; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS014233 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014233
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-CH-type domain-containing protein
Genome locationscaffold5:1546918..1548349
RNA-Seq ExpressionMS014233
SyntenyMS014233
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR032053 - Mitochondrial 28S ribosomal protein S34


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143137.1 uncharacterized protein LOC101207989 [Cucumis sativus]1.7e-5777.92Show/hide
Query:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG
        M+VANR AI+RALDFS+LSS+F+RTFS+SSPSTSSSNPNAS  SS  KRRKKKKNLFEVVQFLP WGVGYHVAK+HWDEISYQITKINLYK+G HGKAWG
Subjt:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG

Query:  IAHKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTTKSIESNPSAEVQTS
        IAHK+G PI EAPKKISGVHKRCW+YIA L +         S ES  SAEVQTS
Subjt:  IAHKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTTKSIESNPSAEVQTS

XP_022148301.1 uncharacterized protein LOC111016988 [Momordica charantia]1.4e-78100Show/hide
Query:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG
        MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG
Subjt:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG

Query:  IAHKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTTKSIESNPSAEVQTS
        IAHKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTTKSIESNPSAEVQTS
Subjt:  IAHKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTTKSIESNPSAEVQTS

XP_023007567.1 uncharacterized protein LOC111500023 [Cucurbita maxima]5.3e-5978.85Show/hide
Query:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG
        M+VANR  I+RALDFS+L+S+FIR FSTS+ STSSS+P+ASAA+S  KRRKKKKNLFEV+QFLP WGVGYHVAKAHWDEISYQITKINLYKNG HGKAWG
Subjt:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG

Query:  IAHKDGMPIAEAPKKISGVHKRCWRYIARLS-NHESIPTTTKSI-ESNPSAEVQTS
        IAHK+G PIAEAPKKISGVHKRCW+YI  LS + E+ PTT  ++ ESNPSAEVQTS
Subjt:  IAHKDGMPIAEAPKKISGVHKRCWRYIARLS-NHESIPTTTKSI-ESNPSAEVQTS

XP_023532313.1 uncharacterized protein LOC111794505 [Cucurbita pepo subsp. pepo]1.7e-5776.92Show/hide
Query:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG
        M+VANR  I+RALDFS+L+S+FIR FSTS+ STSSS+P+ASAA+S  KRRKKKKNLFEV+QFLP WGVGYHVAK HWDEISYQITKINLYKNG HGKAWG
Subjt:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG

Query:  IAHKDGMPIAEAPKKISGVHKRCWRYIARL-SNHESIPTTTKSI-ESNPSAEVQTS
        IAHK+G PIAEAPKKISGVHKRCW+YI  L  + E+ PTT  ++ ESNPSAE QTS
Subjt:  IAHKDGMPIAEAPKKISGVHKRCWRYIARL-SNHESIPTTTKSI-ESNPSAEVQTS

XP_038900676.1 uncharacterized protein LOC120087826 [Benincasa hispida]1.5e-6184.21Show/hide
Query:  VANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWGIA
        VANR AI+RALDFS+LSSTFIRTFSTSSPSTSSSNPNAS AS+  KRRKKKKNLFEVVQFLP WGVGYHVAKAHWDEISYQITKINLYKNG HGKAWGIA
Subjt:  VANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWGIA

Query:  HKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTTKSIESNPSAEVQTS
        HKDG PIAEAPKKISGVHKRCW+YIA L          +S ESNPSAEVQTS
Subjt:  HKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTTKSIESNPSAEVQTS

TrEMBL top hitse value%identityAlignment
A0A0A0KH76 Uncharacterized protein8.3e-5877.92Show/hide
Query:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG
        M+VANR AI+RALDFS+LSS+F+RTFS+SSPSTSSSNPNAS  SS  KRRKKKKNLFEVVQFLP WGVGYHVAK+HWDEISYQITKINLYK+G HGKAWG
Subjt:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG

Query:  IAHKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTTKSIESNPSAEVQTS
        IAHK+G PI EAPKKISGVHKRCW+YIA L +         S ES  SAEVQTS
Subjt:  IAHKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTTKSIESNPSAEVQTS

A0A5A7V0Y6 Uncharacterized protein1.1e-5777.27Show/hide
Query:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG
        M+VANR AI+RALDFS+LSS+FIRTF++SSPSTSSSNPNAS +SS  KRRKKKKNLFEV+QFLP WGVGYHVAK+HWDEISYQITKINLYK+G HGKAWG
Subjt:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG

Query:  IAHKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTTKSIESNPSAEVQTS
        IAHK+GMPI EAPKKISGVHKRCW+YIA L          +  ES  SAEVQTS
Subjt:  IAHKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTTKSIESNPSAEVQTS

A0A6J1D4Z3 uncharacterized protein LOC1110169886.5e-79100Show/hide
Query:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG
        MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG
Subjt:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG

Query:  IAHKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTTKSIESNPSAEVQTS
        IAHKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTTKSIESNPSAEVQTS
Subjt:  IAHKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTTKSIESNPSAEVQTS

