; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS014253 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014253
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionscarecrow-like transcription factor 11 (SCL11)
Genome locationscaffold5:1665193..1666639
RNA-Seq ExpressionMS014253
SyntenyMS014253
Gene Ontology termsGO:0000460 - maturation of 5.8S rRNA (biological process)
InterPro domainsIPR019324 - M-phase phosphoprotein 6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570693.1 hypothetical protein SDJN03_29608, partial [Cucurbita argyrosperma subsp. sororia]3.9e-6680.23Show/hide
Query:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC
        MQRA QREEQP KEEEVKPDE+FFPSS+II+KCVVLVEGDPHPGA KGRMSFQSFNPSID+LNEEVASLGQ E+P SSSGN SGNLSSR+NGSSQNEA C
Subjt:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC

Query:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG
        SNI E + EAN DLKRKQSEVV   DG  +H TKF +S RDNQQ SF++GK   KKPKG KLDWNVLRPSKTPNKSG
Subjt:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG

XP_022148303.1 uncharacterized protein LOC111016990 [Momordica charantia]6.6e-9099.44Show/hide
Query:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC
        MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGN SGNLSSRENGSSQNEAVC
Subjt:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC

Query:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG
        SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG
Subjt:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG

XP_022943952.1 uncharacterized protein LOC111448524 isoform X2 [Cucurbita moschata]2.5e-6578.53Show/hide
Query:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC
        MQRA QRE+QP +EEEVKPDE+FFPSS+II+KCVVLVEGDPHPGA KGRMSFQSFNPSID+LNEE+ASLGQ E+P SSSGN SGNLSSR+NGSSQNEA C
Subjt:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC

Query:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG
        SNI E + EAN DLKRKQSEVV   DG  +H TKF +S RDNQQ SF++GK   KKPKG KLDWNVLRPSKTPNKSG
Subjt:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG

XP_023512013.1 uncharacterized protein LOC111776852 isoform X2 [Cucurbita pepo subsp. pepo]4.8e-6478.53Show/hide
Query:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC
        MQRA QREEQP KEEEVK DE+FFPSS+II+KCVVLVEG PHPGA KGRMSFQSFNPSID+LNEEVASLGQ E+P SSSGN SGNLSSR+NGSSQNE +C
Subjt:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC

Query:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG
        SNI E + EAN DLKRKQSEVV   DG  +H TKF +S RDNQQ SF++GK   KKPKG KLDWNVLRPSKTPNKSG
Subjt:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG

XP_023532308.1 uncharacterized protein LOC111794500 isoform X1 [Cucurbita pepo subsp. pepo]4.8e-6477.97Show/hide
Query:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC
        MQRAAQ+EEQP KEEEVKP+E+ FPSS+II+KCVVLVEGDPHPGAL+GR+SFQSFNPSIDKLNEEVASLGQ+E P SSSGN S N+SSRENGSS+NEAV 
Subjt:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC

Query:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG
        SN  E + E NGDLKRKQSEVV E     +H TKF KS RDNQQ SFNNGK  FKKPKG  LDWNVLRPSKTPNK G
Subjt:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG

TrEMBL top hitse value%identityAlignment
A0A6J1D3R3 uncharacterized protein LOC1110169903.2e-9099.44Show/hide
Query:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC
        MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGN SGNLSSRENGSSQNEAVC
Subjt:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC

Query:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG
        SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG
Subjt:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG

A0A6J1FT40 uncharacterized protein LOC111448524 isoform X11.5e-6375.54Show/hide
Query:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSS-------RENGS
        MQRA QRE+QP +EEEVKPDE+FFPSS+II+KCVVLVEGDPHPGA KGRMSFQSFNPSID+LNEE+ASLGQ E+P SSSGN SGNLSS       R+NGS
Subjt:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSS-------RENGS

Query:  SQNEAVCSNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG
        SQNEA CSNI E + EAN DLKRKQSEVV   DG  +H TKF +S RDNQQ SF++GK   KKPKG KLDWNVLRPSKTPNKSG
Subjt:  SQNEAVCSNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG

A0A6J1FUG1 uncharacterized protein LOC111448524 isoform X21.2e-6578.53Show/hide
Query:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC
        MQRA QRE+QP +EEEVKPDE+FFPSS+II+KCVVLVEGDPHPGA KGRMSFQSFNPSID+LNEE+ASLGQ E+P SSSGN SGNLSSR+NGSSQNEA C
Subjt:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC

Query:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG
        SNI E + EAN DLKRKQSEVV   DG  +H TKF +S RDNQQ SF++GK   KKPKG KLDWNVLRPSKTPNKSG
Subjt:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG

