CuGenDBv2

Gene ID	MS014321
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	F-box family protein
Genome location	scaffold1971:175325..175774
RNA-Seq Expression	MS014321
Synteny	MS014321
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598351.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]

1.0e-54

77.21

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Query:  KKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPI
        KK+K    E +      +  ANLDDNLLFEV KHVDARTLATAAGVSKQWYKTA DE LWEL+CT+HWAN+GC NQQLRSVVLALGGFRRLHSLYPF PI
Subjt:  KKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPI

Query:  IGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTPT
        IGS  C  WG+DE+HLSLSLLSIRYYEKMKFKN PT
Subjt:  IGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTPT

XP_004143017.1 F-box protein GID2 [Cucumis sativus]

3.6e-52

76.98

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Query:  KKLKWWRSESEDDAS--QVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFA
        KK K   ++ E D S  Q +  ANLDDNLLFEV KHVDARTLAT AGVSKQW+KTA DERLWEL+CT+HW NLGC NQQLRSVVLALGGFRRLHSLYPF 
Subjt:  KKLKWWRSESEDDAS--QVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFA

Query:  PIIGSTPCNR-WGRDEVHLSLSLLSIRYYEKMKFKNTPT
        P+IG   CN  WG+DEVHLSLSLLSIRYYEKMKFKN PT
Subjt:  PIIGSTPCNR-WGRDEVHLSLSLLSIRYYEKMKFKNTPT

XP_022962352.1 F-box protein GID2-like [Cucurbita moschata]

2.5e-53

75.74

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Query:  KKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPI
        KK+K    E +      +  ANLDDNLLFEV KHVDARTLATAAGVSKQW KTA DE LWEL+CT+HWAN+GC NQQLRSVVLALGGFRRLHSLYPF PI
Subjt:  KKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPI

Query:  IGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTPT
        +GS  C  WG+DE+HLSLSLLSIRYYEKMKFKN PT
Subjt:  IGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTPT

XP_022996700.1 F-box protein GID2-like [Cucurbita maxima]

2.5e-53

75.74

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Query:  KKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPI
        KK+K    E +      +  ANLDDNLLFEV KHVDARTLATA+GVSKQWYKTA DE LWEL+CT+HWAN+GC N QLRSVVLALGGFRRLHSLYPF PI
Subjt:  KKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPI

Query:  IGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTPT
        IGS  C  WG+ EVHLSLSLLSIRYYEKMKFKN PT
Subjt:  IGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTPT

XP_023522812.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo]

3.8e-54

77.37

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Query:  KKLKWWRSESED-DASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAP
        KK+K    E +    S  +  ANLDDNLLFEV KHVDARTLATAAGVSKQWYKTA DE LWEL+CT+HWAN+GC NQQLRSVVLALGGFRRLHSLYPF P
Subjt:  KKLKWWRSESED-DASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAP

Query:  IIGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTPT
        +IGS  C  WG+DEVHLSLSLLSIRYYEKMKFKN PT
Subjt:  IIGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTPT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LR75 F-box domain-containing protein

1.7e-52

76.98

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Query:  KKLKWWRSESEDDAS--QVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFA
        KK K   ++ E D S  Q +  ANLDDNLLFEV KHVDARTLAT AGVSKQW+KTA DERLWEL+CT+HW NLGC NQQLRSVVLALGGFRRLHSLYPF 
Subjt:  KKLKWWRSESEDDAS--QVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFA

Query:  PIIGSTPCNR-WGRDEVHLSLSLLSIRYYEKMKFKNTPT
        P+IG   CN  WG+DEVHLSLSLLSIRYYEKMKFKN PT
Subjt:  PIIGSTPCNR-WGRDEVHLSLSLLSIRYYEKMKFKNTPT

A0A1S3BDV6 F-box protein GID2-like

2.9e-52

73.94

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Query:  KLKWWRSES------EDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLY
        K+K ++S+S      ++   Q +  ANLDDNLLFEV KHVDARTLATAAGV+KQW+KTA DERLWEL+CT+HW NLGC NQQLRSVVLALGGFRRLHSLY
Subjt:  KLKWWRSES------EDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLY

Query:  PFAPIIGSTPCNR-WGRDEVHLSLSLLSIRYYEKMKFKNTPT
        PF P+IG   CN  WG+DEVHLSLSLLSIRYYEKMKFKN PT
Subjt:  PFAPIIGSTPCNR-WGRDEVHLSLSLLSIRYYEKMKFKNTPT

A0A5A7V5E1 F-box protein GID2-like

2.9e-52

73.94

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Query:  KLKWWRSES------EDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLY
        K+K ++S+S      ++   Q +  ANLDDNLLFEV KHVDARTLATAAGV+KQW+KTA DERLWEL+CT+HW NLGC NQQLRSVVLALGGFRRLHSLY
Subjt:  KLKWWRSES------EDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLY

Query:  PFAPIIGSTPCNR-WGRDEVHLSLSLLSIRYYEKMKFKNTPT
        PF P+IG   CN  WG+DEVHLSLSLLSIRYYEKMKFKN PT
Subjt:  PFAPIIGSTPCNR-WGRDEVHLSLSLLSIRYYEKMKFKNTPT

