +EY PK REDD RRER    RHRSES+RREN DEKRD+RSSH GRDSSSHSHRERNEDR R
Subjt:  ----------ELPQHSRRDYNWREEDK-SKRHGGEEYQPKSREDDDRRER----RHRSESHRRENQDEKRDFRSSH-GRDSSSHSHRERNEDRHR

A0A5D3CVY9 Zinc finger CCCH domain-containing protein 25-like isoform X13.6e-13874.06Show/hide
Query:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
        MNPLTLVKRIQKINSQEA+LGISE+ASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGE+VDVNL+RDKGTGKSKG+AFVAYEDQRST LAVDNLNGA
Subjt:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA

Query:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDD-
        QILGRIIRVDHV+KYKKKEEEDEE EQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDA++KWGHDKFD   + D+E+RAKGRKNSDD 
Subjt:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDD-

Query:  ------KEISRRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNH-----------------------------
                 S RQEN+ KGWDDSK SELK REDH R+DEKR RR+++D + DPK  DD YKREEK+S RNH                             
Subjt:  ------KEISRRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNH-----------------------------

Query:  ----------DEELPQHSRRDYNWREEDK-SKRHGGEEYQPKSREDDDRRER----RHRSESHRRENQDEKRDFRSSH-GRDSSSHSHRERNEDRHR
                  D ELPQHSRR+YN REED+ SKRHG EEYQPK  EDD RRER    RHRSESHRREN +EKRDFRSSH GRDSSSHSH ERNEDR R
Subjt:  ----------DEELPQHSRRDYNWREEDK-SKRHGGEEYQPKSREDDDRRER----RHRSESHRRENQDEKRDFRSSH-GRDSSSHSHRERNEDRHR

A0A6J1D2Q3 LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 252.3e-15698.31Show/hide
Query:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
        MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
Subjt:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA

Query:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDDK
        QILGR+IRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWG  EDANAKWGHDKFDDPKD DREVRAKGRKNSDD+
Subjt:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDDK

Query:  EISRRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNHDEELPQHSRRDYNWREEDKSKRHGGEEYQPK
        EISRRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNHDEELPQHSRRDYNWREEDKSKRHGGEEYQPK
Subjt:  EISRRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNHDEELPQHSRRDYNWREEDKSKRHGGEEYQPK

A0A6J1FUU2 zinc finger CCCH domain-containing protein 251.4e-14577.72Show/hide
Query:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
        MNPLTLVKRIQKINSQEASLGISE+ASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGE+VDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
Subjt:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA

Query:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDD-
        QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDA++KWGHDKFDD KDRDRE+RAKGRKNSDD 
Subjt:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDD-

Query:  ----KEIS--RRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNH-----------------------------
            +EIS   RQE+K KGWDD KESELK RE+HGRKDEKR+ RH+ D +R+ KS DD YKREEK+SRRNH                             
Subjt:  ----KEIS--RRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNH-----------------------------

Query:  ---------DEELPQHSRRDYNWREEDKSKRHGGEEYQPKSRED-DDRRER----RHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERNEDRHR
                 D+ELP HSRRDYN REED+SKRHG EEYQ K RED DDRRER    RHRSESHRREN DEKRD RSSHGRD   HSHRERNED  R
Subjt:  ---------DEELPQHSRRDYNWREEDKSKRHGGEEYQPKSRED-DDRRER----RHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERNEDRHR

A0A6J1JFA2 zinc finger CCCH domain-containing protein 258.6e-14878.68Show/hide
Query:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
        MNPLTLVKRIQKINSQEASLGISE+ASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGE+VDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
Subjt:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA

Query:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDD-
        QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDA++KWGHDKFDD KDRDRE+RAKGRKNSDD 
Subjt:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDD-

Query:  ----KEIS--RRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNH-----------------------------
            +EIS   RQE+K KGWDD KESELK RE+HGRKDEKRL RH+ D++R+ KS DDHYKREEK+SRRNH                             
Subjt:  ----KEIS--RRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNH-----------------------------

Query:  --------DEELPQHSRRDYNWREEDKSKRHGGEEYQPKSRED-DDRRER----RHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERNEDRHR
                D+ELP HSRRDYN REEDKSKRHG EE+Q K RED DDRRER    RHRSESHRREN DEKRD RSS+GRD   HSHRERNEDRHR
Subjt:  --------DEELPQHSRRDYNWREEDKSKRHGGEEYQPKSRED-DDRRER----RHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERNEDRHR

SwissProt top hitse value%identityAlignment
B0BN49 RNA-binding motif protein, X-linked 23.4e-3236.23Show/hide
Query:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
        MNPLT VK I ++N +E  LG++E  SWH++YKDSA++F+GG+PY+LTEGD++ VF+QYGE+V++NLVRDK TGKSKGF F+ YEDQRST+LAVDN NG 
Subjt:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA

Query:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDDK
        +I GR IRVDHV  Y +  +E E+ +   RE +            +G G K         ++    +ED +AK        PK   +E + K  K   ++
Subjt:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDDK

Query:  EISRRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNHDEELPQHSRRDYNWREEDKSKRHGGEEYQPKSREDD
         +     + S+     KE++ +  + H  K  +R ++ E  + +   S       + + S R   EE    ++++ +  E   S R  GEE   KSR+ D
Subjt:  EISRRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNHDEELPQHSRRDYNWREEDKSKRHGGEEYQPKSREDD

Query:  DRRERRHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERNEDRHR
          R     S  H   ++      RS     S   SHR +   +HR
Subjt:  DRRERRHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERNEDRHR

Q10B98 Zinc finger CCCH domain-containing protein 251.1e-7554.62Show/hide
Query:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
        MNPLT VKR Q IN +EA LGI ED SWHAK+KDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAF+AYEDQRSTILAVDNLNGA
Subjt:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA

Query:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREV-RAKGRKNSDD
        ++LGRI+RVDHV+KYKKKEEEDEE  QKKREARGVC AFQ+GEC RGA C++SHDEQR ANTGWG+ E++ A+W HD+  +P    ++   + G +   D
Subjt:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREV-RAKGRKNSDD

Query:  KEISRRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNHDEELPQHSRRDYNWREEDKSKRHGGEEYQPKSRED
        +    ++ENKS G                   E +  R E   DRD + R  H  R  K   R   +  P+ SR D         ++   + Y     + 
Subjt:  KEISRRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNHDEELPQHSRRDYNWREEDKSKRHGGEEYQPKSRED

Query:  DDRRERRHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERNEDRHR
         D +  R+RSE  + +  D+KR  R +   DSS H  R  NED  R
Subjt:  DDRRERRHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERNEDRHR

Q8R0F5 RNA-binding motif protein, X-linked 22.3e-3335.36Show/hide
Query:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
        MNPLT VK I ++N +E  LG++E  SWH++YK SA++FVGG+PY+LTEGD++ VF+QYGE+V++NLVRDK TGKSKGF F+ YEDQRST+LAVDN NG 
Subjt:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA

Query:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDDK
        +I GR IRVDHV+ Y +  +E E+ +   RE +            +G G K         +      EDA     H K    K + ++ + +G+  ++  
Subjt:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDDK

Query:  EISRRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNHDEELPQH-----SRRDYNWREEDKSKRHGGEEYQPK
          SR    K K   D + S     +   R  +   R  +      P  R  ++ R E    +   E+ P+H     SRR+   +  ++ +      +  +
Subjt:  EISRRQENKSKGWDDSKESELKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNHDEELPQH-----SRRDYNWREEDKSKRHGGEEYQPK

Query:  SREDDDRRERRHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERN
         R   D R  R RS S   +     + +R S  RDS   S R  +
Subjt:  SREDDDRRERRHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERN

Q9SD61 Zinc finger CCCH domain-containing protein 426.7e-7351.57Show/hide
Query:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
        MNPLT VK +QKIN++E+ LGIS++ASWHAKYK+SAYV+VGGIP+DLTEGDLLAVF+QYGE+VDVNL+RDKGTGKSKGFAF+AYEDQRSTILAVDNLNGA
Subjt:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA

Query:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPK------DRDREVRAKGR
         +LGR I+VDH   YKK EEEDEET ++ REARGVCRAFQRGECTRG  CKFSHDE+RAANTGWG  ED ++KW HDK  + +       R    R    
Subjt:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPK------DRDREVRAKGR

Query:  KNSDDKEISR-----RQENKSKGWD----------------------DSKESELKLREDHGRKDEKRLRRHEVD-DDRDPKSRDDHYKREEKKSRRNHDE
        K S D++ +       +E++S  WD                      D +E   + R D      +   R  VD +D  P+SRD +  +E+K+S R  + 
Subjt:  KNSDDKEISR-----RQENKSKGWD----------------------DSKESELKLREDHGRKDEKRLRRHEVD-DDRDPKSRDDHYKREEKKSRRNHDE

Query:  ELPQHSRRDYNWREEDKSKRHGGEEYQPKSREDDDRRERRHRSESHRRENQ
           +H+      RE+  S+    E+ + +SR D + RE + R +S RRE++
Subjt:  ELPQHSRRDYNWREEDKSKRHGGEEYQPKSREDDDRRERRHRSESHRRENQ

