; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS014350 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS014350
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionsplicing factor 3B subunit 4
Genome locationscaffold19:156143..157297
RNA-Seq ExpressionMS014350
SyntenyMS014350
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0010075 - regulation of meristem growth (biological process)
GO:0048026 - positive regulation of mRNA splicing, via spliceosome (biological process)
GO:0005689 - U12-type spliceosomal complex (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0070063 - RNA polymerase binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067649.1 splicing factor 3B subunit 4 [Cucumis melo var. makuwa]1.5e-11188.63Show/hide
Query:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
        +L YDT+  F   +   +IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
Subjt:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP

Query:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQ-PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQ
        PTLPKVAQPNG IGAPVPPRPFANG I P+PI AIRP PPQ VAFPPM M GQ PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMP PPPQA AHSM 
Subjt:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQ-PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQ

Query:  IPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSM-PPPPPNHIPPPLQSSG
        IPPPMGMGGAQPPLWRPPPPPMQ QQQPGRPPMQMSSM PPPPPNHIPPPL SSG
Subjt:  IPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSM-PPPPPNHIPPPLQSSG

TYK23651.1 splicing factor 3B subunit 4 [Cucumis melo var. makuwa]1.5e-11188.63Show/hide
Query:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
        +L YDT+  F   +   +IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
Subjt:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP

Query:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQ-PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQ
        PTLPKVAQPNG IGAPVPPRPFANG I P+PI AIRP PPQ VAFPPM M GQ PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMP PPPQA AHSM 
Subjt:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQ-PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQ

Query:  IPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSM-PPPPPNHIPPPLQSSG
        IPPPMGMGGAQPPLWRPPPPPMQ QQQPGRPPMQMSSM PPPPPNHIPPPL SSG
Subjt:  IPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSM-PPPPPNHIPPPLQSSG

XP_022138265.1 splicing factor 3B subunit 4 [Momordica charantia]4.5e-12494.07Show/hide
Query:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
        +L YDT+  F   +   +IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
Subjt:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP

Query:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQPAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQI
        PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPI AIRPPPPQ VAFPPMQMPGQPAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQI
Subjt:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQPAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQI

Query:  PPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSMPPPPPNHIPPPLQSSG
        PPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSMPPPPPNHIPPPLQSSG
Subjt:  PPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSMPPPPPNHIPPPLQSSG

XP_022948089.1 splicing factor 3B subunit 4-like [Cucurbita moschata]4.3e-11187.06Show/hide
Query:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
        +L YDT+  F   +   +IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
Subjt:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP

Query:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQ-PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQ
        PTLPKVAQPNG +G  +PPRPFANG IAPSPI AIRPPPPQ VAFPPMQMPGQ PAWQGQPQQ GQ+MPGSM+ PPVQQFRPPPPNMPPPPPQAP HSM 
Subjt:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQ-PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQ

Query:  IPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSM-PPPPPNHIPPPLQSSG
        IPPPMGMGG QPPLWRPPPPPMQ QQQPGRPPMQMSSM PPPPPNHIPPP  SSG
Subjt:  IPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSM-PPPPPNHIPPPLQSSG

XP_038878136.1 splicing factor 3B subunit 4 [Benincasa hispida]1.5e-11188.63Show/hide
Query:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
        +L YDT+  F   +   +IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
Subjt:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP

Query:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQ-PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQ
        PTLPKVAQPNG IGAPVPPRPFANG I PSPI AIRPPPPQ VAFPPM M GQ PAWQGQPQQPGQMMPGS+IPPPVQQFRPPPPNMP PPPQA AHSM 
Subjt:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQ-PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQ

Query:  IPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSM-PPPPPNHIPPPLQSSG
        IPPPMGMGGAQPPLWRPPPPP  MQQQPGRPPMQMSSM PPPPPNHIPPPL SSG
Subjt:  IPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSM-PPPPPNHIPPPLQSSG

TrEMBL top hitse value%identityAlignment
A0A1S3AYG3 splicing factor 3B subunit 42.1e-11188.24Show/hide
Query:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
        +L YDT+  F   +   +IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
Subjt:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP

Query:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQ-PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQ
        PTLPKVAQPNG IGAPVPPRPFANG I P+PI AIRP PPQ VAFPPM M GQ PAWQGQPQQPG MMPGSMIPPPVQQFRPPPPNMP PPPQA AHSM 
Subjt:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQ-PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQ

Query:  IPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSM-PPPPPNHIPPPLQSSG
        IPPPMGMGGAQPPLWRPPPPPMQ QQQPGRPPMQMSSM PPPPPNHIPPPL SSG
Subjt:  IPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSM-PPPPPNHIPPPLQSSG