A0A6J1HCI1 F-box protein GID2-like

1.2e-53

75.74

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Query:  KKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPI
        KK+K    E +      +  ANLDDNLLFEV KHVDARTLATAAGVSKQW KTA DE LWEL+CT+HWAN+GC NQQLRSVVLALGGFRRLHSLYPF PI
Subjt:  KKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPI

Query:  IGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTPT
        +GS  C  WG+DE+HLSLSLLSIRYYEKMKFKN PT
Subjt:  IGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTPT

A0A6J1K7I7 F-box protein GID2-like

1.2e-53

75.74

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Query:  KKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPI
        KK+K    E +      +  ANLDDNLLFEV KHVDARTLATA+GVSKQWYKTA DE LWEL+CT+HWAN+GC N QLRSVVLALGGFRRLHSLYPF PI
Subjt:  KKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPI

Query:  IGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTPT
        IGS  C  WG+ EVHLSLSLLSIRYYEKMKFKN PT
Subjt:  IGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTPT

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

6.6e-25

50.42

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Query:  NLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPII-----------GSTPCNRWG
        +L ++L+FEVL+  +ARTLA AA VS+ W + A+DERLWE  C R WANLG   +QLR+VVL+LGGFRRLH++Y   P+               P  R G
Subjt:  NLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPII-----------GSTPCNRWG

Query:  RDEVHLSLSLLSIRYYEKM
        RD+V LSLSL SI +++ M
Subjt:  RDEVHLSLSLLSIRYYEKM

Q9LUB6 F-box protein SNE

5.8e-13

37.5

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Query:  NLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPIIGSTPCNRWGRDEVHLSLSLLSIRY
        ++L E+L+ +D  +L +AA V + W   A+++ +WE +C R  +     +  LRSVV ALGG+R L+ L    P++   P   W RD++ LSLSL  + Y
Subjt:  NLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPIIGSTPCNRWGRDEVHLSLSLLSIRY

Query:  YEKM
        YE++
Subjt:  YEKM

Q9STX3 F-box protein GID2

7.0e-43

61.81

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Query:  SGDDSGSNTKKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRL
        +GD      KK+K   S  E++     G +NLD+NL++EVLKHVDA+TLA ++ VSK W+KTAQDERLWELICTRHW N+GCG  QLRSVVLALGGFRRL
Subjt:  SGDDSGSNTKKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRL

Query:  HSLYPFAPIIGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTP
        HSLY + P+    P  R+G+DE+ L+LSLLSIRYYEKM F   P
Subjt:  HSLYPFAPIIGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTP

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

5.0e-44

61.81

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Query:  SGDDSGSNTKKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRL
        +GD      KK+K   S  E++     G +NLD+NL++EVLKHVDA+TLA ++ VSK W+KTAQDERLWELICTRHW N+GCG  QLRSVVLALGGFRRL
Subjt:  SGDDSGSNTKKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRL

Query:  HSLYPFAPIIGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTP
        HSLY + P+    P  R+G+DE+ L+LSLLSIRYYEKM F   P
Subjt:  HSLYPFAPIIGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTP

AT5G48170.1 F-box family protein

4.1e-14

37.5

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Query:  NLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPIIGSTPCNRWGRDEVHLSLSLLSIRY
        ++L E+L+ +D  +L +AA V + W   A+++ +WE +C R  +     +  LRSVV ALGG+R L+ L    P++   P   W RD++ LSLSL  + Y
Subjt:  NLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYPFAPIIGSTPCNRWGRDEVHLSLSLLSIRY

Query:  YEKM
        YE++
Subjt:  YEKM

Sequences

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CDS sequence

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ATGAAGCGGCCTTTTTCCGGCGATGATTCAGGCAGCAATACGAAGAAGCTGAAGTGGTGGAGGTCAGAGTCGGAGGATGACGCATCCCAAGTCGCTGGGTTGGCGAATTT
AGACGACAATCTGTTGTTCGAGGTGCTGAAGCACGTGGATGCGAGGACGCTGGCGACGGCGGCGGGCGTGAGCAAGCAGTGGTACAAGACGGCGCAGGACGAGCGGCTGT
GGGAGCTGATCTGCACCAGACACTGGGCTAACCTCGGCTGCGGAAACCAACAGCTACGGTCCGTGGTGCTGGCGCTTGGTGGCTTCCGTCGCTTGCACTCTCTTTACCCG
TTTGCGCCAATTATTGGATCCACGCCCTGTAATCGATGGGGGAGGGACGAGGTTCATCTCTCCCTCTCTCTTCTCTCCATTCGCTACTACGAGAAGATGAAATTCAAAAA
CACACCCACA

mRNA sequence

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Protein sequence

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MKRPFSGDDSGSNTKKLKWWRSESEDDASQVAGLANLDDNLLFEVLKHVDARTLATAAGVSKQWYKTAQDERLWELICTRHWANLGCGNQQLRSVVLALGGFRRLHSLYP
FAPIIGSTPCNRWGRDEVHLSLSLLSIRYYEKMKFKNTPT

MS014321 (gene) of Bitter gourd (TR) v1 genome