Q9Y388 RNA-binding motif protein, X-linked 21.4e-3337.82Show/hide
Query:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
        MNPLT VK I ++N +E  LG+++  SWH++YKDSA++F+GG+PY+LTEGD++ VF+QYGE+V++NLVRDK TGKSKGF F+ YEDQRSTILAVDN NG 
Subjt:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA

Query:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDDK
        +I GR IRVDHV+ Y+  ++ +E  +        V R  Q     +G G +              ++ED      H      KD+  + + K  K   D+
Subjt:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDDK

Query:  EISRRQENKSKGWDDS-KESELKLREDHGRKDEKRLRRHEV-DDDRDPKSRD------DHYKREEKKSRRNHDEELPQHSRRDYNWREEDKSKRHGGEEY
        E+   Q + S     + KE +    + H  K+ +R ++ E  +  + PKSR       +  +RE KK +  H+ +    SRR+   REE    R  G   
Subjt:  EISRRQENKSKGWDDS-KESELKLREDHGRKDEKRLRRHEV-DDDRDPKSRD------DHYKREEKKSRRNHDEELPQHSRRDYNWREEDKSKRHGGEEY

Query:  QPKSREDDDRRE-RRHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERN
           S   + R E R +RS S  R+     +  R S  R+SS+ S R R+
Subjt:  QPKSREDDDRRE-RRHRSESHRRENQDEKRDFRSSHGRDSSSHSHRERN

Arabidopsis top hitse value%identityAlignment
AT1G71800.1 cleavage stimulating factor 646.8e-1239.18Show/hide
Query:  VFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEEEDEETEQKKREARG
        VFVG IPYD TE  L  +  + G VV   LV D+ TGK KG+ F  Y+D+ + + A  NL   +I GR +RVD         E D+ T++ + +++G
Subjt:  VFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVDHVTKYKKKEEEDEETEQKKREARG

AT1G74230.1 glycine-rich RNA-binding protein 51.2e-1133.93Show/hide
Query:  LTLVKRIQKINSQEAS-LGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQI
        +  + ++ ++ SQ +S +  S       +   S+ +FVGGI Y   E  L   F++YGEVVD  ++ D+ TG+S+GFAFV +        A+  L+G  +
Subjt:  LTLVKRIQKINSQEAS-LGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQI

Query:  LGRIIRVDHVTK
         GR IRV++ T+
Subjt:  LGRIIRVDHVTK

AT3G47120.1 RNA recognition motif (RRM)-containing protein4.8e-7451.57Show/hide
Query:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA
        MNPLT VK +QKIN++E+ LGIS++ASWHAKYK+SAYV+VGGIP+DLTEGDLLAVF+QYGE+VDVNL+RDKGTGKSKGFAF+AYEDQRSTILAVDNLNGA
Subjt:  MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGA

Query:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPK------DRDREVRAKGR
         +LGR I+VDH   YKK EEEDEET ++ REARGVCRAFQRGECTRG  CKFSHDE+RAANTGWG  ED ++KW HDK  + +       R    R    
Subjt:  QILGRIIRVDHVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPK------DRDREVRAKGR

Query:  KNSDDKEISR-----RQENKSKGWD----------------------DSKESELKLREDHGRKDEKRLRRHEVD-DDRDPKSRDDHYKREEKKSRRNHDE
        K S D++ +       +E++S  WD                      D +E   + R D      +   R  VD +D  P+SRD +  +E+K+S R  + 
Subjt:  KNSDDKEISR-----RQENKSKGWD----------------------DSKESELKLREDHGRKDEKRLRRHEVD-DDRDPKSRDDHYKREEKKSRRNHDE

