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MS014343 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014343
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionEndo-1,4-beta-xylanase
Genome locationscaffold19:78579..78745
RNA-Seq ExpressionMS014343
SyntenyMS014343
Gene Ontology termsGO:0000272 - polysaccharide catabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008465247.1 PREDICTED: endo-1,4-beta-xylanase A-like [Cucumis melo]3.9e-0964.91Show/hide
Query:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
        WIQS NKNDMM  +QNRL  L T Y+ KFK  +VNNEM+HGSFY  HL KDI+ +MF
Subjt:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
XP_022135148.1 uncharacterized protein LOC111007187 [Momordica charantia]5.5e-1170.18Show/hide
Query:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
        WIQS NKNDMMV +QNRL DL T Y+ KFK  +VNNEM+HGSFY  HL KDI+ NMF
Subjt:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
XP_022137962.1 uncharacterized protein LOC111009247 [Momordica charantia]2.3e-0964.91Show/hide
Query:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
        WIQS N NDMMV +QNR+ DL T Y+ KF   +VNNEM+HGSFY  HL KDI+ NMF
Subjt:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
XP_031741933.1 endo-1,4-beta-xylanase 1 [Cucumis sativus]6.0e-1066.67Show/hide
Query:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
        WIQS NKNDMM  +QNRL DL T Y+ KFK  +VNNEM+HGSFY  HL KDI+ +MF
Subjt:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
XP_038898341.1 endo-1,4-beta-xylanase 1 [Benincasa hispida]3.9e-0964.91Show/hide
Query:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
        WIQS NKNDMM  +QNRL  L T Y+ KFK  +VNNEM+HGSFY  HL KDI+ +MF
Subjt:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
TrEMBL top hitse value%identityAlignment
A0A0A0KMC7 GH10 domain-containing protein2.9e-1066.67Show/hide
Query:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
        WIQS NKNDMM  +QNRL DL T Y+ KFK  +VNNEM+HGSFY  HL KDI+ +MF
Subjt:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
A0A1S3CNC3 endo-1,4-beta-xylanase A-like1.9e-0964.91Show/hide
Query:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
        WIQS NKNDMM  +QNRL  L T Y+ KFK  +VNNEM+HGSFY  HL KDI+ +MF
Subjt:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
A0A5A7VFG2 Endo-1,4-beta-xylanase A-like1.9e-0964.91Show/hide
Query:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
        WIQS NKNDMM  +QNRL  L T Y+ KFK  +VNNEM+HGSFY  HL KDI+ +MF
Subjt:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
A0A6J1C401 uncharacterized protein LOC1110071872.6e-1170.18Show/hide
Query:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
        WIQS NKNDMMV +QNRL DL T Y+ KFK  +VNNEM+HGSFY  HL KDI+ NMF
Subjt:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
A0A6J1C9R0 uncharacterized protein LOC1110092471.1e-0964.91Show/hide
Query:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
        WIQS N NDMMV +QNR+ DL T Y+ KF   +VNNEM+HGSFY  HL KDI+ NMF
Subjt:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
SwissProt top hitse value%identityAlignment
A0A1P8AWH8 Endo-1,4-beta-xylanase 12.4e-0957.89Show/hide
Query:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFYH--LIKDIQVNMF
        WIQ+ N+ D+   +QNRL DL   Y+ KFK  +VNNEM+HGSFY   L KDI+VNMF
Subjt:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFYH--LIKDIQVNMF
F4JG10 Endo-1,4-beta-xylanase 32.2e-0750.88Show/hide
Query:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
        W++  NK D+M  +Q RL DL T Y+ KFK  +VNNEM+HGSFY   L K ++  MF
Subjt:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
O80596 Endo-1,4-beta-xylanase 21.6e-0543.86Show/hide
Query:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
        W+Q    + +   ++NR+ DL T Y  KF+  +VNNEM+HGSFY   L  D + NMF
Subjt:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
Arabidopsis top hitse value%identityAlignment
AT1G10050.1 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein1.1e-0643.86Show/hide
Query:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
        W+Q    + +   ++NR+ DL T Y  KF+  +VNNEM+HGSFY   L  D + NMF
Subjt:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
AT1G58370.1 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein1.7e-1057.89Show/hide
Query:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFYH--LIKDIQVNMF
        WIQ+ N+ D+   +QNRL DL   Y+ KFK  +VNNEM+HGSFY   L KDI+VNMF
Subjt:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFYH--LIKDIQVNMF
AT4G08160.1 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein1.6e-0850.88Show/hide
Query:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
        W++  NK D+M  +Q RL DL T Y+ KFK  +VNNEM+HGSFY   L K ++  MF
Subjt:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
AT4G08160.2 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein1.6e-0850.88Show/hide
Query:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF
        W++  NK D+M  +Q RL DL T Y+ KFK  +VNNEM+HGSFY   L K ++  MF
Subjt:  WIQSCNKNDMMVVIQNRL-DLSTLYRVKFKPCNVNNEMIHGSFY--HLIKDIQVNMF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGATTCAATCCTGTAATAAGAATGATATGATGGTTGTCATTCAAAATCGTCTTGACCTATCGACACTCTATAGGGTTAAGTTCAAGCCCTGCAATGTCAACAATGAGAT
GATACATGGATCATTCTATCATCTCATAAAAGATATTCAAGTTAACATGTTT
mRNA sequenceShow/hide mRNA sequence
TGGATTCAATCCTGTAATAAGAATGATATGATGGTTGTCATTCAAAATCGTCTTGACCTATCGACACTCTATAGGGTTAAGTTCAAGCCCTGCAATGTCAACAATGAGAT
GATACATGGATCATTCTATCATCTCATAAAAGATATTCAAGTTAACATGTTT
Protein sequenceShow/hide protein sequence
WIQSCNKNDMMVVIQNRLDLSTLYRVKFKPCNVNNEMIHGSFYHLIKDIQVNMF