A0A6J1G7T2 uncharacterized protein LOC1114516578.8e-6477.4Show/hide
Query:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC
        MQRAAQ+EEQP KEEEVKP+E+ FPSS+II+KCVVLVEGDPHPGAL+GR+SFQSFNPSIDKLNEEVASLGQ+E P  SSGN S N+SSRENGSS+NEAV 
Subjt:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC

Query:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG
        SN  E + E NGDLKRKQSEVV E     +H TKF KS RDNQQ SFNNGK  FKKPKG  LDWNVLRPSKTPNK G
Subjt:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG

A0A6J1L4S0 uncharacterized protein LOC1114998873.4e-6377.4Show/hide
Query:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC
        MQRAAQ+EEQP KEEEVKP+E+ FPSS+II+KCVVLVEGDPHPGAL+GR+SFQSFNPSIDKLNEEVASLGQ+E   SSSGN S N+SSRENGSS+NEAV 
Subjt:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC

Query:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG
        SN  E + E NGDLKRKQSEVV E     +H TKF KS RDNQQ SFNNGK  FKKPKG  LDWNVLRPSKTPNK G
Subjt:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G59460.1 scarecrow-like transcription factor 11 (SCL11)3.0e-2448.3Show/hide
Query:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC
        MQR++ + E+   +EE +P+ SF    ++ KKCVV+ + DP PGAL GRMSFQSFNPSI+KL+EE  + G    P+SSS N  G  S  E  SS+ E   
Subjt:  MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVC

Query:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGK-RLFKKPKGGKLDWNVLRPSKTPNK
           GE D    GDLKRKQSEVV E       Q +  KS R   +PS +N K   FKKPK  K+DW+VLRP K   K
Subjt:  SNIGENDYEANGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGK-RLFKKPKGGKLDWNVLRPSKTPNK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGGGCGGCTCAGAGAGAGGAGCAACCTAACAAAGAAGAAGAAGTAAAACCTGACGAGAGTTTCTTTCCTTCGAGTTCTATAATCAAAAAGTGTGTGGTTTTAGT
TGAAGGAGATCCTCATCCAGGGGCTCTTAAAGGTCGAATGTCTTTTCAAAGCTTTAATCCTTCTATTGATAAACTCAATGAAGAAGTAGCTAGCTTAGGTCAGCAAGAAG
TTCCCGCCTCTTCATCTGGAAATCGCAGTGGAAACCTTTCATCAAGAGAAAATGGTTCTTCACAAAATGAAGCAGTGTGCTCAAACATTGGTGAAAATGATTACGAGGCT
AATGGGGACCTTAAAAGGAAACAATCTGAAGTAGTGCCTGAACTTGATGGACAGCAACAGCATCAAACTAAATTTCAAAAAAGTGTACGGGACAATCAGCAGCCATCATT
TAATAACGGTAAACGATTATTCAAGAAACCAAAGGGTGGAAAGTTGGACTGGAATGTTCTTAGACCCTCTAAGACTCCAAATAAGAGCGGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGGGCGGCTCAGAGAGAGGAGCAACCTAACAAAGAAGAAGAAGTAAAACCTGACGAGAGTTTCTTTCCTTCGAGTTCTATAATCAAAAAGTGTGTGGTTTTAGT
TGAAGGAGATCCTCATCCAGGGGCTCTTAAAGGTCGAATGTCTTTTCAAAGCTTTAATCCTTCTATTGATAAACTCAATGAAGAAGTAGCTAGCTTAGGTCAGCAAGAAG
TTCCCGCCTCTTCATCTGGAAATCGCAGTGGAAACCTTTCATCAAGAGAAAATGGTTCTTCACAAAATGAAGCAGTGTGCTCAAACATTGGTGAAAATGATTACGAGGCT
AATGGGGACCTTAAAAGGAAACAATCTGAAGTAGTGCCTGAACTTGATGGACAGCAACAGCATCAAACTAAATTTCAAAAAAGTGTACGGGACAATCAGCAGCCATCATT
TAATAACGGTAAACGATTATTCAAGAAACCAAAGGGTGGAAAGTTGGACTGGAATGTTCTTAGACCCTCTAAGACTCCAAATAAGAGCGGA
Protein sequenceShow/hide protein sequence
MQRAAQREEQPNKEEEVKPDESFFPSSSIIKKCVVLVEGDPHPGALKGRMSFQSFNPSIDKLNEEVASLGQQEVPASSSGNRSGNLSSRENGSSQNEAVCSNIGENDYEA
NGDLKRKQSEVVPELDGQQQHQTKFQKSVRDNQQPSFNNGKRLFKKPKGGKLDWNVLRPSKTPNKSG