A0A5A7VR80 Splicing factor 3B subunit 47.2e-11288.63Show/hide
Query:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
        +L YDT+  F   +   +IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
Subjt:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP

Query:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQ-PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQ
        PTLPKVAQPNG IGAPVPPRPFANG I P+PI AIRP PPQ VAFPPM M GQ PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMP PPPQA AHSM 
Subjt:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQ-PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQ

Query:  IPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSM-PPPPPNHIPPPLQSSG
        IPPPMGMGGAQPPLWRPPPPPMQ QQQPGRPPMQMSSM PPPPPNHIPPPL SSG
Subjt:  IPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSM-PPPPPNHIPPPLQSSG

A0A5D3DJ06 Splicing factor 3B subunit 47.2e-11288.63Show/hide
Query:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
        +L YDT+  F   +   +IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
Subjt:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP

Query:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQ-PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQ
        PTLPKVAQPNG IGAPVPPRPFANG I P+PI AIRP PPQ VAFPPM M GQ PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMP PPPQA AHSM 
Subjt:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQ-PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQ

Query:  IPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSM-PPPPPNHIPPPLQSSG
        IPPPMGMGGAQPPLWRPPPPPMQ QQQPGRPPMQMSSM PPPPPNHIPPPL SSG
Subjt:  IPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSM-PPPPPNHIPPPLQSSG

A0A6J1C8Z7 splicing factor 3B subunit 42.2e-12494.07Show/hide
Query:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
        +L YDT+  F   +   +IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
Subjt:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP

Query:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQPAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQI
        PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPI AIRPPPPQ VAFPPMQMPGQPAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQI
Subjt:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQPAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQI

Query:  PPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSMPPPPPNHIPPPLQSSG
        PPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSMPPPPPNHIPPPLQSSG
Subjt:  PPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSMPPPPPNHIPPPLQSSG

A0A6J1G8U2 splicing factor 3B subunit 4-like2.1e-11187.06Show/hide
Query:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
        +L YDT+  F   +   +IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP
Subjt:  QLCYDTWIIF---LLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGP

Query:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQ-PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQ
        PTLPKVAQPNG +G  +PPRPFANG IAPSPI AIRPPPPQ VAFPPMQMPGQ PAWQGQPQQ GQ+MPGSM+ PPVQQFRPPPPNMPPPPPQAP HSM 
Subjt:  PTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQ-PAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQ

Query:  IPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSM-PPPPPNHIPPPLQSSG
        IPPPMGMGG QPPLWRPPPPPMQ QQQPGRPPMQMSSM PPPPPNHIPPP  SSG
Subjt:  IPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSM-PPPPPNHIPPPLQSSG

SwissProt top hitse value%identityAlignment
O14102 Spliceosome-associated protein 491.4e-1641.88Show/hide
Query:  QIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAAS--------NPQKSRPHTLFASGPPTLPKVAQP
        Q+ RD + G S+G+GF+SYDSFE +DAAIEAMN Q+L N+ ITVSYA+K++ KGERHG  AER LAA+         PQ + P   F+   P     A  
Subjt:  QIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAAS--------NPQKSRPHTLFASGPPTLPKVAQP

Query:  NGVIGA----PVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQ-MPGQPAWQGQPQQPGQMMPGS--MIPPPVQQFRPPPPNMPPPPPQA
           I A    PVP  P    T A  P++      P V+ F   Q  PG PA    P     M PG   ++PPP     PP   M  P P A
Subjt:  NGVIGA----PVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQ-MPGQPAWQGQPQQPGQMMPGS--MIPPPVQQFRPPPPNMPPPPPQA

Q09442 Splicing factor 3B subunit 41.1e-2943.84Show/hide
Query:  QLCYDTWIIFLLYYQ---IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFAS
        +L YDT+  F +  Q   IMRD D+G S+GF FI++ SFEASD A+EAMNGQ+LCNR ITVSYA+K+D+KGERHGT AER+LAA NP   K RPH +F+ 
Subjt:  QLCYDTWIIFLLYYQ---IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFAS

Query:  ---GPPTLPKVAQP--NGVIGAPVPPRPFANGTIAPSPITA------------IRPPPPQVVAFPPMQMPGQPAWQGQPQQP--GQMMPGSMIPPPVQQF
           G P    +A P  +  I A    RP       P P+              + PPPP V   PP  MP  P    +P  P    M P    PPP +  
Subjt:  ---GPPTLPKVAQP--NGVIGAPVPPRPFANGTIAPSPITA------------IRPPPPQVVAFPPMQMPGQPAWQGQPQQP--GQMMPGSMIPPPVQQF

Query:  RPP-PPNMPPPPPQA---PAHSMQIPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSMPPPPPN---HIPPP
         PP  P MPPPPP +   P     +PPP   G   P    PPPPP      PG  P    S PP PP+    IPPP
Subjt:  RPP-PPNMPPPPPQA---PAHSMQIPPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQMSSMPPPPPN---HIPPP