A0A6J1G714 uncharacterized protein LOC1114514481.1e-5776.92Show/hide
Query:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG
        M+VANR  I+RALDFS+L+S+FIR FSTS+ STSSS+P+ASAA+S  KRRKKKKNLFEV+QFLP WGVGYHVAK HWDEISYQITKINLYKNG HGKAWG
Subjt:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG

Query:  IAHKDGMPIAEAPKKISGVHKRCWRYIARLSNH-ESIPTTTKSI-ESNPSAEVQTS
        IAHK+G PIAEAPKKISGVHKRCW+YI  L    E+ PTT  ++ ESNPSAEVQ+S
Subjt:  IAHKDGMPIAEAPKKISGVHKRCWRYIARLSNH-ESIPTTTKSI-ESNPSAEVQTS

A0A6J1KZ28 uncharacterized protein LOC1115000232.6e-5978.85Show/hide
Query:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG
        M+VANR  I+RALDFS+L+S+FIR FSTS+ STSSS+P+ASAA+S  KRRKKKKNLFEV+QFLP WGVGYHVAKAHWDEISYQITKINLYKNG HGKAWG
Subjt:  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWG

Query:  IAHKDGMPIAEAPKKISGVHKRCWRYIARLS-NHESIPTTTKSI-ESNPSAEVQTS
        IAHK+G PIAEAPKKISGVHKRCW+YI  LS + E+ PTT  ++ ESNPSAEVQTS
Subjt:  IAHKDGMPIAEAPKKISGVHKRCWRYIARLS-NHESIPTTTKSI-ESNPSAEVQTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G52370.1 unknown protein8.6e-3957.34Show/hide
Query:  MSVANRA-AITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAW
        M++ NRA + T  +   +LS   +R FS    + +S NP   ++ SS  +R+KKKNL EV QFLP WG+GYH+AKAHW+ ISY+ITKINLYK+G HGKAW
Subjt:  MSVANRA-AITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAW

Query:  GIAHKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTTKS
        GI HKDG+  AEAPKKISGVHKRCW+YI  LS  ++ P TT +
Subjt:  GIAHKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTTKS

AT5G58990.1 unknown protein6.5e-3958.45Show/hide
Query:  MSVANRA-AITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIK-RRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKA
        M++ NRA + T  +    LS + +R FS ++PS +S+  + + +S S K +R+KKKNL EV QFLP WG+GYH+AKAHW+ ISY+ITKINLYK+G HGKA
Subjt:  MSVANRA-AITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIK-RRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKA

Query:  WGIAHKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTT
        WGI HKDG+  AEAPKKISGVHKRCW+YI  LS  ++ P TT
Subjt:  WGIAHKDGMPIAEAPKKISGVHKRCWRYIARLSNHESIPTTT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ACGCCGATGTCTGTCGCGAACAGAGCTGCGATCACCCGAGCCCTAGATTTCTCCAAGTTATCTTCTACCTTCATCAGAACCTTCAGCACTTCTTCGCCGTCAACCTCTTC
CTCGAACCCTAATGCCTCGGCCGCTTCCAGTTCAATCAAGCGGAGGAAGAAGAAGAAGAACCTGTTCGAAGTTGTTCAGTTTTTGCCTAAATGGGGAGTAGGATACCATG
TGGCCAAGGCTCACTGGGATGAGATATCCTACCAGATCACCAAAATCAATCTCTACAAGAATGGCAATCATGGCAAGGCATGGGGTATCGCTCACAAAGATGGCATGCCC
ATTGCAGAAGCTCCAAAGAAAATCAGCGGAGTTCACAAGCGCTGTTGGAGGTATATTGCAAGGTTGTCAAATCATGAGAGTATACCGACCACGACGAAATCAATAGAAAG
CAACCCATCAGCCGAAGTTCAAACTTCA
mRNA sequenceShow/hide mRNA sequence
ACGCCGATGTCTGTCGCGAACAGAGCTGCGATCACCCGAGCCCTAGATTTCTCCAAGTTATCTTCTACCTTCATCAGAACCTTCAGCACTTCTTCGCCGTCAACCTCTTC
CTCGAACCCTAATGCCTCGGCCGCTTCCAGTTCAATCAAGCGGAGGAAGAAGAAGAAGAACCTGTTCGAAGTTGTTCAGTTTTTGCCTAAATGGGGAGTAGGATACCATG
TGGCCAAGGCTCACTGGGATGAGATATCCTACCAGATCACCAAAATCAATCTCTACAAGAATGGCAATCATGGCAAGGCATGGGGTATCGCTCACAAAGATGGCATGCCC
ATTGCAGAAGCTCCAAAGAAAATCAGCGGAGTTCACAAGCGCTGTTGGAGGTATATTGCAAGGTTGTCAAATCATGAGAGTATACCGACCACGACGAAATCAATAGAAAG
CAACCCATCAGCCGAAGTTCAAACTTCA
Protein sequenceShow/hide protein sequence
TPMSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVVQFLPKWGVGYHVAKAHWDEISYQITKINLYKNGNHGKAWGIAHKDGMP
IAEAPKKISGVHKRCWRYIARLSNHESIPTTTKSIESNPSAEVQTS