Query:  ELPQHSRRDYNWREEDKSKRHGGEEYQPKSREDDDRRERRHRSESHRRENQ
           +H+      RE+  S+    E+ + +SR D + RE + R +S RRE++
Subjt:  ELPQHSRRDYNWREEDKSKRHGGEEYQPKSREDDDRRERRHRSESHRRENQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCTCTGACCCTAGTGAAGCGCATCCAGAAAATCAATTCTCAGGAGGCATCGCTCGGGATTTCCGAAGATGCTTCTTGGCACGCCAAATACAAAGATTCCGCCTA
CGTTTTCGTTGGAGGCATTCCTTACGATCTCACCGAGGGTGATCTCCTCGCCGTTTTCGCACAGTATGGAGAGGTTGTCGATGTCAATCTTGTCAGAGACAAGGGTACAG
GAAAATCAAAAGGCTTTGCTTTTGTTGCATATGAAGACCAGAGAAGTACAATCCTTGCTGTAGATAATTTGAATGGTGCACAGATTCTAGGTCGAATCATTAGGGTTGAT
CATGTTACTAAATATAAGAAGAAGGAAGAAGAAGACGAAGAGACAGAACAAAAAAAGAGAGAAGCTCGGGGTGTTTGTCGTGCATTTCAAAGAGGTGAATGTACCCGTGG
AGCTGGATGCAAATTCTCTCATGATGAGCAGAGAGCTGCAAACACAGGCTGGGGGGCGGCGGAAGACGCAAATGCAAAGTGGGGACACGACAAGTTTGATGACCCAAAAG
ATCGTGATAGAGAAGTGCGAGCTAAAGGAAGGAAAAATAGCGATGATAAGGAAATTAGTAGGAGGCAGGAAAATAAATCAAAAGGCTGGGATGATAGTAAAGAATCAGAA
CTCAAGTTGAGAGAGGATCATGGCCGTAAAGATGAGAAGAGATTGAGAAGACATGAGGTTGATGATGACCGTGACCCGAAGTCAAGAGATGATCATTATAAGAGAGAAGA
AAAGAAATCTAGAAGGAACCATGATGAGGAACTCCCACAACATTCAAGAAGAGATTACAATTGGAGGGAAGAAGACAAGTCGAAAAGGCATGGTGGTGAAGAGTATCAAC
CAAAGTCGAGGGAAGACGACGATAGAAGGGAAAGAAGACATCGCTCAGAATCACACAGGAGGGAAAATCAAGATGAGAAGAGAGATTTTCGATCTTCTCATGGCAGAGAT
TCTTCATCCCATTCTCATAGAGAAAGAAATGAAGATCGTCATAGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCCTCTGACCCTAGTGAAGCGCATCCAGAAAATCAATTCTCAGGAGGCATCGCTCGGGATTTCCGAAGATGCTTCTTGGCACGCCAAATACAAAGATTCCGCCTA
CGTTTTCGTTGGAGGCATTCCTTACGATCTCACCGAGGGTGATCTCCTCGCCGTTTTCGCACAGTATGGAGAGGTTGTCGATGTCAATCTTGTCAGAGACAAGGGTACAG
GAAAATCAAAAGGCTTTGCTTTTGTTGCATATGAAGACCAGAGAAGTACAATCCTTGCTGTAGATAATTTGAATGGTGCACAGATTCTAGGTCGAATCATTAGGGTTGAT
CATGTTACTAAATATAAGAAGAAGGAAGAAGAAGACGAAGAGACAGAACAAAAAAAGAGAGAAGCTCGGGGTGTTTGTCGTGCATTTCAAAGAGGTGAATGTACCCGTGG
AGCTGGATGCAAATTCTCTCATGATGAGCAGAGAGCTGCAAACACAGGCTGGGGGGCGGCGGAAGACGCAAATGCAAAGTGGGGACACGACAAGTTTGATGACCCAAAAG
ATCGTGATAGAGAAGTGCGAGCTAAAGGAAGGAAAAATAGCGATGATAAGGAAATTAGTAGGAGGCAGGAAAATAAATCAAAAGGCTGGGATGATAGTAAAGAATCAGAA
CTCAAGTTGAGAGAGGATCATGGCCGTAAAGATGAGAAGAGATTGAGAAGACATGAGGTTGATGATGACCGTGACCCGAAGTCAAGAGATGATCATTATAAGAGAGAAGA
AAAGAAATCTAGAAGGAACCATGATGAGGAACTCCCACAACATTCAAGAAGAGATTACAATTGGAGGGAAGAAGACAAGTCGAAAAGGCATGGTGGTGAAGAGTATCAAC
CAAAGTCGAGGGAAGACGACGATAGAAGGGAAAGAAGACATCGCTCAGAATCACACAGGAGGGAAAATCAAGATGAGAAGAGAGATTTTCGATCTTCTCATGGCAGAGAT
TCTTCATCCCATTCTCATAGAGAAAGAAATGAAGATCGTCATAGA
Protein sequenceShow/hide protein sequence
MNPLTLVKRIQKINSQEASLGISEDASWHAKYKDSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFVAYEDQRSTILAVDNLNGAQILGRIIRVD
HVTKYKKKEEEDEETEQKKREARGVCRAFQRGECTRGAGCKFSHDEQRAANTGWGAAEDANAKWGHDKFDDPKDRDREVRAKGRKNSDDKEISRRQENKSKGWDDSKESE
LKLREDHGRKDEKRLRRHEVDDDRDPKSRDDHYKREEKKSRRNHDEELPQHSRRDYNWREEDKSKRHGGEEYQPKSREDDDRRERRHRSESHRRENQDEKRDFRSSHGRD
SSSHSHRERNEDRHR