Q15427 Splicing factor 3B subunit 41.9e-2942.42Show/hide
Query:  QLCYDTWIIFLLYYQ---IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFAS
        +L YDT+  F +  Q   IMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP  Q  RPH LFA 
Subjt:  QLCYDTWIIFLLYYQ---IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFAS

Query:  GPPTLPKVAQPNGVI-----GAPVPPRPFANGTIAPSPITAIRPP--PPQVVAFPPMQMPGQPAWQGQP--------------QQPGQMMPGSMIPPPVQ
         P   P  + PN V+     G P P  P       P P     PP  PP   A PP  MP   A  G P                P    PG M  P + 
Subjt:  GPPTLPKVAQPNGVI-----GAPVPPRPFANGTIAPSPITAIRPP--PPQVVAFPPMQMPGQPAWQGQP--------------QQPGQMMPGSMIPPPVQ

Query:  QFR---------------PPPPNMPPPPPQAPAHSMQIPPPMGMGGAQPPLWRP-----PPPPMQMQQQPG-RPPMQMSSMPPPPP-----NHIPPP
        Q +               PP     PPP   P      PPPMGM    PP   P     P PP  M+  P   PP   +  P PPP       +PPP
Subjt:  QFR---------------PPPPNMPPPPPQAPAHSMQIPPPMGMGGAQPPLWRP-----PPPPMQMQQQPG-RPPMQMSSMPPPPP-----NHIPPP

Q6AYL5 Splicing factor 3B subunit 45.6e-2942.09Show/hide
Query:  QLCYDTWIIFLLYYQ---IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFAS
        +L YDT+  F +  Q   IMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP  Q  RPH LFA 
Subjt:  QLCYDTWIIFLLYYQ---IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFAS

Query:  GPPTLPKVAQPNGVI-----GAPVPPRPFANGTIAPSPITAIRPP--PPQVVAFPPMQMPGQPAWQGQP--------------QQPGQMMPGSMIPPPVQ
         P   P  + PN V+     G P P  P       P P     PP  PP   A PP  MP      G P                P    PG M  P + 
Subjt:  GPPTLPKVAQPNGVI-----GAPVPPRPFANGTIAPSPITAIRPP--PPQVVAFPPMQMPGQPAWQGQP--------------QQPGQMMPGSMIPPPVQ

Query:  QFR---------------PPPPNMPPPPPQAPAHSMQIPPPMGMGGAQPPLWRP-----PPPPMQMQQQPG-RPPMQMSSMPPPPP-----NHIPPP
        Q +               PP     PPP   P      PPPMGM    PP   P     P PP  M+  P   PP   +  P PPP       +PPP
Subjt:  QFR---------------PPPPNMPPPPPQAPAHSMQIPPPMGMGGAQPPLWRP-----PPPPMQMQQQPG-RPPMQMSSMPPPPP-----NHIPPP

Q8QZY9 Splicing factor 3B subunit 45.6e-2942.09Show/hide
Query:  QLCYDTWIIFLLYYQ---IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFAS
        +L YDT+  F +  Q   IMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP  Q  RPH LFA 
Subjt:  QLCYDTWIIFLLYYQ---IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFAS

Query:  GPPTLPKVAQPNGVI-----GAPVPPRPFANGTIAPSPITAIRPP--PPQVVAFPPMQMPGQPAWQGQP--------------QQPGQMMPGSMIPPPVQ
         P   P  + PN V+     G P P  P       P P     PP  PP   A PP  MP      G P                P    PG M  P + 
Subjt:  GPPTLPKVAQPNGVI-----GAPVPPRPFANGTIAPSPITAIRPP--PPQVVAFPPMQMPGQPAWQGQP--------------QQPGQMMPGSMIPPPVQ

Query:  QFR---------------PPPPNMPPPPPQAPAHSMQIPPPMGMGGAQPPLWRP-----PPPPMQMQQQPG-RPPMQMSSMPPPPP-----NHIPPP
        Q +               PP     PPP   P      PPPMGM    PP   P     P PP  M+  P   PP   +  P PPP       +PPP
Subjt:  QFR---------------PPPPNMPPPPPQAPAHSMQIPPPMGMGGAQPPLWRP-----PPPPMQMQQQPG-RPPMQMSSMPPPPP-----NHIPPP

Arabidopsis top hitse value%identityAlignment
AT2G18510.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.8e-5457.47Show/hide
Query:  QLCYDTWIIFLLYY---QIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFAS
        +L YDT+  F +     +IMRDPDTGNSRGFGFISYDSFEASDAAIE+M GQYL NRQITVSYAYKKDTKGERHGTPAER+LAA+NP  QKSRPHTLFA 
Subjt:  QLCYDTWIIFLLYY---QIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFAS

Query:  GPPTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIR---PPPPQVVAFPPMQMPGQPAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPA
        GPP+     Q NG+      PRPFANG++ P PI A R   PPPPQV    P      P+W  QPQQ       SM+PPP+ QFRPP    PPPPPQ   
Subjt:  GPPTLPKVAQPNGVIGAPVPPRPFANGTIAPSPITAIR---PPPPQVVAFPPMQMPGQPAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPA

Query:  HSMQI------PPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQM-------SSMPPPPPN
        H          PPP  MG  Q   W    PP  MQQQ G P  Q         SMPPPPP+
Subjt:  HSMQI------PPPMGMGGAQPPLWRPPPPPMQMQQQPGRPPMQM-------SSMPPPPPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAATTGTGTTATGACACTTGGATTATCTTCCTTTTGTATTACCAGATCATGAGGGATCCAGATACAGGAAATTCACGTGGGTTTGGTTTTATTAGCTACGACTCTTTCGA
GGCATCCGATGCAGCAATTGAGGCTATGAATGGCCAATATCTTTGTAATCGCCAAATAACGGTTTCGTATGCCTATAAGAAAGATACCAAGGGAGAGCGGCACGGAACGC
CTGCAGAAAGAGTACTGGCTGCTAGCAATCCCCAGAAGAGCAGGCCTCACACTTTGTTCGCAAGTGGCCCTCCGACACTTCCAAAGGTTGCCCAGCCGAACGGTGTGATC
GGAGCTCCGGTGCCACCACGCCCCTTTGCCAATGGCACCATTGCTCCCAGCCCGATTACTGCAATACGTCCTCCGCCACCACAAGTGGTGGCTTTCCCCCCTATGCAGAT
GCCTGGACAACCAGCATGGCAGGGCCAGCCGCAGCAACCAGGTCAAATGATGCCAGGTTCCATGATTCCACCACCAGTTCAGCAGTTCCGGCCACCTCCTCCAAACATGC
CTCCACCGCCGCCTCAGGCTCCCGCTCATTCAATGCAGATCCCTCCACCGATGGGAATGGGAGGAGCACAACCACCGCTCTGGCGACCACCACCACCGCCGATGCAGATG
CAGCAGCAGCCCGGGAGGCCCCCTATGCAAATGTCATCAATGCCTCCGCCGCCTCCTAATCACATTCCACCGCCTCTTCAATCTTCAGGC
mRNA sequenceShow/hide mRNA sequence
CAATTGTGTTATGACACTTGGATTATCTTCCTTTTGTATTACCAGATCATGAGGGATCCAGATACAGGAAATTCACGTGGGTTTGGTTTTATTAGCTACGACTCTTTCGA
GGCATCCGATGCAGCAATTGAGGCTATGAATGGCCAATATCTTTGTAATCGCCAAATAACGGTTTCGTATGCCTATAAGAAAGATACCAAGGGAGAGCGGCACGGAACGC
CTGCAGAAAGAGTACTGGCTGCTAGCAATCCCCAGAAGAGCAGGCCTCACACTTTGTTCGCAAGTGGCCCTCCGACACTTCCAAAGGTTGCCCAGCCGAACGGTGTGATC
GGAGCTCCGGTGCCACCACGCCCCTTTGCCAATGGCACCATTGCTCCCAGCCCGATTACTGCAATACGTCCTCCGCCACCACAAGTGGTGGCTTTCCCCCCTATGCAGAT
GCCTGGACAACCAGCATGGCAGGGCCAGCCGCAGCAACCAGGTCAAATGATGCCAGGTTCCATGATTCCACCACCAGTTCAGCAGTTCCGGCCACCTCCTCCAAACATGC
CTCCACCGCCGCCTCAGGCTCCCGCTCATTCAATGCAGATCCCTCCACCGATGGGAATGGGAGGAGCACAACCACCGCTCTGGCGACCACCACCACCGCCGATGCAGATG
CAGCAGCAGCCCGGGAGGCCCCCTATGCAAATGTCATCAATGCCTCCGCCGCCTCCTAATCACATTCCACCGCCTCTTCAATCTTCAGGC
Protein sequenceShow/hide protein sequence
QLCYDTWIIFLLYYQIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGVI
GAPVPPRPFANGTIAPSPITAIRPPPPQVVAFPPMQMPGQPAWQGQPQQPGQMMPGSMIPPPVQQFRPPPPNMPPPPPQAPAHSMQIPPPMGMGGAQPPLWRPPPPPMQM
QQQPGRPPMQMSSMPPPPPNHIPPPLQSSG